HEADER DNA BINDING PROTEIN 24-JAN-08 3C23 TITLE STRUCTURE OF A BACTERIAL DNA DAMAGE SENSOR PROTEIN WITH NON-REACTIVE TITLE 2 LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA INTEGRITY SCANNING PROTEIN DISA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS DNA DAMAGE, DNA REPAIR, DNA-BINDING, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.WITTE,S.HARTUNG,K.BUTTNER,K.P.HOPFNER REVDAT 5 01-NOV-23 3C23 1 REMARK SEQADV REVDAT 4 25-OCT-17 3C23 1 REMARK REVDAT 3 19-JAN-10 3C23 1 REMARK REVDAT 2 24-FEB-09 3C23 1 VERSN REVDAT 1 06-MAY-08 3C23 0 JRNL AUTH G.WITTE,S.HARTUNG,K.BUTTNER,K.P.HOPFNER JRNL TITL STRUCTURAL BIOCHEMISTRY OF A BACTERIAL CHECKPOINT PROTEIN JRNL TITL 2 REVEALS DIADENYLATE CYCLASE ACTIVITY REGULATED BY DNA JRNL TITL 3 RECOMBINATION INTERMEDIATES JRNL REF MOL.CELL V. 30 167 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18439896 JRNL DOI 10.1016/J.MOLCEL.2008.02.020 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 31874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RANDOM REMARK 3 FREE R VALUE TEST SET SELECTION : THROUGHOUT REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3192 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.42400 REMARK 3 B22 (A**2) : -4.12000 REMARK 3 B33 (A**2) : -7.30400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.380 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.299 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.182 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.105 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.239 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 38.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : 3AT.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : 3AT.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.871 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.650 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : 0.14900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : 0.38400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3C1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.75, 0.17M REMARK 280 AMMONIUMACETATE, 35% MPD, 1.6MM CORDYCEPIN(3'-DEOXY-ATP), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.04500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.58500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.28500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.04500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.58500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.28500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.04500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.58500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.28500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.04500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.58500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.28500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -88.09000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -88.09000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 166.57000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 166.57000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 SER A 356 REMARK 465 GLU A 357 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 VAL B 3 REMARK 465 LYS B 4 REMARK 465 SER B 5 REMARK 465 LEU B 6 REMARK 465 SER B 356 REMARK 465 GLU B 357 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 272 CD NE CZ NH1 NH2 REMARK 480 ALA A 281 CB REMARK 480 ARG A 302 NE CZ NH1 NH2 REMARK 480 GLU A 327 CD OE1 OE2 REMARK 480 LYS A 331 CD CE NZ REMARK 480 GLU A 337 CD OE1 OE2 REMARK 480 HIS A 352 ND1 CD2 CE1 NE2 REMARK 480 ARG B 262 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 272 CD NE CZ NH1 NH2 REMARK 480 ALA B 281 CB REMARK 480 ARG B 302 NE CZ NH1 NH2 REMARK 480 GLU B 327 CD OE1 OE2 REMARK 480 LYS B 331 CD CE NZ REMARK 480 GLU B 337 CD OE1 OE2 REMARK 480 HIS B 352 ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 64 138.17 -172.79 REMARK 500 TYR A 137 -86.70 -112.32 REMARK 500 LYS A 138 -102.24 -99.74 REMARK 500 GLU A 229 -76.87 -16.17 REMARK 500 GLU A 246 132.67 -38.17 REMARK 500 THR A 261 -73.98 -99.64 REMARK 500 ARG A 262 -112.56 -59.72 REMARK 500 ARG A 263 155.75 -40.24 REMARK 500 PRO A 265 36.68 -64.04 REMARK 500 ASP A 277 99.22 -53.26 REMARK 500 GLN A 280 117.65 -160.60 REMARK 500 ASP A 285 -9.60 -54.24 REMARK 500 LYS A 316 -51.82 65.78 REMARK 500 ASP B 75 -158.38 -86.15 REMARK 500 TYR B 137 -89.81 -110.16 REMARK 500 LYS B 138 -103.19 -94.81 REMARK 500 GLU B 215 -37.54 -33.83 REMARK 500 GLU B 229 -75.90 -24.69 REMARK 500 GLU B 246 133.41 -33.54 REMARK 500 THR B 261 -78.76 -125.50 REMARK 500 ARG B 262 -95.51 -59.59 REMARK 500 PRO B 265 51.26 -63.43 REMARK 500 LYS B 316 -45.93 73.13 REMARK 500 ALA B 342 -79.26 -44.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 89 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3AT A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3AT B 612 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C1Y RELATED DB: PDB REMARK 900 STRUCTURE OF A BACTERIAL DNA DAMAGE SENSOR PROTEIN WITH CO-PURIFIED REMARK 900 AND CO-CRYSTALLIZED LIGAND REMARK 900 RELATED ID: 3C1Z RELATED DB: PDB REMARK 900 STRUCTURE OF A BACTERIAL DNA DAMAGE SENSOR PROTEIN, APO-FORM REMARK 900 RELATED ID: 3C21 RELATED DB: PDB REMARK 900 STRUCTURE OF A BACTERIAL DNA DAMAGE SENSOR PROTEIN WITH REACTION REMARK 900 PRODUCT DBREF 3C23 A 1 357 UNP Q9WY43 DISA_THEMA 1 357 DBREF 3C23 B 1 357 UNP Q9WY43 DISA_THEMA 1 357 SEQADV 3C23 MET A -19 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 GLY A -18 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER A -17 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER A -16 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS A -15 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS A -14 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS A -13 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS A -12 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS A -11 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS A -10 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER A -9 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER A -8 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 GLY A -7 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 LEU A -6 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 VAL A -5 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 PRO A -4 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 ARG A -3 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 GLY A -2 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER A -1 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS A 0 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 MET B -19 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 GLY B -18 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER B -17 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER B -16 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS B -15 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS B -14 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS B -13 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS B -12 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS B -11 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS B -10 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER B -9 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER B -8 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 GLY B -7 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 LEU B -6 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 VAL B -5 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 PRO B -4 