HEADER HYDROLASE 21-JAN-08 3C0Q TITLE UVDE E175A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV ENDONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS UVDE, TIM BARREL, ENDONUCLEASE, DNA REPAIR, PLASMID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.MEULENBROEK,K.PASPALEVA,E.A.J.THOMASSEN,J.P.ABRAHAMS,N.GOOSEN, AUTHOR 2 N.S.PANNU REVDAT 5 15-NOV-23 3C0Q 1 REMARK REVDAT 4 01-NOV-23 3C0Q 1 REMARK REVDAT 3 10-NOV-21 3C0Q 1 REMARK SEQADV LINK REVDAT 2 10-MAR-09 3C0Q 1 JRNL REVDAT 1 09-DEC-08 3C0Q 0 JRNL AUTH E.M.MEULENBROEK,K.PASPALEVA,E.A.THOMASSEN,J.P.ABRAHAMS, JRNL AUTH 2 N.GOOSEN,N.S.PANNU JRNL TITL INVOLVEMENT OF A CARBOXYLATED LYSINE IN UV DAMAGE JRNL TITL 2 ENDONUCLEASE JRNL REF PROTEIN SCI. V. 18 549 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19241382 JRNL DOI 10.1002/PRO.54 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 8773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 636 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.349 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.251 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.636 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2294 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3115 ; 1.318 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.250 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;34.242 ;22.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;18.631 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.894 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1790 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 995 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1530 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 77 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1431 ; 0.406 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2227 ; 0.708 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 965 ; 0.973 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 888 ; 1.668 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9213 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 35.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3BZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M AMMONIUM SULFATE, 0.1M ACETATE, REMARK 280 PH6.0, 1M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.69333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.38667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.54000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.23333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.84667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.69333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 59.38667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.23333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.54000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 14.84667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -56.69000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -98.18996 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -14.84667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O1 SO4 A 281 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 278 REMARK 465 THR A 279 REMARK 465 PRO A 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 -52.42 77.42 REMARK 500 HIS A 25 -29.79 153.44 REMARK 500 ALA A 147 32.87 -84.47 REMARK 500 TYR A 148 101.22 -15.43 REMARK 500 ARG A 179 -75.24 -110.94 REMARK 500 LYS A 273 -122.26 55.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 24 HIS A 25 -49.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 283 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BZG RELATED DB: PDB REMARK 900 UVDE PH4.4 REMARK 900 RELATED ID: 3BZJ RELATED DB: PDB REMARK 900 UVDE K229L REMARK 900 RELATED ID: 3C0L RELATED DB: PDB REMARK 900 UVDE K229R REMARK 900 RELATED ID: 3C0S RELATED DB: PDB REMARK 900 UVDE 3 METALS DBREF 3C0Q A 1 280 UNP Q746K1 Q746K1_THET2 1 280 SEQADV 3C0Q MET A -20 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q GLY A -19 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -18 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -17 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -16 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -15 