data_3C0C # _entry.id 3C0C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3C0C RCSB RCSB046181 WWPDB D_1000046181 # _pdbx_database_status.entry_id 3C0C _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-01-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Loll, P.J.' 1 'Swain, E.' 2 # _citation.id primary _citation.title 'Crystal structure of the SH3 domain of rat endophilin A2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Loll, P.J.' 1 primary 'Swain, E.' 2 primary 'Chen, Y.' 3 primary 'Turner, B.T.' 4 primary 'Zhang, J.' 5 # _cell.length_a 64.970 _cell.length_b 64.970 _cell.length_c 41.270 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3C0C _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 3C0C _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Endophilin-A2 8299.041 1 ? ? 'SH3 domain' ? 2 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Endophilin-2, SH3 domain-containing GRB2-like protein 1, SH3 domain protein 2B, Extra eleven-nineteen leukemia fusion gene protein, EEN, EEN fusion partner of MLL ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GAMDPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEG(MSE)LHGQSGFFPLSYVQVLVPLPQ' _entity_poly.pdbx_seq_one_letter_code_can GAMDPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPLPQ _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 PRO n 1 6 GLU n 1 7 PHE n 1 8 MET n 1 9 PRO n 1 10 PRO n 1 11 LEU n 1 12 ASP n 1 13 GLN n 1 14 PRO n 1 15 SER n 1 16 CYS n 1 17 LYS n 1 18 ALA n 1 19 LEU n 1 20 TYR n 1 21 ASP n 1 22 PHE n 1 23 GLU n 1 24 PRO n 1 25 GLU n 1 26 ASN n 1 27 ASP n 1 28 GLY n 1 29 GLU n 1 30 LEU n 1 31 GLY n 1 32 PHE n 1 33 ARG n 1 34 GLU n 1 35 GLY n 1 36 ASP n 1 37 LEU n 1 38 ILE n 1 39 THR n 1 40 LEU n 1 41 THR n 1 42 ASN n 1 43 GLN n 1 44 ILE n 1 45 ASP n 1 46 GLU n 1 47 ASN n 1 48 TRP n 1 49 TYR n 1 50 GLU n 1 51 GLY n 1 52 MSE n 1 53 LEU n 1 54 HIS n 1 55 GLY n 1 56 GLN n 1 57 SER n 1 58 GLY n 1 59 PHE n 1 60 PHE n 1 61 PRO n 1 62 LEU n 1 63 SER n 1 64 TYR n 1 65 VAL n 1 66 GLN n 1 67 VAL n 1 68 LEU n 1 69 VAL n 1 70 PRO n 1 71 LEU n 1 72 PRO n 1 73 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene 'Sh3gl1, Sh3p8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name GST-parallel _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SH3G1_RAT _struct_ref.pdbx_db_accession O35964 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPLPQ _struct_ref.pdbx_align_begin 303 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3C0C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 73 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O35964 _struct_ref_seq.db_align_beg 303 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 368 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 303 _struct_ref_seq.pdbx_auth_seq_align_end 368 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3C0C GLY A 1 ? UNP O35964 ? ? 'EXPRESSION TAG' 296 1 1 3C0C ALA A 2 ? UNP O35964 ? ? 'EXPRESSION TAG' 297 2 1 3C0C MET A 3 ? UNP O35964 ? ? 'EXPRESSION TAG' 298 3 1 3C0C ASP A 4 ? UNP O35964 ? ? 'EXPRESSION TAG' 299 4 1 3C0C PRO A 5 ? UNP O35964 ? ? 'EXPRESSION TAG' 300 5 1 3C0C GLU A 6 ? UNP O35964 ? ? 'EXPRESSION TAG' 301 6 1 3C0C PHE A 7 ? UNP O35964 ? ? 