data_3C02 # _entry.id 3C02 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3C02 RCSB RCSB046171 WWPDB D_1000046171 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1FX8 _pdbx_database_related.details 'Crystal structure of aquaglyceroporin from E. coli in complex with substrate glycerol' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3C02 _pdbx_database_status.recvd_initial_deposition_date 2008-01-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Newby, Z.E.' 1 'Stroud, R.M.' 2 'Center for Structures of Membrane Proteins (CSMP)' 3 # _citation.id primary _citation.title 'Crystal structure of the aquaglyceroporin PfAQP from the malarial parasite Plasmodium falciparum.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 15 _citation.page_first 619 _citation.page_last 625 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18500352 _citation.pdbx_database_id_DOI 10.1038/nsmb.1431 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Newby, Z.E.' 1 ? primary ;O'Connell, J. ; 2 ? primary 'Robles-Colmenares, Y.' 3 ? primary 'Khademi, S.' 4 ? primary 'Miercke, L.J.' 5 ? primary 'Stroud, R.M.' 6 ? # _cell.entry_id 3C02 _cell.length_a 92.430 _cell.length_b 92.430 _cell.length_c 193.168 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3C02 _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Aquaglyceroporin 28319.070 1 ? ? ? ? 2 non-polymer man 'octyl beta-D-glucopyranoside' 292.369 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 4 water nat water 18.015 56 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHMLFYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSI NKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENI CGKFHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDK VICPLVDLANNEKDGVDL ; _entity_poly.pdbx_seq_one_letter_code_can ;MHMLFYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSI NKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENI CGKFHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDK VICPLVDLANNEKDGVDL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 MET n 1 4 LEU n 1 5 PHE n 1 6 TYR n 1 7 LYS n 1 8 SER n 1 9 TYR n 1 10 VAL n 1 11 ARG n 1 12 GLU n 1 13 PHE n 1 14 ILE n 1 15 GLY n 1 16 GLU n 1 17 PHE n 1 18 LEU n 1 19 GLY n 1 20 THR n 1 21 PHE n 1 22 VAL n 1 23 LEU n 1 24 MET n 1 25 PHE n 1 26 LEU n 1 27 GLY n 1 28 GLU n 1 29 GLY n 1 30 ALA n 1 31 THR n 1 32 ALA n 1 33 ASN n 1 34 PHE n 1 35 HIS n 1 36 THR n 1 37 THR n 1 38 GLY n 1 39 LEU n 1 40 SER n 1 41 GLY n 1 42 ASP n 1 43 TRP n 1 44 TYR n 1 45 LYS n 1 46 LEU n 1 47 CYS n 1 48 LEU n 1 49 GLY n 1 50 TRP n 1 51 GLY n 1 52 LEU n 1 53 ALA n 1 54 VAL n 1 55 PHE n 1 56 PHE n 1 57 GLY n 1 58 ILE n 1 59 LEU n 1 60 VAL n 1 61 SER n 1 62 ALA n 1 63 LYS n 1 64 LEU n 1 65 SER n 1 66 GLY n 1 67 ALA n 1 68 HIS n 1 69 LEU n 1 70 ASN n 1 71 LEU n 1 72 ALA n 1 73 VAL n 1 74 SER n 1 75 ILE n 1 76 GLY n 1 77 LEU n 1 78 SER n 1 79 SER n 1 80 ILE n 1 81 ASN n 1 82 LYS n 1 83 PHE n 1 84 ASP n 1 85 LEU n 1 86 LYS n 1 87 LYS n 1 88 ILE n 1 89 PRO n 1 90 VAL n 1 91 TYR n 1 92 PHE n 1 93 PHE n 1 94 ALA n 1 95 GLN n 1 96 LEU n 1 97 LEU n 1 98 GLY n 1 99 ALA n 1 100 PHE n 1 101 VAL n 1 102 GLY n 1 103 THR n 1 104 SER n 1 105 THR n 1 106 VAL n 1 107 TYR n 1 108 GLY n 1 109 LEU n 1 110 TYR n 1 111 HIS n 1 112 GLY n 1 113 PHE n 1 114 ILE n 1 115 SER n 1 116 ASN n 1 117 SER n 1 118 LYS n 1 119 ILE n 1 120 