HEADER CELL ADHESION 17-JAN-08 3BZ5 TITLE FUNCTIONAL DOMAIN OF INLJ FROM LISTERIA MONOCYTOGENES INCLUDES A TITLE 2 CYSTEINE LADDER COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERNALIN-J; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FUNCTIONAL DOMAIN, UNP RESIDUES 52-508; COMPND 5 SYNONYM: INLJ; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 STRAIN: EGDE; SOURCE 4 GENE: LMO2821, INLJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 CODON+; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM30 KEYWDS LEUCINE RICH REPEAT (LRR), CYSTEINE LADDER, ASPARAGINE LADDER, KEYWDS 2 INTERNALIN, VIRULENCE FACTOR, SOLENOID, CELL WALL, LEUCINE-RICH KEYWDS 3 REPEAT, PEPTIDOGLYCAN-ANCHOR, SECRETED, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.BUBLITZ,C.HOLLAND,C.SABET,J.REICHELT,P.COSSART,D.W.HEINZ,H.BIERNE, AUTHOR 2 W.D.SCHUBERT REVDAT 4 01-NOV-23 3BZ5 1 REMARK REVDAT 3 11-OCT-17 3BZ5 1 REMARK REVDAT 2 24-FEB-09 3BZ5 1 VERSN REVDAT 1 17-JUN-08 3BZ5 0 JRNL AUTH M.BUBLITZ,C.HOLLAND,C.SABET,J.REICHELT,P.COSSART,D.W.HEINZ, JRNL AUTH 2 H.BIERNE,W.D.SCHUBERT JRNL TITL CRYSTAL STRUCTURE AND STANDARDIZED GEOMETRIC ANALYSIS OF JRNL TITL 2 INLJ, A LISTERIAL VIRULENCE FACTOR AND LEUCINE-RICH REPEAT JRNL TITL 3 PROTEIN WITH A NOVEL CYSTEINE LADDER. JRNL REF J.MOL.BIOL. V. 378 87 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18343406 JRNL DOI 10.1016/J.JMB.2008.01.100 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 17059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 919 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1139 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3491 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.605 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3552 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2191 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4857 ; 1.815 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5487 ; 1.733 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 5.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;42.172 ;27.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 621 ;12.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 3.287 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3920 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 581 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 650 ; 0.172 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2289 ; 0.153 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1661 ; 0.142 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1722 ; 0.069 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.112 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2914 ; 3.151 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 899 ; 0.517 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3696 ; 3.968 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1444 ; 3.145 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1160 ; 4.312 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BZ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.817 REMARK 200 MONOCHROMATOR : GE(111) TRIANGULAR BENT REMARK 200 COMPRESSING 7 FANKUCHEN CUT REMARK 200 OPTICS : SI [111], HORIZONTALLY FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 21.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : 0.39100 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1O6V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1M NA ACETATE, REMARK 280 PH 4.