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -14 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -13 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -12 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -11 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -10 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -9 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q SER A -8 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q SER A -7 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q GLY A -6 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A -5 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q ILE A -4 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q GLU A -3 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q GLY A -2 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q ARG A -1 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q HIS A 0 UNP Q746K1 EXPRESSION TAG SEQADV 3C0Q ALA A 175 UNP Q746K1 GLU 175 ENGINEERED MUTATION SEQRES 1 A 301 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 301 SER GLY HIS ILE GLU GLY ARG HIS MET ILE ARG LEU GLY SEQRES 3 A 301 TYR PRO CYS GLU ASN LEU THR LEU GLY ALA THR THR ASN SEQRES 4 A 301 ARG THR LEU ARG LEU ALA HIS LEU THR GLU GLU ARG VAL SEQRES 5 A 301 ARG GLU LYS ALA ALA GLU ASN LEU ARG ASP LEU GLU ARG SEQRES 6 A 301 ILE LEU ARG PHE ASN ALA ASP HIS GLY PHE ALA LEU PHE SEQRES 7 A 301 ARG ILE GLY GLN HIS LEU ILE PRO PHE ALA SER HIS PRO SEQRES 8 A 301 LEU PHE PRO TYR ASP TRP GLU GLY ALA TYR GLU GLU GLU SEQRES 9 A 301 LEU ALA ARG LEU GLY ALA LEU ALA ARG ALA PHE GLY GLN SEQRES 10 A 301 ARG LEU SER MET HIS PRO GLY GLN TYR VAL ASN PRO GLY SEQRES 11 A 301 SER PRO ASP PRO GLU VAL VAL GLU ARG SER LEU ALA GLU SEQRES 12 A 301 LEU ARG TYR SER ALA ARG LEU LEU SER LEU LEU GLY ALA SEQRES 13 A 301 GLU ASP GLY VAL LEU VAL LEU HIS LEU GLY GLY ALA TYR SEQRES 14 A 301 GLY GLU LYS GLY LYS ALA LEU ARG ARG PHE VAL GLU ASN SEQRES 15 A 301 LEU ARG GLY GLU GLU GLU VAL LEU ARG TYR LEU ALA LEU SEQRES 16 A 301 ALA ASN ASP GLU ARG LEU TRP ASN VAL GLU GLU VAL LEU SEQRES 17 A 301 LYS ALA ALA GLU ALA LEU GLY VAL PRO VAL VAL VAL ASP SEQRES 18 A 301 THR LEU HIS HIS ALA LEU ASN PRO GLY ARG LEU PRO LEU SEQRES 19 A 301 GLU GLU ALA LEU ARG LEU ALA PHE PRO THR TRP ARG GLY SEQRES 20 A 301 ARG PRO KCX VAL HIS LEU ALA SER GLN ASP PRO LYS LYS SEQRES 21 A 301 ARG PRO GLY ALA HIS ALA PHE ARG VAL THR ARG GLU ASP SEQRES 22 A 301 TRP GLU ARG LEU LEU SER ALA LEU PRO GLY PRO ALA ASP SEQRES 23 A 301 VAL MET VAL GLU ALA LYS GLY LYS GLU GLN GLY LEU ALA SEQRES 24 A 301 THR PRO MODRES 3C0Q KCX A 229 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 229 12 HET SO4 A 281 5 HET SO4 A 282 5 HET MN A 283 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 MN MN 2+ FORMUL 5 HOH *27(H2 O) HELIX 1 1 ARG A 22 LEU A 26 5 5 HELIX 2 2 THR A 27 ASP A 51 1 25 HELIX 3 3 ASP A 75 PHE A 94 1 20 HELIX 4 4 ASP A 112 LEU A 133 1 22 HELIX 5 5 GLY A 152 GLY A 164 1 13 HELIX 6 6 GLU A 165 ARG A 170 1 6 HELIX 7 7 ASN A 182 GLY A 194 1 13 HELIX 8 8 THR A 201 ASN A 207 1 7 HELIX 9 9 PRO A 212 PHE A 221 1 10 HELIX 10 10 PRO A 222 TRP A 224 5 3 HELIX 11 11 THR A 249 LEU A 260 1 12 HELIX 12 12 GLY A 272 GLY A 276 5 5 SHEET 1 A 9 ILE A 2 PRO A 7 0 SHEET 2 A 9 LEU A 56 ARG A 58 1 N LEU A 56 O LEU A 4 SHEET 3 A 9 ARG A 97 MET A 100 1 O ARG A 97 N PHE A 57 SHEET 4 A 9 VAL A 139 HIS A 143 1 O VAL A 141 N MET A 100 SHEET 5 A 9 LEU A 172 ALA A 175 1 O ALA A 173 N LEU A 140 SHEET 6 A 9 VAL A 197 ASP A 200 1 O VAL A 198 N LEU A 174 SHEET 7 A 9 KCX A 229 LEU A 232 1 O HIS A 231 N VAL A 199 SHEET 8 A 9 ALA A 264 VAL A 268 1 O MET A 267 N VAL A 230 SHEET 9 A 9 ILE A 2 PRO A 7 1 N ARG A 3 O VAL A 266 SHEET 1 B 2 GLU A 9 ASN A 10 0 SHEET 2 B 2 ALA A 15 THR A 16 -1 O ALA A 15 N ASN A 10 LINK C PRO A 228 N KCX A 229 1555 1555 1.33 LINK C KCX A 229 N VAL A 230 1555 1555 1.33 SITE 1 AC1 3 LEU A 23 HIS A 69 ARG A 118 SITE 1 AC2 3 LEU A 21 ARG A 22 HIS A 25 SITE 1 AC3 3 HIS A 203 GLY A 242 HIS A 244 CRYST1 113.380 113.380 89.080 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008820 0.005092 0.000000 0.00000 SCALE2 0.000000 0.010184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011226 0.00000