data_3BYP # _entry.id 3BYP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BYP pdb_00003byp 10.2210/pdb3byp/pdb RCSB RCSB046122 ? ? WWPDB D_1000046122 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BYP _pdbx_database_status.recvd_initial_deposition_date 2008-01-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3BYR _pdbx_database_related.details 'CzrB with Zn bound' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cherezov, V.' 1 'Srinivasan, V.' 2 'Szebenyi, D.M.E.' 3 'Caffrey, M.' 4 # _citation.id primary _citation.title 'Insights into the Mode of Action of a Putative Zinc Transporter CzrB in Thermus thermophilus' _citation.journal_abbrev Structure _citation.journal_volume 16 _citation.page_first 1378 _citation.page_last 1388 _citation.year 2008 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18786400 _citation.pdbx_database_id_DOI 10.1016/j.str.2008.05.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cherezov, V.' 1 ? primary 'Hofer, N.' 2 ? primary 'Szebenyi, D.M.' 3 ? primary 'Kolaj, O.' 4 ? primary 'Wall, J.G.' 5 ? primary 'Gillilan, R.' 6 ? primary 'Srinivasan, V.' 7 ? primary 'Jaroniec, C.P.' 8 ? primary 'Caffrey, M.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CzrB protein' 10780.223 2 ? ? 'sequence database residues 198-291' ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 water nat water 18.015 296 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQAT IHVEPEGERKRTNP ; _entity_poly.pdbx_seq_one_letter_code_can ;GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQAT IHVEPEGERKRTNP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 MET n 1 4 ASP n 1 5 GLU n 1 6 GLY n 1 7 LEU n 1 8 PRO n 1 9 PRO n 1 10 GLU n 1 11 GLU n 1 12 VAL n 1 13 GLU n 1 14 ARG n 1 15 ILE n 1 16 ARG n 1 17 ALA n 1 18 PHE n 1 19 LEU n 1 20 GLN n 1 21 GLU n 1 22 ARG n 1 23 ILE n 1 24 ARG n 1 25 GLY n 1 26 ARG n 1 27 ALA n 1 28 LEU n 1 29 GLU n 1 30 VAL n 1 31 HIS n 1 32 ASP n 1 33 LEU n 1 34 LYS n 1 35 THR n 1 36 ARG n 1 37 ARG n 1 38 ALA n 1 39 GLY n 1 40 PRO n 1 41 ARG n 1 42 SER n 1 43 PHE n 1 44 LEU n 1 45 GLU n 1 46 PHE n 1 47 HIS n 1 48 LEU n 1 49 VAL n 1 50 VAL n 1 51 ARG n 1 52 GLY n 1 53 ASP n 1 54 THR n 1 55 PRO n 1 56 VAL n 1 57 GLU n 1 58 GLU n 1 59 ALA n 1 60 HIS n 1 61 ARG n 1 62 LEU n 1 63 CYS n 1 64 ASP n 1 65 GLU n 1 66 LEU n 1 67 GLU n 1 68 ARG n 1 69 ALA n 1 70 LEU n 1 71 ALA n 1 72 GLN n 1 73 ALA n 1 74 PHE n 1 75 PRO n 1 76 GLY n 1 77 LEU n 1 78 GLN n 1 79 ALA n 1 80 THR n 1 81 ILE n 1 82 HIS n 1 83 VAL n 1 84 GLU n 1 85 PRO n 1 86 GLU n 1 87 GLY n 1 88 GLU n 1 89 ARG n 1 90 LYS n 1 91 ARG n 1 92 THR n 1 93 ASN n 1 94 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene czrB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pIVEX2.4d _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 LEU 2 2 ? ? ? A . n A 1 3 MET 3 3 ? ? ? A . n A 1 4 ASP 4 4 ? ? ? A . n A 1 5 GLU 5 5 ? ? ? A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 HIS 82 82 82 HIS HIS A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 GLU 88 88 ? ? ? A . n A 1 89 ARG 89 89 ? ? ? A . n A 1 90 LYS 90 90 ? ? ? A . n A 1 91 ARG 91 91 ? ? ? A . n A 1 92 THR 92 92 ? ? ? A . n A 1 93 ASN 93 93 ? ? ? A . n A 1 94 PRO 94 94 ? ? ? A . n B 1 1 GLY 1 1 ? ? ? B . n B 1 2 LEU 2 2 ? ? ? B . n B 1 3 MET 3 3 ? ? ? B . n B 1 4 ASP 4 4 ? ? ? B . n B 1 5 GLU 5 5 ? ? ? B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 GLU 13 13 13 GLU GLU B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 PHE 18 18 18 PHE PHE B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 GLN 20 20 20 GLN GLN B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ARG 22 22 22 ARG ARG B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 ARG 26 26 26 ARG ARG B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 GLU 29 29 29 GLU GLU B . n B 1 30 VAL 30 30 30 VAL VAL B . n B 1 31 HIS 31 31 31 HIS HIS B . n B 1 32 ASP 32 32 32 ASP ASP B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 THR 35 35 35 THR THR B . n B 1 36 ARG 36 36 36 ARG ARG B . n B 1 37 ARG 37 37 37 ARG ARG B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 GLY 39 39 39 GLY GLY B . n B 1 40 PRO 40 40 40 PRO PRO B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 SER 42 42 42 SER SER B . n B 1 43 PHE 43 43 43 PHE PHE B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 PHE 46 46 46 PHE PHE B . n B 1 47 HIS 47 47 47 HIS HIS B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 VAL 49 49 49 VAL VAL B . n B 1 50 VAL 50 50 50 VAL VAL B . n B 1 51 ARG 51 51 51 ARG ARG B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 THR 54 54 54 THR THR B . n B 1 55 PRO 55 55 55 PRO PRO B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 GLU 58 58 58 GLU GLU B . n B 1 59 ALA 59 59 59 ALA ALA B . n B 1 60 HIS 60 60 60 HIS HIS B . n B 1 61 ARG 61 61 61 ARG ARG B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 CYS 63 63 63 CYS CYS B . n B 1 64 ASP 64 64 64 ASP ASP B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 GLU 67 67 67 GLU GLU B . n B 1 68 ARG 68 68 68 ARG ARG B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 LEU 70 70 70 LEU LEU B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 GLN 72 72 72 GLN GLN B . n B 1 73 ALA 73 73 73 ALA ALA B . n B 1 74 PHE 74 74 74 PHE PHE B . n B 1 75 PRO 75 75 75 PRO PRO B . n B 1 76 GLY 76 76 76 GLY GLY B . n B 1 77 LEU 77 77 77 LEU LEU B . n B 1 78 GLN 78 78 78 GLN GLN B . n B 1 79 ALA 79 79 79 ALA ALA B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 ILE 81 81 81 ILE ILE B . n B 1 82 HIS 82 82 82 HIS HIS B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 GLU 86 86 86 GLU GLU B . n B 1 87 GLY 87 87 87 GLY GLY B . n B 1 88 GLU 88 88 ? ? ? B . n B 1 89 ARG 89 89 ? ? ? B . n B 1 90 LYS 90 90 ? ? ? B . n B 1 91 ARG 91 91 ? ? ? B . n B 1 92 THR 92 92 ? ? ? B . n B 1 93 ASN 93 93 ? ? ? B . n B 1 94 PRO 94 94 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 95 95 SO4 SO4 A . D 2 SO4 1 95 95 SO4 SO4 B . E 2 SO4 1 96 96 SO4 SO4 B . F 3 HOH 1 96 96 HOH HOH A . F 3 HOH 2 97 97 HOH HOH A . F 3 HOH 3 98 98 HOH HOH A . F 3 HOH 4 99 99 HOH HOH A . F 3 HOH 5 100 100 HOH HOH A . F 3 HOH 6 101 101 HOH HOH A . F 3 HOH 7 102 102 HOH HOH A . F 3 HOH 8 103 103 