HEADER MEMBRANE PROTEIN, PROTEIN TRANSPORT 18-JAN-08 3BZY TITLE CRYSTAL STRUCTURE OF THE MUTATED Y316D ESCU C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESCU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 215-262; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ESCU; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 263-345; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: EPEC E2348/69; SOURCE 5 GENE: ESCU; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 562; SOURCE 14 STRAIN: EPEC E2348/69; SOURCE 15 GENE: ESCU; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS AUTO CLEAVAGE PROTEIN, FLAGELLA, INTEIN, T3SS, MEMBRANE, MEMBRANE KEYWDS 2 PROTEIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.ZARIVACH,W.DENG,M.VUCKOVIC,H.B.FELISE,H.V.NGUYEN,S.I.MILLER, AUTHOR 2 B.B.FINLAY,N.C.J.STRYNADKA REVDAT 6 21-FEB-24 3BZY 1 REMARK REVDAT 5 20-OCT-21 3BZY 1 REMARK SEQADV REVDAT 4 25-OCT-17 3BZY 1 REMARK REVDAT 3 24-FEB-09 3BZY 1 VERSN REVDAT 2 06-MAY-08 3BZY 1 JRNL REVDAT 1 22-APR-08 3BZY 0 JRNL AUTH R.ZARIVACH,W.DENG,M.VUCKOVIC,H.B.FELISE,H.V.NGUYEN, JRNL AUTH 2 S.I.MILLER,B.B.FINLAY,N.C.STRYNADKA JRNL TITL STRUCTURAL ANALYSIS OF THE ESSENTIAL SELF-CLEAVING TYPE III JRNL TITL 2 SECRETION PROTEINS ESCU AND SPAS. JRNL REF NATURE V. 453 124 2008 JRNL REFN ISSN 0028-0836 JRNL PMID 18451864 JRNL DOI 10.1038/NATURE06832 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 34527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1824 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1924 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.957 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 918 ; 0.036 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 623 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1266 ; 3.032 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1566 ; 1.337 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 126 ; 8.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 35 ;43.492 ;26.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 184 ;12.845 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;18.300 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 154 ; 0.167 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1013 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 153 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 175 ; 0.274 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 645 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 445 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 485 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 50 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.376 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.378 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 742 ; 3.476 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 222 ; 1.543 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 944 ; 3.940 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 394 ; 6.342 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 313 ; 7.857 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1824 ; 3.200 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 115 ;17.384 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1517 ; 7.790 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36351 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LI2SO4, BIS-TRIS, PEG3350, NACL, PH REMARK 280 5.5, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.94100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.41600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.09300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.94100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.41600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.09300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.94100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.41600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.09300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.94100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 29.41600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.09300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13500 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -55.88200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -58.83200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -58.83200 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -55.88200 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5530 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -58.83200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -55.88200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -58.83200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 HIS A 211 REMARK 465 MET A 212 REMARK 465 ALA A 213 REMARK 465 SER A 214 REMARK 465 MET A 215 REMARK 465 SER A 216 REMARK 465 LYS A 217 REMARK 465 ASP A 218 REMARK 465 GLU A 219 REMARK 465 VAL A 220 REMARK 465 LYS A 221 REMARK 465 ARG A 222 REMARK 465 GLU A 223 REMARK 465 ALA A 224 REMARK 465 LYS A 225 REMARK 465 ASP A 226 REMARK 465 THR A 227 REMARK 465 ASP A 228 REMARK 465 GLY A 229 REMARK 465 