PRO n 1 121 GLN n 1 122 PHE n 1 123 ALA n 1 124 TRP n 1 125 GLU n 1 126 THR n 1 127 SER n 1 128 ARG n 1 129 ASN n 1 130 PRO n 1 131 SER n 1 132 ILE n 1 133 SER n 1 134 LEU n 1 135 THR n 1 136 GLY n 1 137 ALA n 1 138 PHE n 1 139 PHE n 1 140 ASN n 1 141 GLU n 1 142 LEU n 1 143 ILE n 1 144 LEU n 1 145 THR n 1 146 GLY n 1 147 ILE n 1 148 LEU n 1 149 LEU n 1 150 LEU n 1 151 VAL n 1 152 ILE n 1 153 LEU n 1 154 VAL n 1 155 VAL n 1 156 VAL n 1 157 ASP n 1 158 GLU n 1 159 ASN n 1 160 ILE n 1 161 CYS n 1 162 GLY n 1 163 LYS n 1 164 PHE n 1 165 HIS n 1 166 ILE n 1 167 LEU n 1 168 LYS n 1 169 LEU n 1 170 SER n 1 171 SER n 1 172 VAL n 1 173 VAL n 1 174 GLY n 1 175 LEU n 1 176 ILE n 1 177 ILE n 1 178 LEU n 1 179 CYS n 1 180 ILE n 1 181 GLY n 1 182 ILE n 1 183 THR n 1 184 PHE n 1 185 GLY n 1 186 GLY n 1 187 ASN n 1 188 THR n 1 189 GLY n 1 190 PHE n 1 191 ALA n 1 192 LEU n 1 193 ASN n 1 194 PRO n 1 195 SER n 1 196 ARG n 1 197 ASP n 1 198 LEU n 1 199 GLY n 1 200 SER n 1 201 ARG n 1 202 PHE n 1 203 LEU n 1 204 SER n 1 205 LEU n 1 206 ILE n 1 207 ALA n 1 208 TYR n 1 209 GLY n 1 210 LYS n 1 211 ASP n 1 212 THR n 1 213 PHE n 1 214 THR n 1 215 LYS n 1 216 ASP n 1 217 ASN n 1 218 PHE n 1 219 TYR n 1 220 PHE n 1 221 TRP n 1 222 VAL n 1 223 PRO n 1 224 LEU n 1 225 VAL n 1 226 ALA n 1 227 PRO n 1 228 CYS n 1 229 VAL n 1 230 GLY n 1 231 SER n 1 232 VAL n 1 233 VAL n 1 234 PHE n 1 235 CYS n 1 236 GLN n 1 237 PHE n 1 238 TYR n 1 239 ASP n 1 240 LYS n 1 241 VAL n 1 242 ILE n 1 243 CYS n 1 244 PRO n 1 245 LEU n 1 246 VAL n 1 247 ASP n 1 248 LEU n 1 249 ALA n 1 250 ASN n 1 251 ASN n 1 252 GLU n 1 253 LYS n 1 254 ASP n 1 255 GLY n 1 256 VAL n 1 257 ASP n 1 258 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'malaria parasite' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AQP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Plasmodium falciparum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'C43(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET29b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8WPZ6_PLAFA _struct_ref.pdbx_db_accession Q8WPZ6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MHMLFYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSI NKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENI CGKFHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDK VICPLVDLANNEKDGVDL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3C02 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 258 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8WPZ6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 258 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 258 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BOG D-saccharide n 'octyl beta-D-glucopyranoside' ? 'C14 H28 O6' 292.369 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3C02 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.64 _exptl_crystal.density_percent_sol 66.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_details ;17% PEG MME 2000, 0.1M Sodium citrate, 15% Glycerol, 0.04M n-octyl-B-D-glucopyranoside, 0.01 Nickel sulfate, 0.01M DTT, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-07-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double flat crystal, Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11587 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.11587 # _reflns.entry_id 3C02 _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I 1.0 _reflns.d_resolution_high 2.05 _reflns.d_resolution_low 46.2 _reflns.number_all 25478 _reflns.number_obs 24719 _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value 0.060 _reflns.pdbx_netI_over_sigmaI 28.8 _reflns.B_iso_Wilson_estimate 47.9 _reflns.pdbx_redundancy 15.