HOH HOH A . F 3 HOH 9 104 104 HOH HOH A . F 3 HOH 10 105 105 HOH HOH A . F 3 HOH 11 106 106 HOH HOH A . F 3 HOH 12 107 107 HOH HOH A . F 3 HOH 13 108 108 HOH HOH A . F 3 HOH 14 109 109 HOH HOH A . F 3 HOH 15 110 110 HOH HOH A . F 3 HOH 16 111 111 HOH HOH A . F 3 HOH 17 112 112 HOH HOH A . F 3 HOH 18 113 113 HOH HOH A . F 3 HOH 19 114 114 HOH HOH A . F 3 HOH 20 116 116 HOH HOH A . F 3 HOH 21 117 117 HOH HOH A . F 3 HOH 22 118 118 HOH HOH A . F 3 HOH 23 119 119 HOH HOH A . F 3 HOH 24 120 120 HOH HOH A . F 3 HOH 25 121 121 HOH HOH A . F 3 HOH 26 122 122 HOH HOH A . F 3 HOH 27 123 123 HOH HOH A . F 3 HOH 28 124 124 HOH HOH A . F 3 HOH 29 125 125 HOH HOH A . F 3 HOH 30 126 126 HOH HOH A . F 3 HOH 31 127 127 HOH HOH A . F 3 HOH 32 128 128 HOH HOH A . F 3 HOH 33 129 129 HOH HOH A . F 3 HOH 34 130 130 HOH HOH A . F 3 HOH 35 131 131 HOH HOH A . F 3 HOH 36 132 132 HOH HOH A . F 3 HOH 37 133 133 HOH HOH A . F 3 HOH 38 134 134 HOH HOH A . F 3 HOH 39 135 135 HOH HOH A . F 3 HOH 40 136 136 HOH HOH A . F 3 HOH 41 137 137 HOH HOH A . F 3 HOH 42 138 138 HOH HOH A . F 3 HOH 43 139 139 HOH HOH A . F 3 HOH 44 140 140 HOH HOH A . F 3 HOH 45 141 141 HOH HOH A . F 3 HOH 46 142 142 HOH HOH A . F 3 HOH 47 143 143 HOH HOH A . F 3 HOH 48 144 144 HOH HOH A . F 3 HOH 49 145 145 HOH HOH A . F 3 HOH 50 146 146 HOH HOH A . F 3 HOH 51 147 147 HOH HOH A . F 3 HOH 52 148 148 HOH HOH A . F 3 HOH 53 149 149 HOH HOH A . F 3 HOH 54 150 150 HOH HOH A . F 3 HOH 55 152 152 HOH HOH A . F 3 HOH 56 153 153 HOH HOH A . F 3 HOH 57 154 154 HOH HOH A . F 3 HOH 58 155 155 HOH HOH A . F 3 HOH 59 156 156 HOH HOH A . F 3 HOH 60 157 157 HOH HOH A . F 3 HOH 61 158 158 HOH HOH A . F 3 HOH 62 159 159 HOH HOH A . F 3 HOH 63 160 160 HOH HOH A . F 3 HOH 64 161 161 HOH HOH A . F 3 HOH 65 162 162 HOH HOH A . F 3 HOH 66 163 163 HOH HOH A . F 3 HOH 67 164 164 HOH HOH A . F 3 HOH 68 165 165 HOH HOH A . F 3 HOH 69 166 166 HOH HOH A . F 3 HOH 70 167 167 HOH HOH A . F 3 HOH 71 168 168 HOH HOH A . F 3 HOH 72 169 169 HOH HOH A . F 3 HOH 73 170 170 HOH HOH A . F 3 HOH 74 171 171 HOH HOH A . F 3 HOH 75 172 172 HOH HOH A . F 3 HOH 76 173 173 HOH HOH A . F 3 HOH 77 174 174 HOH HOH A . F 3 HOH 78 175 175 HOH HOH A . F 3 HOH 79 176 176 HOH HOH A . F 3 HOH 80 177 177 HOH HOH A . F 3 HOH 81 178 178 HOH HOH A . F 3 HOH 82 179 179 HOH HOH A . F 3 HOH 83 180 180 HOH HOH A . F 3 HOH 84 181 181 HOH HOH A . F 3 HOH 85 182 182 HOH HOH A . F 3 HOH 86 183 183 HOH HOH A . F 3 HOH 87 184 184 HOH HOH A . F 3 HOH 88 185 185 HOH HOH A . F 3 HOH 89 186 186 HOH HOH A . F 3 HOH 90 187 187 HOH HOH A . F 3 HOH 91 188 188 HOH HOH A . F 3 HOH 92 189 189 HOH HOH A . F 3 HOH 93 190 190 HOH HOH A . F 3 HOH 94 191 191 HOH HOH A . F 3 HOH 95 192 192 HOH HOH A . F 3 HOH 96 193 193 HOH HOH A . F 3 HOH 97 194 194 HOH HOH A . F 3 HOH 98 195 195 HOH HOH A . F 3 HOH 99 196 196 HOH HOH A . F 3 HOH 100 197 197 HOH HOH A . F 3 HOH 101 198 198 HOH HOH A . F 3 HOH 102 199 199 HOH HOH A . F 3 HOH 103 200 200 HOH HOH A . F 3 HOH 104 201 201 HOH HOH A . F 3 HOH 105 202 202 HOH HOH A . F 3 HOH 106 203 203 HOH HOH A . F 3 HOH 107 204 204 HOH HOH