'EXPRESSION TAG' 302 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3C0C _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'hanging drop vapor diffusion' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '1.9 M magnesium sulfate, 0.1 M MES, pH 6.5, hanging drop vapor diffusion, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9000 1.0 2 0.9795 1.0 3 0.9798 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_wavelength_list '0.9000, 0.9795, 0.9798' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C # _reflns.entry_id 3C0C _reflns.d_resolution_high 1.410 _reflns.d_resolution_low 34.890 _reflns.number_obs 13188 _reflns.pdbx_scaling_rejects 1668 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_netI_over_sigmaI 11.000 _reflns.pdbx_chi_squared 0.920 _reflns.pdbx_redundancy 9.040 _reflns.percent_possible_obs 75.200 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.41 1.46 ? 280 ? 0.620 0.7 ? 1.750 1.23 ? 226 13.30 1 1 1.46 1.52 ? 1239 ? 0.686 0.5 ? 1.600 1.81 ? 677 39.40 2 1 1.52 1.59 ? 3129 ? 0.717 0.6 ? 1.390 2.88 ? 1056 61.00 3 1 1.59 1.68 ? 5697 ? 0.666 1.0 ? 1.540 4.14 ? 1356 78.30 4 1 1.68 1.78 ? 9128 ? 0.602 1.5 ? 1.470 5.73 ? 1550 90.10 5 1 1.78 1.92 ? 15066 ? 0.495 2.8 ? 1.360 9.00 ? 1657 95.20 6 1 1.92 2.11 ? 21263 ? 0.306 5.2 ? 1.120 12.53 ? 1666 95.60 7 1 2.11 2.42 ? 21727 ? 0.179 7.7 ? 0.750 12.87 ? 1669 94.30 8 1 2.42 3.04 ? 21609 ? 0.095 13.0 ? 0.630 12.94 ? 1650 92.50 9 1 3.04 34.89 ? 21718 ? 0.039 32.4 ? 0.470 12.81 ? 1681 88.30 10 1 # _refine.entry_id 3C0C _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 25.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 92.500 _refine.ls_number_reflns_obs 9419 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.197 _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.217 _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 433 _refine.B_iso_mean 41.328 _refine.aniso_B[1][1] -0.910 _refine.aniso_B[2][2] -0.910 _refine.aniso_B[3][3] 1.820 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.956 _refine.pdbx_overall_ESU_R 0.106 _refine.pdbx_overall_ESU_R_Free 0.100 _refine.overall_SU_ML 0.071 _refine.overall_SU_B 4.207 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 514 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 595 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 25.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 539 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 736 1.400 1.977 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 65 6.427 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30 33.783 26.333 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 82 12.062 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 1 13.402 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 75 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 437 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 326 0.724 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 527 1.290 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 213 2.142 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 209 3.533 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.950 _refine_ls_shell.number_reflns_R_work 637 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.R_factor_R_free 0.290 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 662 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3C0C _struct.title 'X-ray Crystal Structure of the Rat Endophilin A2 SH3 Domain' _struct.pdbx_descriptor Endophilin-A2 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3C0C _struct_keywords.text 'endocytosis, SH3, voltage-gated calcium channel, Endosome, Lipid-binding, Membrane, Phosphoprotein, Proto-oncogene, SH3 domain' _struct_keywords.pdbx_keywords ENDOCYTOSIS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 51 C ? ? ? 