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.12 _reflns_shell.percent_possible_all 69.9 _reflns_shell.Rmerge_I_obs 0.478 _reflns_shell.pdbx_Rsym_value 0.435 _reflns_shell.meanI_over_sigI_obs 2.25 _reflns_shell.pdbx_redundancy 8.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1819 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3C02 _refine.ls_number_reflns_obs 24179 _refine.ls_number_reflns_all 24719 _refine.pdbx_ls_sigma_I 1.0 _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.2 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs 95.65 _refine.ls_R_factor_obs 0.18175 _refine.ls_R_factor_all 0.18400 _refine.ls_R_factor_R_work 0.18088 _refine.ls_R_factor_R_free 0.19824 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1299 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.B_iso_mean 37.452 _refine.aniso_B[1][1] 1.51 _refine.aniso_B[2][2] 1.51 _refine.aniso_B[3][3] -3.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1FX8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.134 _refine.pdbx_overall_ESU_R_Free 0.120 _refine.overall_SU_ML 0.094 _refine.overall_SU_B 7.214 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1853 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 1959 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 46.2 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1981 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.628 1.975 ? 2696 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.374 5.000 ? 253 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.083 23.286 ? 70 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.646 15.000 ? 301 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.794 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.126 0.200 ? 324 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1436 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.224 0.200 ? 1089 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.318 0.200 ? 1457 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.112 0.200 ? 96 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.190 0.200 ? 56 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.218 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.854 1.500 ? 1249 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.329 2.000 ? 1958 'X-RAY DIFFRACTION' ? r_scbond_it 2.395 3.000 ? 846 'X-RAY DIFFRACTION' ? r_scangle_it 3.346 4.500 ? 731 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.05 _refine_ls_shell.d_res_low 2.11 _refine_ls_shell.number_reflns_R_work 1231 _refine_ls_shell.R_factor_R_work 0.232 _refine_ls_shell.percent_reflns_obs 67.18 _refine_ls_shell.R_factor_R_free 0.242 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3C02 _struct.title 'X-ray structure of the aquaglyceroporin from Plasmodium falciparum' _struct.pdbx_descriptor Aquaglyceroporin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3C02 _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;Membrane protein, glycerol, water, transport, Structural Genomics, PSI-2, Protein Structure Initiative, Center for Structures of Membrane Proteins, CSMP, Porin, Transmembrane ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? THR A 37 ? SER A 8 THR A 37 1 ? 