A . F 3 HOH 108 205 205 HOH HOH A . F 3 HOH 109 206 206 HOH HOH A . F 3 HOH 110 207 207 HOH HOH A . F 3 HOH 111 208 208 HOH HOH A . F 3 HOH 112 209 209 HOH HOH A . F 3 HOH 113 210 210 HOH HOH A . F 3 HOH 114 211 211 HOH HOH A . F 3 HOH 115 212 212 HOH HOH A . F 3 HOH 116 213 213 HOH HOH A . F 3 HOH 117 214 214 HOH HOH A . F 3 HOH 118 215 215 HOH HOH A . F 3 HOH 119 216 216 HOH HOH A . F 3 HOH 120 217 217 HOH HOH A . F 3 HOH 121 218 218 HOH HOH A . F 3 HOH 122 219 219 HOH HOH A . F 3 HOH 123 220 220 HOH HOH A . F 3 HOH 124 221 221 HOH HOH A . F 3 HOH 125 222 222 HOH HOH A . F 3 HOH 126 223 223 HOH HOH A . F 3 HOH 127 224 224 HOH HOH A . F 3 HOH 128 225 225 HOH HOH A . F 3 HOH 129 226 226 HOH HOH A . F 3 HOH 130 227 227 HOH HOH A . F 3 HOH 131 228 228 HOH HOH A . F 3 HOH 132 229 229 HOH HOH A . F 3 HOH 133 230 230 HOH HOH A . F 3 HOH 134 231 231 HOH HOH A . F 3 HOH 135 233 233 HOH HOH A . F 3 HOH 136 234 234 HOH HOH A . F 3 HOH 137 235 235 HOH HOH A . F 3 HOH 138 236 236 HOH HOH A . F 3 HOH 139 238 238 HOH HOH A . F 3 HOH 140 239 239 HOH HOH A . F 3 HOH 141 240 240 HOH HOH A . F 3 HOH 142 241 241 HOH HOH A . F 3 HOH 143 242 242 HOH HOH A . F 3 HOH 144 243 243 HOH HOH A . F 3 HOH 145 244 244 HOH HOH A . F 3 HOH 146 245 245 HOH HOH A . F 3 HOH 147 246 246 HOH HOH A . F 3 HOH 148 247 247 HOH HOH A . F 3 HOH 149 248 248 HOH HOH A . F 3 HOH 150 249 249 HOH HOH A . F 3 HOH 151 250 250 HOH HOH A . F 3 HOH 152 251 251 HOH HOH A . G 3 HOH 1 115 115 HOH HOH B . G 3 HOH 2 116 116 HOH HOH B . G 3 HOH 3 117 117 HOH HOH B . G 3 HOH 4 118 118 HOH HOH B . G 3 HOH 5 119 119 HOH HOH B . G 3 HOH 6 120 120 HOH HOH B . G 3 HOH 7 121 121 HOH HOH B . G 3 HOH 8 122 122 HOH HOH B . G 3 HOH 9 123 123 HOH HOH B . G 3 HOH 10 124 124 HOH HOH B . G 3 HOH 11 125 125 HOH HOH B . G 3 HOH 12 126 126 HOH HOH B . G 3 HOH 13 127 127 HOH HOH B . G 3 HOH 14 128 128 HOH HOH B . G 3 HOH 15 129 129 HOH HOH B . G 3 HOH 16 130 130 HOH HOH B . G 3 HOH 17 131 131 HOH HOH B . G 3 HOH 18 132 132 HOH HOH B . G 3 HOH 19 133 133 HOH HOH B . G 3 HOH 20 134 134 HOH HOH B . G 3 HOH 21 135 135 HOH HOH B . G 3 HOH 22 136 136 HOH HOH B . G 3 HOH 23 137 137 HOH HOH B . G 3 HOH 24 138 138 HOH HOH B . G 3 HOH 25 139 139 HOH HOH B . G 3 HOH 26 140 140 HOH HOH B . G 3 HOH 27 141 141 HOH HOH B . G 3 HOH 28 142 142 HOH HOH B . G 3 HOH 29 143 143 HOH HOH B . G 3 HOH 30 144 144 HOH HOH B . G 3 HOH 31 145 145 HOH HOH B . G 3 HOH 32 146 146 HOH HOH B . G 3 HOH 33 147 147 HOH HOH B . G 3 HOH 34 148 148 HOH HOH B . G 3 HOH 35 149 149 HOH HOH B . G 3 HOH 36 150 150 HOH HOH B . G 3 HOH 37 151 151 HOH HOH B . G 3 HOH 38 152 152 HOH HOH B . G 3 HOH 39 153 153 HOH HOH B . G 3 HOH 40 154 154 HOH HOH B . G 3 HOH 41 155 155 HOH HOH B . G 3 HOH 42 156 156 HOH HOH B . G 3 HOH 43 157 157 HOH HOH B . G 3 HOH 44 158 158 HOH HOH B . G 3 HOH 45 159 159 HOH HOH B . G 3 HOH 46 160 160 HOH HOH B . G 3 HOH 47 161 161 HOH HOH B . G 3 HOH 48 162 162 HOH HOH B . G 3 HOH 49 163 163 HOH HOH B . G 3 HOH 50 164 164 HOH HOH B . G 3 HOH 51 165 165 HOH HOH B . G 3 HOH 52 166 166 HOH HOH B . G 3 HOH 53 167 167 HOH HOH B . G 3 HOH 