ASN A 230 REMARK 465 PRO A 231 REMARK 465 GLU A 232 REMARK 465 ILE A 233 REMARK 465 LYS A 234 REMARK 465 GLY A 235 REMARK 465 GLU A 236 REMARK 465 ARG A 237 REMARK 465 ARG A 238 REMARK 465 ARG A 239 REMARK 465 LEU A 240 REMARK 465 HIS A 241 REMARK 465 SER A 242 REMARK 465 GLU A 243 REMARK 465 ILE A 244 REMARK 465 GLN A 245 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO B 263 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 254 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG GLU B 299 O HOH B 130 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 259 CB ILE A 259 CG1 0.197 REMARK 500 TYR B 272 CD1 TYR B 272 CE1 0.091 REMARK 500 TYR B 272 CZ TYR B 272 CE2 -0.103 REMARK 500 GLU B 276 CG GLU B 276 CD -0.224 REMARK 500 GLU B 276 CD GLU B 276 OE1 -0.165 REMARK 500 THR B 277 C THR B 277 O 0.125 REMARK 500 ARG B 313 CZ ARG B 313 NH1 -0.084 REMARK 500 GLU B 327 CD GLU B 327 OE2 -0.069 REMARK 500 ILE B 339 CA ILE B 339 CB 0.146 REMARK 500 TYR B 345 C TYR B 345 O 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 276 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 GLU B 276 N - CA - C ANGL. DEV. = 25.1 DEGREES REMARK 500 GLU B 276 CA - C - O ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO B 278 C - N - CA ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG B 313 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 313 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 LEU B 336 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 273 -66.05 -134.46 REMARK 500 LEU B 274 164.57 151.58 REMARK 500 GLU B 276 -67.11 -108.89 REMARK 500 GLU B 276 88.62 127.87 REMARK 500 ASP B 288 -128.86 55.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 263 THR B 264 114.09 REMARK 500 LYS B 273 LEU B 274 -146.89 REMARK 500 GLU B 276 THR B 277 120.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BZO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURAL OF NATIVE ESCU C-TERMINAL DOMAIN WITH SPACE REMARK 900 GROUP I 2 2 2 REMARK 900 RELATED ID: 3BZL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURAL OF NATIVE ESCU C-TERMINAL DOMAIN WITH SPACE REMARK 900 GROUP C 1 2 1 REMARK 900 RELATED ID: 3BZP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTATED N262A ESCU C-TERMINAL DOMAIN REMARK 900 RELATED ID: 3BZR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTATED N262D ESCU C-TERMINAL DOMAIN REMARK 900 RELATED ID: 3BZS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTATED N262D ESCU C-TERMINAL DOMAIN REMARK 900 RELATED ID: 3BZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTATED P263A ESCU C-TERMINAL DOMAIN REMARK 900 RELATED ID: 3BZV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTATED T264A ESCU C-TERMINAL DOMAIN REMARK 900 RELATED ID: 3BZX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTATED H265A ESCU C-TERMINAL DOMAIN REMARK 900 RELATED ID: 3BZZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTATED R313T ESCU C-TERMINAL DOMAIN REMARK 900 RELATED ID: 3C00 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTATED G247T ESCU C-TERMINAL DOMAIN REMARK 900 RELATED ID: 3C01 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NATIVE SPAS C-TERMINAL DOMAIN REMARK 900 RELATED ID: 3C03 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTATED P263A ESCU C-TERMINAL DOMAIN DBREF 3BZY A 215 262 UNP Q9AJ26 Q9AJ26_ECOLX 215 262 DBREF 3BZY B 263 345 UNP Q9AJ26 Q9AJ26_ECOLX 263 345 SEQADV 3BZY GLY A 209 UNP Q9AJ26 EXPRESSION TAG SEQADV 3BZY SER A 210 UNP Q9AJ26 EXPRESSION TAG SEQADV 3BZY HIS A 211 UNP Q9AJ26 EXPRESSION TAG SEQADV 3BZY MET A 212 UNP Q9AJ26 EXPRESSION TAG SEQADV 3BZY ALA A 213 UNP Q9AJ26 EXPRESSION TAG SEQADV 3BZY SER A 214 UNP Q9AJ26 EXPRESSION TAG SEQADV 3BZY ASP B 316 UNP Q9AJ26 TYR 316 ENGINEERED MUTATION SEQRES 1 A 54 GLY SER HIS MET ALA SER MET SER LYS ASP GLU VAL LYS SEQRES 2 A 54 ARG GLU ALA LYS ASP THR ASP GLY ASN PRO GLU ILE LYS SEQRES 3 A 54 GLY GLU ARG ARG ARG LEU HIS SER GLU ILE GLN SER GLY SEQRES 4 A 54 SER LEU ALA ASN ASN ILE LYS LYS SER THR VAL ILE VAL SEQRES 5 A 54 LYS ASN SEQRES 1 B 83 PRO THR HIS ILE ALA ILE CYS LEU TYR TYR LYS LEU GLY SEQRES 2 B 83 GLU THR PRO LEU PRO LEU VAL ILE GLU THR GLY LYS ASP SEQRES 3 B 83 ALA LYS ALA LEU GLN ILE ILE LYS LEU ALA GLU LEU TYR SEQRES 4 B 83 ASP ILE PRO VAL ILE GLU ASP ILE PRO LEU ALA ARG SER SEQRES 5 B 83 LEU ASP LYS ASN ILE HIS LYS GLY GLN TYR ILE THR GLU SEQRES 6 B 83 ASP PHE PHE GLU PRO VAL ALA GLN LEU ILE ARG ILE ALA SEQRES 7 B 83 ILE ASP LEU ASP TYR HET SO4 B 1 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *115(H2 O) HELIX 1 1 GLY A 247 SER A 256 1 10 HELIX 2 2 ASP B 288 TYR B 301 1 14 HELIX 3 3 ASP B 308 ILE B 319 1 12 HELIX 4 4 THR B 326 ASP B 328 5 3 HELIX 5 5 PHE B 329 ILE B 341 1 13 SHEET 1 A 4 LEU B 281 LYS B 287 0 SHEET 2 A 4 ILE B 266 TYR B 271 -1 N CYS B 269 O GLU B 284 SHEET 3 A 4 VAL A 258 LYS A 261 -1 N VAL A 258 O LEU B 270 SHEET 4 A 4 VAL B 305 GLU B 307 1 O ILE B 306 N ILE A 259 SITE 1 AC1 4 ARG B 313 SER B 314 LYS B 317 ASN B 318 CRYST1 55.882 58.832 72.186 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017895 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013853 0.00000