30 HELX_P HELX_P2 2 ASP A 42 ? GLY A 66 ? ASP A 42 GLY A 66 1 ? 25 HELX_P HELX_P3 3 ASN A 70 ? ILE A 80 ? ASN A 70 ILE A 80 1 ? 11 HELX_P HELX_P4 4 ASP A 84 ? LYS A 86 ? ASP A 84 LYS A 86 5 ? 3 HELX_P HELX_P5 5 LYS A 87 ? TYR A 110 ? LYS A 87 TYR A 110 1 ? 24 HELX_P HELX_P6 6 TYR A 110 ? ASN A 116 ? TYR A 110 ASN A 116 1 ? 7 HELX_P HELX_P7 7 SER A 133 ? ASP A 157 ? SER A 133 ASP A 157 1 ? 25 HELX_P HELX_P8 8 ASP A 157 ? GLY A 162 ? ASP A 157 GLY A 162 1 ? 6 HELX_P HELX_P9 9 HIS A 165 ? GLY A 189 ? HIS A 165 GLY A 189 1 ? 25 HELX_P HELX_P10 10 ASN A 193 ? GLY A 209 ? ASN A 193 GLY A 209 1 ? 17 HELX_P HELX_P11 11 LYS A 210 ? TYR A 219 ? LYS A 210 TYR A 219 1 ? 10 HELX_P HELX_P12 12 PHE A 220 ? VAL A 241 ? PHE A 220 VAL A 241 1 ? 22 HELX_P HELX_P13 13 VAL A 241 ? ALA A 249 ? VAL A 241 ALA A 249 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 3C02 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3C02 _atom_sites.fract_transf_matrix[1][1] 0.010819 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010819 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005177 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 HIS 2 2 ? ? ? A . n A 1 3 MET 3 3 ? ? ? A . n A 1 4 LEU 4 4 ? ? ? A . n A 1 5 PHE 5 5 ? ? ? A . n A 1 6 TYR 6 6 ? ? ? A . n A 1 7 LYS 7 7 ? ? ? A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 TYR 9 9 9 TYR SER A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 CYS 47 47 47 CYS CYS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 TRP 50 50 50 TRP TRP A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LYS 86 86 86 LYS ALA A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 HIS 111 111 111 HIS HIS A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 TRP 124 124 124 TRP TRP A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 ASN 129 129 129 ASN ASN A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 CYS 161 161 161 CYS CYS A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 HIS 165 165 165 HIS HIS A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 LYS 168 168 168 LYS LYS A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 ILE 177 177 177 ILE ILE A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 CYS 179 179 179 CYS CYS A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 GLY 181 181 181 GLY GLY A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 THR 183 183 183 THR THR A . n A 1 184 PHE 184 184 184 PHE PHE A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 ASN 187 187 187 ASN ASN A . n A 1 188 THR 188 188 188 THR THR A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 PHE 190 190 190 PHE PHE A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 SER 195 195 195 SER SER A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 GLY 199 199 199 GLY GLY A . n A 1 200 SER 200 200 200 SER SER A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 PHE 202 202 202 PHE PHE A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 ALA 207 207 207 ALA ALA A . n A 1 208 TYR 208 208 208 TYR TYR A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 LYS 210 210 210 LYS ALA A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 THR 212 212 212 THR THR