54 168 168 HOH HOH B . G 3 HOH 55 169 169 HOH HOH B . G 3 HOH 56 170 170 HOH HOH B . G 3 HOH 57 171 171 HOH HOH B . G 3 HOH 58 172 172 HOH HOH B . G 3 HOH 59 173 173 HOH HOH B . G 3 HOH 60 174 174 HOH HOH B . G 3 HOH 61 175 175 HOH HOH B . G 3 HOH 62 176 176 HOH HOH B . G 3 HOH 63 177 177 HOH HOH B . G 3 HOH 64 178 178 HOH HOH B . G 3 HOH 65 179 179 HOH HOH B . G 3 HOH 66 180 180 HOH HOH B . G 3 HOH 67 181 181 HOH HOH B . G 3 HOH 68 182 182 HOH HOH B . G 3 HOH 69 183 183 HOH HOH B . G 3 HOH 70 184 184 HOH HOH B . G 3 HOH 71 185 185 HOH HOH B . G 3 HOH 72 186 186 HOH HOH B . G 3 HOH 73 187 187 HOH HOH B . G 3 HOH 74 188 188 HOH HOH B . G 3 HOH 75 189 189 HOH HOH B . G 3 HOH 76 190 190 HOH HOH B . G 3 HOH 77 191 191 HOH HOH B . G 3 HOH 78 192 192 HOH HOH B . G 3 HOH 79 193 193 HOH HOH B . G 3 HOH 80 194 194 HOH HOH B . G 3 HOH 81 195 195 HOH HOH B . G 3 HOH 82 196 196 HOH HOH B . G 3 HOH 83 197 197 HOH HOH B . G 3 HOH 84 198 198 HOH HOH B . G 3 HOH 85 199 199 HOH HOH B . G 3 HOH 86 200 200 HOH HOH B . G 3 HOH 87 201 201 HOH HOH B . G 3 HOH 88 202 202 HOH HOH B . G 3 HOH 89 203 203 HOH HOH B . G 3 HOH 90 204 204 HOH HOH B . G 3 HOH 91 205 205 HOH HOH B . G 3 HOH 92 206 206 HOH HOH B . G 3 HOH 93 207 207 HOH HOH B . G 3 HOH 94 208 208 HOH HOH B . G 3 HOH 95 209 209 HOH HOH B . G 3 HOH 96 210 210 HOH HOH B . G 3 HOH 97 211 211 HOH HOH B . G 3 HOH 98 212 212 HOH HOH B . G 3 HOH 99 213 213 HOH HOH B . G 3 HOH 100 214 214 HOH HOH B . G 3 HOH 101 215 215 HOH HOH B . G 3 HOH 102 216 216 HOH HOH B . G 3 HOH 103 217 217 HOH HOH B . G 3 HOH 104 218 218 HOH HOH B . G 3 HOH 105 219 219 HOH HOH B . G 3 HOH 106 220 220 HOH HOH B . G 3 HOH 107 221 221 HOH HOH B . G 3 HOH 108 222 222 HOH HOH B . G 3 HOH 109 223 223 HOH HOH B . G 3 HOH 110 224 224 HOH HOH B . G 3 HOH 111 225 225 HOH HOH B . G 3 HOH 112 226 226 HOH HOH B . G 3 HOH 113 227 227 HOH HOH B . G 3 HOH 114 228 228 HOH HOH B . G 3 HOH 115 229 229 HOH HOH B . G 3 HOH 116 230 230 HOH HOH B . G 3 HOH 117 231 231 HOH HOH B . G 3 HOH 118 232 232 HOH HOH B . G 3 HOH 119 233 233 HOH HOH B . G 3 HOH 120 234 234 HOH HOH B . G 3 HOH 121 235 235 HOH HOH B . G 3 HOH 122 236 236 HOH HOH B . G 3 HOH 123 237 237 HOH HOH B . G 3 HOH 124 238 238 HOH HOH B . G 3 HOH 125 239 239 HOH HOH B . G 3 HOH 126 240 240 HOH HOH B . G 3 HOH 127 241 241 HOH HOH B . G 3 HOH 128 242 242 HOH HOH B . G 3 HOH 129 243 243 HOH HOH B . G 3 HOH 130 244 244 HOH HOH B . G 3 HOH 131 245 245 HOH HOH B . G 3 HOH 132 246 246 HOH HOH B . G 3 HOH 133 247 247 HOH HOH B . G 3 HOH 134 248 248 HOH HOH B . G 3 HOH 135 249 249 HOH HOH B . G 3 HOH 136 250 250 HOH HOH B . G 3 HOH 137 251 251 HOH HOH B . G 3 HOH 138 252 252 HOH HOH B . G 3 HOH 139 253 253 HOH HOH B . G 3 HOH 140 254 254 HOH HOH B . G 3 HOH 141 255 255 HOH HOH B . G 3 HOH 142 256 256 HOH HOH B . G 3 HOH 143 257 257 HOH HOH B . G 3 HOH 144 258 258 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 21 ? CD ? A GLU 21 CD 2 1 Y 1 A GLU 21 ? OE1 ? A GLU 21 OE1 3 1 Y 1 A GLU 21 ? OE2 ? A GLU 21 OE2 4 1 Y 1 B GLU 10 ? CD ? B GLU 10 CD 5 1 Y 1 B GLU 10 ? OE1 ? B GLU 10 OE1 6 1 Y 1 B GLU 10 ? OE2 ? B GLU 10 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.3.0021 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 MOLREP phasing . ? 