1_555 A MSE 52 N ? ? A GLY 346 A MSE 347 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 52 C ? ? ? 1_555 A LEU 53 N ? ? A MSE 347 A LEU 348 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 56 ? PRO A 61 ? GLN A 351 PRO A 356 A 2 TRP A 48 ? LEU A 53 ? TRP A 343 LEU A 348 A 3 LEU A 37 ? GLN A 43 ? LEU A 332 GLN A 338 A 4 SER A 15 ? ALA A 18 ? SER A 310 ALA A 313 A 5 VAL A 65 ? VAL A 69 ? VAL A 360 VAL A 364 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 60 ? O PHE A 355 N TYR A 49 ? N TYR A 344 A 2 3 O MSE A 52 ? O MSE A 347 N THR A 39 ? N THR A 334 A 3 4 O ILE A 38 ? O ILE A 333 N CYS A 16 ? N CYS A 311 A 4 5 N LYS A 17 ? N LYS A 312 O GLN A 66 ? O GLN A 361 # _atom_sites.entry_id 3C0C _atom_sites.fract_transf_matrix[1][1] 0.015392 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015392 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024231 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 296 ? ? ? A . n A 1 2 ALA 2 297 ? ? ? A . n A 1 3 MET 3 298 ? ? ? A . n A 1 4 ASP 4 299 ? ? ? A . n A 1 5 PRO 5 300 ? ? ? A . n A 1 6 GLU 6 301 ? ? ? A . n A 1 7 PHE 7 302 ? ? ? A . n A 1 8 MET 8 303 ? ? ? A . n A 1 9 PRO 9 304 ? ? ? A . n A 1 10 PRO 10 305 305 PRO PRO A . n A 1 11 LEU 11 306 306 LEU LEU A . n A 1 12 ASP 12 307 307 ASP ASP A . n A 1 13 GLN 13 308 308 GLN GLN A . n A 1 14 PRO 14 309 309 PRO PRO A . n A 1 15 SER 15 310 310 SER SER A . n A 1 16 CYS 16 311 311 CYS CYS A . n A 1 17 LYS 17 312 312 LYS LYS A . n A 1 18 ALA 18 313 313 ALA ALA A . n A 1 19 LEU 19 314 314 LEU LEU A . n A 1 20 TYR 20 315 315 TYR TYR A . n A 1 21 ASP 21 316 316 ASP ASP A . n A 1 22 PHE 22 317 317 PHE PHE A . n A 1 23 GLU 23 318 318 GLU GLU A . n A 1 24 PRO 24 319 319 PRO PRO A . n A 1 25 GLU 25 320 320 GLU GLU A . n A 1 26 ASN 26 321 321 ASN ASN A . n A 1 27 ASP 27 322 322 ASP ASP A . n A 1 28 GLY 28 323 323 GLY GLY A . n A 1 29 GLU 29 324 324 GLU GLU A . n A 1 30 LEU 30 325 325 LEU LEU A . n A 1 31 GLY 31 326 326 GLY GLY A . n A 1 32 PHE 32 327 327 PHE PHE A . n A 1 33 ARG 33 328 328 ARG ARG A . n A 1 34 GLU 34 329 329 GLU GLU A . n A 1 35 GLY 35 330 330 GLY GLY A . n A 1 36 ASP 36 331 331 ASP ASP A . n A 1 37 LEU 37 332 332 LEU LEU A . n A 1 38 ILE 38 333 333 ILE ILE A . n A 1 39 THR 39 334 334 THR THR A . n A 1 40 LEU 40 335 335 LEU LEU A . n A 1 41 THR 41 336 336 THR THR A . n A 1 42 ASN 42 337 337 ASN ASN A . n A 1 43 GLN 43 338 338 GLN GLN A . n A 1 44 ILE 44 339 339 ILE ILE A . n A 1 45 ASP 45 340 340 ASP ASP A . n A 1 46 GLU 46 341 341 GLU GLU A . n A 1 47 ASN 47 342 342 ASN ASN A . n A 1 48 TRP 48 343 343 TRP TRP A . n A 1 49 TYR 49 344 344 TYR TYR A . n A 1 50 GLU 50 345 345 GLU GLU A . n A 1 51 GLY 51 346 346 GLY GLY A . n A 1 52 MSE 52 347 347 MSE MSE A . n A 1 53 LEU 53 348 348 LEU LEU A . n A 1 54 HIS 54 349 349 HIS HIS A . n A 1 55 GLY 55 350 350 GLY GLY A . n A 1 56 GLN 56 351 351 GLN GLN A . n A 1 57 SER 57 352 352 SER SER A . n A 1 58 GLY 58 353 353 GLY GLY A . n A 1 59 PHE 59 354 354 PHE PHE A . n A 1 60 PHE 60 355 355 PHE PHE A . n A 1 61 PRO 61 356 356 PRO PRO A . n A 1 62 LEU 62 357 357 LEU LEU A . n A 1 63 SER 63 358 358 SER SER A . n A 1 64 TYR 64 359 359 TYR TYR A . n A 1 65 VAL 65 360 360 VAL VAL A . n A 1 66 GLN 66 361 361 GLN GLN A . n A 1 67 VAL 67 362 362 VAL VAL A . n A 1 68 LEU 68 363 363 LEU LEU A . n A 1 69 VAL 69 364 364 VAL VAL A . n A 1 70 PRO 70 365 365 PRO PRO A . n A 1 71 LEU 71 366 366 LEU LEU A . n A 1 72 PRO 72 367 367 PRO PRO A . n A 1 73 GLN 73 368 368 GLN GLN