A . n A 1 213 PHE 213 213 213 PHE PHE A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 PHE 218 218 218 PHE PHE A . n A 1 219 TYR 219 219 219 TYR TYR A . n A 1 220 PHE 220 220 220 PHE PHE A . n A 1 221 TRP 221 221 221 TRP TRP A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 PRO 223 223 223 PRO PRO A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 VAL 225 225 225 VAL VAL A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 PRO 227 227 227 PRO PRO A . n A 1 228 CYS 228 228 228 CYS CYS A . n A 1 229 VAL 229 229 229 VAL VAL A . n A 1 230 GLY 230 230 230 GLY GLY A . n A 1 231 SER 231 231 231 SER SER A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 VAL 233 233 233 VAL VAL A . n A 1 234 PHE 234 234 234 PHE PHE A . n A 1 235 CYS 235 235 235 CYS CYS A . n A 1 236 GLN 236 236 236 GLN GLN A . n A 1 237 PHE 237 237 237 PHE PHE A . n A 1 238 TYR 238 238 238 TYR TYR A . n A 1 239 ASP 239 239 239 ASP ASP A . n A 1 240 LYS 240 240 240 LYS LYS A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 ILE 242 242 242 ILE ILE A . n A 1 243 CYS 243 243 243 CYS CYS A . n A 1 244 PRO 244 244 244 PRO PRO A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 VAL 246 246 246 VAL VAL A . n A 1 247 ASP 247 247 247 ASP ASP A . n A 1 248 LEU 248 248 248 LEU LEU A . n A 1 249 ALA 249 249 249 ALA ALA A . n A 1 250 ASN 250 250 ? ? ? A . n A 1 251 ASN 251 251 ? ? ? A . n A 1 252 GLU 252 252 ? ? ? A . n A 1 253 LYS 253 253 ? ? ? A . n A 1 254 ASP 254 254 ? ? ? A . n A 1 255 GLY 255 255 ? ? ? A . n A 1 256 VAL 256 256 ? ? ? A . n A 1 257 ASP 257 257 ? ? ? A . n A 1 258 LEU 258 258 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Center for Structures of Membrane Proteins' _pdbx_SG_project.initial_of_center CSMP # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG 1 475 475 BOG BOG A . C 3 GOL 1 661 661 GOL GOL A . D 3 GOL 1 662 662 GOL GOL A . E 3 GOL 1 663 663 GOL GOL A . F 3 GOL 1 664 664 GOL GOL A . G 3 GOL 1 665 665 GOL GOL A . H 4 HOH 1 666 1 HOH HOH A . H 4 HOH 2 667 2 HOH HOH A . H 4 HOH 3 668 3 HOH HOH A . H 4 HOH 4 669 4 HOH HOH A . H 4 HOH 5 670 5 HOH HOH A . H 4 HOH 6 671 6 HOH HOH A . H 4 HOH 7 672 7 HOH HOH A . H 4 HOH 8 673 8 HOH HOH A . H 4 HOH 9 674 9 HOH HOH A . H 4 HOH 10 675 10 HOH HOH A . H 4 HOH 11 676 11 HOH HOH A . H 4 HOH 12 677 12 HOH HOH A . H 4 HOH 13 678 13 HOH HOH A . H 4 HOH 14 679 14 HOH HOH A . H 4 HOH 15 680 15 HOH HOH A . H 4 HOH 16 681 16 HOH HOH A . H 4 HOH 17 682 17 HOH HOH A . H 4 HOH 18 683 18 HOH HOH A . H 4 HOH 19 684 19 HOH HOH A . H 4 HOH 20 685 20 HOH HOH A . H 4 HOH 21 686 21 HOH HOH A . H 4 HOH 22 687 22 HOH HOH A . H 4 HOH 23 688 23 HOH HOH A . H 4 HOH 24 689 24 HOH HOH A . H 4 HOH 25 690 25 HOH HOH A . H 4 HOH 26 691 26 HOH HOH A . H 4 HOH 27 692 27 HOH HOH A . H 4 HOH 28 693 28 HOH HOH A . H 4 HOH 29 694 29 HOH HOH A . H 4 HOH 30 695 30 HOH HOH A . H 4 HOH 31 696 31 HOH HOH A . H 4 HOH 32 697 32 HOH HOH A . H 4 HOH 33 698 33 HOH HOH A . H 4 HOH 34 699 34 HOH HOH A . H 4 HOH 35 700 35 HOH HOH A . H 4 HOH 36 701 36 HOH HOH A . H 4 HOH 37 702 37 HOH HOH A . H 4 HOH 38 703 38 HOH HOH A . H 4 HOH 39 704 39 HOH HOH A . H 4 HOH 40 705 40 HOH HOH A . H 4 HOH 41 706 41 HOH HOH A . H 4 HOH 42 707 42 HOH HOH A . H 4 HOH 43 708 43 HOH HOH A . H 4 HOH 44 709 44 HOH HOH A . H 4 HOH 45 710 45 HOH HOH A . H 4 HOH 46 711 46 HOH HOH A . H 4 HOH 47 712 47 HOH HOH A . H 4 HOH 48 713 48 HOH HOH A . H 4 HOH 49 714 49 HOH HOH A . H 4 HOH 50 715 50 HOH HOH A . H 4 HOH 51 716 51 HOH HOH A . H 4 HOH 52 717 52 HOH HOH A . H 4 HOH 53 718 53 HOH HOH A . H 4 HOH 54 719 54 HOH HOH A . H 4 HOH 55 720 55 HOH HOH A . H 4 HOH 56 721 56 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 12670 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y,x,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 y,-x,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' struct_site 6 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.mon_nstd_flag' 2 3 'Structure model' '_chem_comp.name' 3 3 'Structure model' '_chem_comp.type' 4 3 'Structure model' '_entity.pdbx_description' 5 3 'Structure model' '_pdbx_entity_nonpoly.name' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.5520 _pdbx_refine_tls.origin_y 19.1240 _pdbx_refine_tls.origin_z 22.7380 _pdbx_refine_tls.T[1][1] 0.2831 _pdbx_refine_tls.T[2][2] 0.1454 _pdbx_refine_tls.T[3][3] 0.0286 _pdbx_refine_tls.T[1][2] -0.0816 _pdbx_refine_tls.T[1][3] -0.0288 _pdbx_refine_tls.T[2][3] -0.1112 _pdbx_refine_tls.L[1][1] 1.2542 _pdbx_refine_tls.L[2][2] 1.0790 _pdbx_refine_tls.L[3][3] 1.9651 _pdbx_refine_tls.L[1][2] -0.1237 _pdbx_refine_tls.L[1][3] -0.0528 _pdbx_refine_tls.L[2][3] 0.0185 _pdbx_refine_tls.S[1][1] -0.0163 _pdbx_refine_tls.S[1][2] -0.3277 _pdbx_refine_tls.S[1][3] 0.2916 _pdbx_refine_tls.S[2][1] 0.2784 _pdbx_refine_tls.S[2][2] 0.0253 _pdbx_refine_tls.S[2][3] -0.1287 _pdbx_refine_tls.S[3][1] -0.5190 _pdbx_refine_tls.S[3][2] 0.2370 _pdbx_refine_tls.S[3][3] -0.0089 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 8 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 8 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 249 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 249 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.3.0037 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 PHASER phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 69 ? ? 58.57 19.98 2 1 ASN A 70 ? ? -167.51 117.90 3 1 ASP A 84 ? ? -59.48 99.83 4 1 PHE A 190 ? ? 30.72 62.69 5 1 LEU A 192 ? ? 52.08 12.06 6 1 ASN A 193 ? ? -162.13 102.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 9 ? CD1 ? A TYR 9 CD1 2 1 Y 1 A TYR 9 ? CD2 ? A TYR 9 CD2 3 1 Y 1 A TYR 9 ? CE1 ? A TYR 9 CE1 4 1 Y 1 A TYR 9 ? CE2 ? A TYR 9 CE2 5 1 Y 1 A TYR 9 ? CZ ? A TYR 9 CZ 6 1 Y 1 A TYR 9 ? OH ? A TYR 9 OH 7 1 Y 1 A LYS 86 ? CG ? A LYS 86 CG 8 1 Y 1 A LYS 86 ? CD ? A LYS 86 CD 9 1 Y 1 A LYS 86 ? CE ? A LYS 86 CE 10 1 Y 1 A LYS 86 ? NZ ? A LYS 86 NZ 11 1 Y 1 A LYS 210 ? CG ? A LYS 210 CG 12 1 Y 1 A LYS 210 ? CD ? A LYS 210 CD 13 1 Y 1 A LYS 210 ? CE ? A LYS 210 CE 14 1 Y 1 A LYS 210 ? NZ ? A LYS 210 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A HIS 2 ? A HIS 2 3 1 Y 1 A MET 3 ? A MET 3 4 1 Y 1 A LEU 4 ? A LEU 4 5 1 Y 1 A PHE 5 ? A PHE 5 6 1 Y 1 A TYR 6 ? A TYR 6 7 1 Y 1 A LYS 7 ? A LYS 7 8 1 Y 1 A ASN 250 ? A ASN 250 9 1 Y 1 A ASN 251 ? A ASN 251 10 1 Y 1 A GLU 252 ? A GLU 252 11 1 Y 1 A LYS 253 ? A LYS 253 12 1 Y 1 A ASP 254 ? A ASP 254 13 1 Y 1 A GLY 255 ? A GLY 255 14 1 Y 1 A VAL 256 ? A VAL 256 15 1 Y 1 A ASP 257 ? A ASP 257 16 1 Y 1 A LEU 258 ? A LEU 258 # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-octylglucoside # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'octyl beta-D-glucopyranoside' BOG 3 GLYCEROL GOL 4 water HOH #