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.63600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 79.63600 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 79.63600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 79.63600 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 79.63600 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 79.63600 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 79.63600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.63600 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 79.63600 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 79.63600 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 79.63600 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 79.63600 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 79.63600 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 79.63600 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 79.63600 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 79.63600 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 79.63600 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 79.63600 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 79.63600 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 79.63600 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 79.63600 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 79.63600 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 79.63600 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 79.63600 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 79.63600 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 79.63600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 52 REMARK 465 ALA A 503 REMARK 465 PRO A 504 REMARK 465 GLN A 505 REMARK 465 PRO A 506 REMARK 465 ILE A 507 REMARK 465 LYS A 508 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 135 46.85 -89.95 REMARK 500 SER A 145 61.50 60.27 REMARK 500 THR A 166 76.05 59.31 REMARK 500 ASN A 177 66.40 -118.69 REMARK 500 CYS A 185 42.33 -108.31 REMARK 500 ASN A 188 -168.10 -110.77 REMARK 500 LYS A 210 -37.14 77.17 REMARK 500 THR A 251 61.68 61.36 REMARK 500 ASN A 262 52.81 -98.99 REMARK 500 ASN A 273 -163.85 -129.74 REMARK 500 PRO A 295 49.58 -87.40 REMARK 500 GLU A 341 134.99 -170.04 REMARK 500 ALA A 357 -12.82 74.86 REMARK 500 ASN A 368 65.71 -110.81 REMARK 500 ASN A 389 65.98 -100.64 REMARK 500 CYS A 397 50.10 -145.91 REMARK 500 ALA A 400 -156.60 -111.37 REMARK 500 ASN A 416 -62.96 -92.25 REMARK 500 ASN A 417 63.71 -66.45 REMARK 500 ALA A 420 37.64 -147.00 REMARK 500 ASN A 434 -141.00 66.70 REMARK 500 ASN A 435 39.03 -99.55 REMARK 500 LEU A 445 89.70 -67.15 REMARK 500 PRO A 480 38.90 -67.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 458 ASP A 459 -145.94 REMARK 500 ASP A 459 GLY A 460 136.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2 DBREF 3BZ5 A 52 508 UNP Q8Y3L4 INLJ_LISMO 52 508 SEQRES 1 A 457 ASN THR LEU LYS ALA GLY GLN THR GLN SER PHE ASN ASP SEQRES 2 A 457 TRP PHE PRO ASP ASP ASN PHE ALA SER GLU VAL ALA ALA SEQRES 3 A 457 ALA PHE GLU MET GLN ALA THR ASP THR ILE SER GLU GLU SEQRES 4 A 457 GLN LEU ALA THR LEU THR SER LEU ASP CYS HIS ASN SER SEQRES 5 A 457 SER ILE THR ASP MET THR GLY ILE GLU LYS LEU THR GLY SEQRES 6 A 457 LEU THR LYS LEU ILE CYS THR SER ASN ASN ILE THR THR SEQRES 7 A 457 LEU ASP LEU SER GLN ASN THR ASN LEU THR TYR LEU ALA SEQRES 8 A 457 CYS ASP SER ASN LYS LEU THR ASN LEU ASP VAL THR PRO SEQRES 9 A 457 LEU THR LYS LEU THR TYR LEU ASN CYS ASP THR ASN LYS SEQRES 10 A 457 LEU THR LYS LEU ASP VAL SER GLN ASN PRO LEU LEU THR SEQRES 11 A 457 TYR LEU ASN CYS ALA ARG ASN THR LEU THR GLU ILE ASP SEQRES 12 A 457 VAL SER HIS ASN THR GLN LEU THR GLU LEU ASP CYS HIS SEQRES 13 A 457 LEU ASN LYS LYS ILE THR LYS LEU ASP VAL THR PRO GLN SEQRES 14 A 457 THR GLN LEU THR THR LEU ASP CYS SER PHE ASN LYS ILE SEQRES 15 A 457 THR GLU LEU ASP VAL SER GLN ASN LYS LEU LEU ASN ARG SEQRES 16 A 457 LEU ASN CYS ASP THR ASN ASN ILE THR LYS LEU ASP LEU SEQRES 17 A 457 ASN GLN ASN ILE GLN LEU THR PHE LEU ASP CYS SER SER SEQRES 18 A 457 ASN LYS LEU THR GLU ILE ASP VAL THR PRO LEU THR GLN SEQRES 19 A 457 LEU THR TYR PHE ASP CYS SER VAL ASN PRO LEU THR GLU SEQRES 20 A 457 LEU ASP VAL SER THR LEU SER LYS LEU THR THR LEU HIS SEQRES 