4 ARP/wARP 'model building' . ? 5 # _cell.entry_id 3BYP _cell.length_a 60.331 _cell.length_b 60.331 _cell.length_c 92.137 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BYP _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3BYP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_percent_sol 45.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.60 _exptl_crystal_grow.pdbx_details ;Protein solution 15 mg/ml protein, 20mM Tris, pH 8.0; precipitant solution 0.2M ammonium sulfate, 15% PEG 4000, 0.1M sodium acetate, pH 4.60, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2006-02-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'BENT SINGLE-CRYSTAL SI(111), WITH FOCUSING MIRROR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9124 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F1 _diffrn_source.pdbx_wavelength 0.9124 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3BYP _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 21179 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.04200 _reflns.pdbx_netI_over_sigmaI 54.8000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.800 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 92.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.39300 _reflns_shell.meanI_over_sigI_obs 4.400 _reflns_shell.pdbx_redundancy 6.20 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BYP _refine.ls_number_reflns_obs 20053 _refine.ls_number_reflns_all 20053 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.71 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 98.9 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.186 _refine.ls_R_factor_R_free 0.224 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1086 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 28.23 _refine.aniso_B[1][1] -0.41000 _refine.aniso_B[2][2] -0.41000 _refine.aniso_B[3][3] 0.61000 _refine.aniso_B[1][2] -0.20000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details '2 TLS GROUPS USED' _refine.pdbx_starting_model 'CZRB WITH ZN BOUND' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.113 _refine.pdbx_overall_ESU_R_Free 0.112 _refine.overall_SU_ML 0.066 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.791 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1310 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 296 _refine_hist.number_atoms_total 1621 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 30.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 1375 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.202 1.985 ? 1855 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.661 5.000 ? 162 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 25.794 21.795 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.404 15.000 ? 241 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.097 15.000 ? 24 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 196 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1072 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.203 0.200 ? 