A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 52 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 347 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 26.7210 _pdbx_refine_tls.origin_y 13.2620 _pdbx_refine_tls.origin_z 4.5910 _pdbx_refine_tls.T[1][1] -0.1788 _pdbx_refine_tls.T[2][2] -0.1795 _pdbx_refine_tls.T[3][3] -0.2064 _pdbx_refine_tls.T[1][2] 0.0132 _pdbx_refine_tls.T[1][3] -0.0006 _pdbx_refine_tls.T[2][3] -0.0022 _pdbx_refine_tls.L[1][1] 3.6482 _pdbx_refine_tls.L[2][2] 3.0647 _pdbx_refine_tls.L[3][3] 4.2674 _pdbx_refine_tls.L[1][2] -1.1872 _pdbx_refine_tls.L[1][3] 1.2769 _pdbx_refine_tls.L[2][3] -1.0870 _pdbx_refine_tls.S[1][1] 0.0220 _pdbx_refine_tls.S[2][2] -0.0077 _pdbx_refine_tls.S[3][3] -0.0143 _pdbx_refine_tls.S[1][2] 0.0152 _pdbx_refine_tls.S[1][3] 0.0920 _pdbx_refine_tls.S[2][3] -0.1264 _pdbx_refine_tls.S[2][1] 0.0414 _pdbx_refine_tls.S[3][1] -0.0487 _pdbx_refine_tls.S[3][2] 0.1627 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 305 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 10 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 368 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 73 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 8.0L 'May 8 2003' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data scaling' http://www.msc.com/protein/dtrek.html ? ? 1 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 296 ? A GLY 1 2 1 Y 1 A ALA 297 ? A ALA 2 3 1 Y 1 A MET 298 ? A MET 3 4 1 Y 1 A ASP 299 ? A ASP 4 5 1 Y 1 A PRO 300 ? A PRO 5 6 1 Y 1 A GLU 301 ? A GLU 6 7 1 Y 1 A PHE 302 ? A PHE 7 8 1 Y 1 A MET 303 ? A MET 8 9 1 Y 1 A PRO 304 ? A PRO 9 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 19 19 HOH HOH A . B 2 HOH 20 20 20 HOH HOH A . B 2 HOH 21 21 21 HOH HOH A . B 2 HOH 22 22 22 HOH HOH A . B 2 HOH 23 23 23 HOH HOH A . B 2 HOH 24 24 24 HOH HOH A . B 2 HOH 25 25 25 HOH HOH A . B 2 HOH 26 26 26 HOH HOH A . B 2 HOH 27 27 27 HOH HOH A . B 2 HOH 28 28 28 HOH HOH A . B 2 HOH 29 29 29 HOH HOH A . B 2 HOH 30 30 30 HOH HOH A . B 2 HOH 31 31 31 HOH HOH A . B 2 HOH 32 32 32 HOH HOH A . B 2 HOH 33 33 33 HOH HOH A . B 2 HOH 34 34 34 HOH HOH A . B 2 HOH 35 35 35 HOH HOH A . B 2 HOH 36 36 36 HOH HOH A . B 2 HOH 37 37 37 HOH HOH A . B 2 HOH 38 38 38 HOH HOH A . B 2 HOH 39 39 39 HOH HOH A . B 2 HOH 40 40 40 HOH HOH A . B 2 HOH 41 41 41 HOH HOH A . B 2 HOH 42 42 42 HOH HOH A . B 2 HOH 43 43 43 HOH HOH A . B 2 HOH 44 44 44 HOH HOH A . B 2 HOH 45 45 45 HOH HOH A . B 2 HOH 46 46 46 HOH HOH A . B 2 HOH 47 47 47 HOH HOH A . B 2 HOH 48 48 48 HOH HOH A . B 2 HOH 49 49 49 HOH HOH A . B 2 HOH 50 50 50 HOH HOH A . B 2 HOH 51 51 51 HOH HOH A . B 2 HOH 52 52 52 HOH HOH A . B 2 HOH 53 53 53 HOH HOH A . B 2 HOH 54 54 54 HOH HOH A . B 2 HOH 55 55 55 HOH HOH A . B 2 HOH 56 56 56 HOH HOH A . B 2 HOH 57 57 57 HOH HOH A . B 2 HOH 58 58 58 HOH HOH A . B 2 HOH 59 59 59 HOH HOH A . B 2 HOH 60 60 60 HOH HOH A . B 2 HOH 61 61 61 HOH HOH A . B 2 HOH 62 62 62 HOH HOH A . B 2 HOH 63 63 63 HOH HOH A . B 2 HOH 64 64 64 HOH HOH A . B 2 HOH 65 65 65 HOH HOH A . B 2 HOH 66 66 66 HOH HOH A . B 2 HOH 67 67 67 HOH HOH A . B 2 HOH 68 68 68 HOH HOH A . B 2 HOH 69 69 69 HOH HOH A . B 2 HOH 70 70 70 HOH HOH A . B 2 HOH 71 71 71 HOH HOH A . B 2 HOH 72 72 72 HOH HOH A . B 2 HOH 73 73 73 HOH HOH A . B 2 HOH 74 74 74 HOH HOH A . B 2 HOH 75 75 75 HOH HOH A . B 2 HOH 76 76 76 HOH HOH A . B 2 HOH 77 77 77 HOH HOH A . B 2 HOH 78 78 78 HOH HOH A . B 2 HOH 79 79 79 HOH HOH A . B 2 HOH 80 80 80 HOH HOH A . B 2 HOH 81 81 81 HOH HOH A . #