21 A 457 CYS ILE GLN THR ASP LEU LEU GLU ILE ASP LEU THR HIS SEQRES 22 A 457 ASN THR GLN LEU ILE TYR PHE GLN ALA GLU GLY CYS ARG SEQRES 23 A 457 LYS ILE LYS GLU LEU ASP VAL THR HIS ASN THR GLN LEU SEQRES 24 A 457 TYR LEU LEU ASP CYS GLN ALA ALA GLY ILE THR GLU LEU SEQRES 25 A 457 ASP LEU SER GLN ASN PRO LYS LEU VAL TYR LEU TYR LEU SEQRES 26 A 457 ASN ASN THR GLU LEU THR GLU LEU ASP VAL SER HIS ASN SEQRES 27 A 457 THR LYS LEU LYS SER LEU SER CYS VAL ASN ALA HIS ILE SEQRES 28 A 457 GLN ASP PHE SER SER VAL GLY LYS ILE PRO ALA LEU ASN SEQRES 29 A 457 ASN ASN PHE GLU ALA GLU GLY GLN THR ILE THR MET PRO SEQRES 30 A 457 LYS GLU THR LEU THR ASN ASN SER LEU THR ILE ALA VAL SEQRES 31 A 457 SER PRO ASP LEU LEU ASP GLN PHE GLY ASN PRO MET ASN SEQRES 32 A 457 ILE GLU PRO GLY ASP GLY GLY VAL TYR ASP GLN ALA THR SEQRES 33 A 457 ASN THR ILE THR TRP GLU ASN LEU SER THR ASP ASN PRO SEQRES 34 A 457 ALA VAL THR TYR THR PHE THR SER GLU ASN GLY ALA ILE SEQRES 35 A 457 VAL GLY THR VAL THR THR PRO PHE GLU ALA PRO GLN PRO SEQRES 36 A 457 ILE LYS HET SO4 A 1 5 HET CL A 2 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 CL CL 1- FORMUL 4 HOH *130(H2 O) HELIX 1 1 PHE A 62 PHE A 66 1 5 HELIX 2 2 ASP A 68 PHE A 79 1 12 HELIX 3 3 GLU A 89 ALA A 93 1 5 HELIX 4 4 GLY A 110 LEU A 114 5 5 HELIX 5 5 SER A 407 LYS A 410 5 4 HELIX 6 6 PRO A 412 ASN A 416 5 5 SHEET 1 A 2 THR A 59 SER A 61 0 SHEET 2 A 2 THR A 86 SER A 88 -1 O ILE A 87 N GLN A 60 SHEET 1 B19 SER A 97 ASP A 99 0 SHEET 2 B19 LYS A 119 ILE A 121 1 O LYS A 119 N LEU A 98 SHEET 3 B19 TYR A 140 ALA A 142 1 O ALA A 142 N LEU A 120 SHEET 4 B19 TYR A 161 ASN A 163 1 O TYR A 161 N LEU A 141 SHEET 5 B19 TYR A 182 ASN A 184 1 O TYR A 182 N LEU A 162 SHEET 6 B19 GLU A 203 ASP A 205 1 O ASP A 205 N LEU A 183 SHEET 7 B19 THR A 225 ASP A 227 1 O ASP A 227 N LEU A 204 SHEET 8 B19 ARG A 246 ASN A 248 1 O ASN A 248 N LEU A 226 SHEET 9 B19 PHE A 267 ASP A 269 1 O ASP A 269 N LEU A 247 SHEET 10 B19 TYR A 288 ASP A 290 1 O TYR A 288 N LEU A 268 SHEET 11 B19 THR A 309 HIS A 311 1 O HIS A 311 N PHE A 289 SHEET 12 B19 TYR A 330 GLN A 332 1 O TYR A 330 N LEU A 310 SHEET 13 B19 LEU A 352 ASP A 354 1 O ASP A 354 N PHE A 331 SHEET 14 B19 TYR A 373 TYR A 375 1 O TYR A 375 N LEU A 353 SHEET 15 B19 SER A 394 SER A 396 1 O SER A 394 N LEU A 374 SHEET 16 B19 PHE A 418 THR A 426 1 O GLU A 419 N LEU A 395 SHEET 17 B19 ILE A 493 PRO A 500 1 O THR A 496 N ILE A 425 SHEET 18 B19 TYR A 484 THR A 487 -1 N PHE A 486 O GLY A 495 SHEET 19 B19 ASN A 454 PRO A 457 -1 N ASN A 454 O THR A 487 SHEET 1 C18 SER A 97 ASP A 99 0 SHEET 2 C18 LYS A 119 ILE A 121 1 O LYS A 119 N LEU A 98 SHEET 3 C18 TYR A 140 ALA A 142 1 O ALA A 142 N LEU A 120 SHEET 4 C18 TYR A 161 ASN A 163 1 O TYR A 161 N LEU A 141 SHEET 5 C18 TYR A 182 ASN A 184 1 O TYR A 182 N LEU A 162 SHEET 6 C18 GLU A 203 ASP A 205 1 O ASP A 205 N LEU A 183 SHEET 7 C18 THR A 225 ASP A 227 1 O ASP A 227 N LEU A 204 SHEET 8 C18 ARG A 246 ASN A 248 1 O ASN A 248 N LEU A 226 SHEET 9 C18 PHE A 267 ASP A 269 1 O ASP A 269 N LEU A 247 SHEET 10 C18 TYR A 288 ASP A 290 1 O TYR A 288 N LEU A 268 SHEET 11 C18 THR A 309 HIS A 311 1 O HIS A 311 N PHE A 289 SHEET 12 C18 TYR A 330 GLN A 332 1 O TYR A 330 N LEU A 310 SHEET 13 C18 LEU A 352 ASP A 354 1 O ASP A 354 N PHE A 331 SHEET 14 C18 TYR A 373 TYR A 375 1 O TYR A 375 N LEU A 353 SHEET 15 C18 SER A 394 SER A 396 1 O SER A 394 N LEU A 374 SHEET 16 C18 PHE A 418 THR A 426 1 O GLU A 419 N LEU A 395 SHEET 17 C18 ILE A 493 PRO A 500 1 O THR A 496 N ILE A 425 SHEET 18 C18 ALA A 481 VAL A 482 -1 N VAL A 482 O THR A 499 SHEET 1 D 3 LEU A 437 ALA A 440 0 SHEET 2 D 3 THR A 469 TRP A 472 -1 O ILE A 470 N ILE A 439 SHEET 3 D 3 GLY A 461 ASP A 464 -1 N ASP A 464 O THR A 469 SITE 1 AC1 2 HIS A 101 ASN A 102 SITE 1 AC2 1 SER A 61 CRYST1 159.272 159.272 159.272 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006279 0.00000