631 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.301 0.200 ? 918 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.155 0.200 ? 197 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.223 0.200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.153 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.847 1.500 ? 848 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.299 2.000 ? 1320 'X-RAY DIFFRACTION' ? r_scbond_it 2.574 3.000 ? 565 'X-RAY DIFFRACTION' ? r_scangle_it 4.127 4.500 ? 535 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.74 _refine_ls_shell.number_reflns_R_work 1355 _refine_ls_shell.R_factor_R_work 0.2250 _refine_ls_shell.percent_reflns_obs 92.10 _refine_ls_shell.R_factor_R_free 0.3190 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3BYP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3BYP _struct.title 'Mode of Action of a Putative Zinc Transporter CzrB' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BYP _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'membrane protein, zinc transporter, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8VLX7_THETH _struct_ref.pdbx_db_accession Q8VLX7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQAT IHVEPEGERKRTNP ; _struct_ref.pdbx_align_begin 198 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BYP A 1 ? 94 ? Q8VLX7 198 ? 291 ? 1 94 2 1 3BYP B 1 ? 94 ? Q8VLX7 198 ? 291 ? 1 94 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 790 ? 1 MORE -7 ? 1 'SSA (A^2)' 9780 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 8 ? ARG A 24 ? PRO A 8 ARG A 24 1 ? 17 HELX_P HELX_P2 2 PRO A 55 ? PHE A 74 ? PRO A 55 PHE A 74 1 ? 20 HELX_P HELX_P3 3 PRO B 8 ? ILE B 23 ? PRO B 8 ILE B 23 1 ? 16 HELX_P HELX_P4 4 PRO B 55 ? PHE B 74 ? PRO B 55 PHE B 74 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 29 ? ALA A 38 ? GLU A 29 ALA A 38 A 2 ARG A 41 ? VAL A 50 ? ARG A 41 VAL A 50 A 3 LEU A 77 ? PRO A 85 ? LEU A 77 PRO A 85 B 1 GLU B 29 ? ALA B 38 ? GLU B 29 ALA B 38 B 2 ARG B 41 ? VAL B 50 ? ARG B 41 VAL B 50 B 3 LEU B 77 ? PRO B 85 ? LEU B 77 PRO B 85 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 38 ? N ALA A 38 O ARG A 41 ? O ARG A 41 A 2 3 N LEU A 48 ? N LEU A 48 O HIS A 82 ? O HIS A 82 B 1 2 N HIS B 31 ? N HIS B 31 O HIS B 47 ? O HIS B 47 B 2 3 N LEU B 48 ? N LEU B 48 O HIS B 82 ? O HIS B 82 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 95 ? 4 'BINDING SITE FOR RESIDUE SO4 B 95' AC2 Software A SO4 95 ? 4 'BINDING SITE FOR RESIDUE SO4 A 95' AC3 Software B SO4 96 ? 5 'BINDING SITE FOR RESIDUE SO4 B 96' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG B 16 ? ARG B 16 . ? 1_555 ? 2 AC1 4 HIS B 31 ? HIS B 31 . ? 1_555 ? 3 AC1 4 ASP B 32 ? ASP B 32 . ? 1_555 ? 4 AC1 4 LEU B 33 ? LEU B 33 . ? 1_555 ? 5 AC2 4 ARG A 16 ? ARG A 16 . ? 1_555 ? 6 AC2 4 HIS A 31 ? HIS A 31 . ? 1_555 ? 7 AC2 4 ASP A 32 ? ASP A 32 . ? 1_555 ? 8 AC2 4 LEU A 33 ? LEU A 33 . ? 1_555 ? 9 AC3 5 ARG A 37 ? ARG A 37 . ? 2_664 ? 10 AC3 5 ARG B 22 ? ARG B 22 . ? 6_575 ? 11 AC3 5 ARG B 51 ? ARG B 51 . ? 1_555 ? 12 AC3 5 GLY B 52 ? GLY B 52 . ? 1_555 ? 13 AC3 5 ASP B 53 ? ASP B 53 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 20 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 180 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.09 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 7.2580 49.4900 10.4450 -0.0599 0.0108 -0.0631 0.0239 0.0208 0.0444 5.6135 1.4710 1.0055 -2.1224 2.3253 -0.7109 -0.0368 -0.2311 -0.2216 0.1162 0.0863 0.0319 -0.0297 -0.1617 -0.0495 'X-RAY DIFFRACTION' 2 ? refined -17.1650 58.1130 14.2390 -0.0022 -0.0704 -0.0376 -0.0139 0.0210 -0.0106 1.9630 0.3027 2.8339 -0.2989 -0.7471 0.6524 0.0175 -0.0481 0.0046 0.1000 -0.0370 0.0197 0.1961 0.0438 0.0195 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 6 A 6 A 87 A 87 ? 'X-RAY DIFFRACTION' ? 2 2 B 6 B 6 B 87 B 87 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A LEU 2 ? A LEU 2 3 1 Y 1 A MET 3 ? A MET 3 4 1 Y 1 A ASP 4 ? A ASP 4 5 1 Y 1 A GLU 5 ? A GLU 5 6 1 Y 1 A GLU 88 ? A GLU 88 7 1 Y 1 A ARG 89 ? A ARG 89 8 1 Y 1 A LYS 90 ? A LYS 90 9 1 Y 1 A ARG 91 ? A ARG 91 10 1 Y 1 A THR 92 ? A THR 92 11 1 Y 1 A ASN 93 ? A ASN 93 12 1 Y 1 A PRO 94 ? A PRO 94 13 1 Y 1 B GLY 1 ? B GLY 1 14 1 Y 1 B LEU 2 ? B LEU 2 15 1 Y 1 B MET 3 ? B MET 3 16 1 Y 1 B ASP 4 ? B ASP 4 17 1 Y 1 B GLU 5 ? B GLU 5 18 1 Y 1 B GLU 88 ? B GLU 88 19 1 Y 1 B ARG 89 ? B ARG 89 20 1 Y 1 B LYS 90 ? B LYS 90 21 1 Y 1 B ARG 91 ? B ARG 91 22 1 Y 1 B THR 92 ? B THR 92 23 1 Y 1 B ASN 93 ? B ASN 93 24 1 Y 1 B PRO 94 ? B PRO 94 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SO4 S S N N 304 SO4 O1 O N N 305 SO4 O2 O N N 306 SO4 O3 O N N 307 SO4 O4 O N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 VAL N N N N 326 VAL CA C N S 327 VAL C C N N 328 VAL O O N N 329 VAL CB C N N 330 VAL CG1 C N N 331 VAL CG2 C N N 332 VAL OXT O N N 333 VAL H H N N 334 VAL H2 H N N 335 VAL HA H N N 336 VAL HB H N N 337 VAL HG11 H N N 338 VAL HG12 H N N 339 VAL HG13 H N N 340 VAL HG21 H N N 341 VAL HG22 H N N 342 VAL HG23 H N N 343 VAL HXT H N N 344 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SO4 S O1 doub N N 290 SO4 S O2 doub N N 291 SO4 S O3 sing N N 292 SO4 S O4 sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 VAL N CA sing N N 310 VAL N H sing N N 311 VAL N H2 sing N N 312 VAL CA C sing N N 313 VAL CA CB sing N N 314 VAL CA HA sing N N 315 VAL C O doub N N 316 VAL C OXT sing N N 317 VAL CB CG1 sing N N 318 VAL CB CG2 sing N N 319 VAL CB HB sing N N 320 VAL CG1 HG11 sing N N 321 VAL CG1 HG12 sing N N 322 VAL CG1 HG13 sing N N 323 VAL CG2 HG21 sing N N 324 VAL CG2 HG22 sing N N 325 VAL CG2 HG23 sing N N 326 VAL OXT HXT sing N N 327 # _pdbx_initial_refinement_model.accession_code 3BYR _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'CZRB WITH ZN BOUND' # _atom_sites.entry_id 3BYP _atom_sites.fract_transf_matrix[1][1] 0.016575 _atom_sites.fract_transf_matrix[1][2] 0.009570 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019139 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010853 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_