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 ARG B -3 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 GLY B -2 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 SER B -1 UNP Q9WY43 EXPRESSION TAG SEQADV 3C23 HIS B 0 UNP Q9WY43 EXPRESSION TAG SEQRES 1 A 377 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 377 LEU VAL PRO ARG GLY SER HIS MET GLY VAL LYS SER LEU SEQRES 3 A 377 VAL PRO GLN GLU LEU ILE GLU LYS ILE LYS LEU ILE SER SEQRES 4 A 377 PRO GLY THR GLU LEU ARG LYS ALA LEU ASP ASP ILE ILE SEQRES 5 A 377 ASN ALA ASN PHE GLY ALA LEU ILE PHE LEU VAL ASP ASP SEQRES 6 A 377 PRO LYS LYS TYR GLU ASP VAL ILE GLN GLY GLY PHE TRP SEQRES 7 A 377 LEU ASP THR ASP PHE SER ALA GLU LYS LEU TYR GLU LEU SEQRES 8 A 377 SER LYS MET ASP GLY ALA ILE VAL LEU SER GLU ASP ILE SEQRES 9 A 377 THR LYS ILE TYR TYR ALA ASN VAL HIS LEU VAL PRO ASP SEQRES 10 A 377 PRO THR ILE PRO THR GLY GLU THR GLY THR ARG HIS ARG SEQRES 11 A 377 THR ALA GLU ARG LEU ALA LYS GLN THR GLY LYS VAL VAL SEQRES 12 A 377 ILE ALA VAL SER ARG ARG ARG ASN ILE ILE SER LEU TYR SEQRES 13 A 377 TYR LYS ASN TYR LYS TYR VAL VAL ASN GLN VAL ASP PHE SEQRES 14 A 377 LEU ILE SER LYS VAL THR GLN ALA ILE SER THR LEU GLU SEQRES 15 A 377 LYS TYR LYS ASP ASN PHE ASN LYS LEU LEU SER GLU LEU SEQRES 16 A 377 GLU VAL LEU GLU LEU GLU ASN ARG VAL THR LEU ALA ASP SEQRES 17 A 377 VAL VAL ARG THR LEU ALA LYS GLY PHE GLU LEU LEU ARG SEQRES 18 A 377 ILE VAL GLU GLU ILE ARG PRO TYR ILE VAL GLU LEU GLY SEQRES 19 A 377 GLU GLU GLY ARG LEU ALA ARG MET GLN LEU ARG GLU LEU SEQRES 20 A 377 THR GLU ASP VAL ASP ASP LEU LEU VAL LEU LEU ILE MET SEQRES 21 A 377 ASP TYR SER SER GLU GLU VAL GLU GLU GLU THR ALA GLN SEQRES 22 A 377 ASN ILE LEU GLN ASP PHE ILE THR ARG ARG GLU PRO SER SEQRES 23 A 377 PRO ILE SER ILE SER ARG VAL LEU GLY TYR ASP VAL GLN SEQRES 24 A 377 GLN ALA ALA GLN LEU ASP ASP VAL LEU VAL SER ALA ARG SEQRES 25 A 377 GLY TYR ARG LEU LEU LYS THR VAL ALA ARG ILE PRO LEU SEQRES 26 A 377 SER ILE GLY TYR ASN VAL VAL ARG MET PHE LYS THR LEU SEQRES 27 A 377 ASP GLN ILE SER LYS ALA SER VAL GLU ASP LEU LYS LYS SEQRES 28 A 377 VAL GLU GLY ILE GLY GLU LYS ARG ALA ARG ALA ILE SER SEQRES 29 A 377 GLU SER ILE SER SER LEU LYS HIS ARG LYS THR SER GLU SEQRES 1 B 377 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 377 LEU VAL PRO ARG GLY SER HIS MET GLY VAL LYS SER LEU SEQRES 3 B 377 VAL PRO GLN GLU LEU ILE GLU LYS ILE LYS LEU ILE SER SEQRES 4 B 377 PRO GLY THR GLU LEU ARG LYS ALA LEU ASP ASP ILE ILE SEQRES 5 B 377 ASN ALA ASN PHE GLY ALA LEU ILE PHE LEU VAL ASP ASP SEQRES 6 B 377 PRO LYS LYS TYR GLU ASP VAL ILE GLN GLY GLY PHE TRP SEQRES 7 B 377 LEU ASP THR ASP PHE SER ALA GLU LYS LEU TYR GLU LEU SEQRES 8 B 377 SER LYS MET ASP GLY ALA ILE VAL LEU SER GLU ASP ILE SEQRES 9 B 377 THR LYS ILE TYR TYR ALA ASN VAL HIS LEU VAL PRO ASP SEQRES 10 B 377 PRO THR ILE PRO THR GLY GLU THR GLY THR ARG HIS ARG SEQRES 11 B 377 THR ALA GLU ARG LEU ALA LYS GLN THR GLY LYS VAL VAL SEQRES 12 B 377 ILE ALA VAL SER ARG ARG ARG ASN ILE ILE SER LEU TYR SEQRES 13 B 377 TYR LYS ASN TYR LYS TYR VAL VAL ASN GLN VAL ASP PHE SEQRES 14 B 377 LEU ILE SER LYS VAL THR GLN ALA ILE SER THR LEU GLU SEQRES 15 B 377 LYS TYR LYS ASP ASN PHE ASN LYS LEU LEU SER GLU LEU SEQRES 16 B 377 GLU VAL LEU GLU LEU GLU ASN ARG VAL THR LEU ALA ASP SEQRES 17 B 377 VAL VAL ARG THR LEU ALA LYS GLY PHE GLU LEU LEU ARG SEQRES 18 B 377 ILE VAL GLU GLU ILE ARG PRO TYR ILE VAL GLU LEU GLY SEQRES 19 B 377 GLU GLU GLY ARG LEU ALA ARG MET GLN LEU ARG GLU LEU SEQRES 20 B 377 THR GLU ASP VAL ASP ASP LEU LEU VAL LEU LEU ILE MET SEQRES 21 B 377 ASP TYR SER SER GLU GLU VAL GLU GLU GLU THR ALA GLN SEQRES 22 B 377 ASN ILE LEU GLN ASP PHE ILE THR ARG ARG GLU PRO SER SEQRES 23 B 377 PRO ILE SER ILE SER ARG VAL LEU GLY TYR ASP VAL GLN SEQRES 24 B 377 GLN ALA ALA GLN LEU ASP ASP VAL LEU VAL SER ALA ARG SEQRES 25 B 377 GLY TYR ARG LEU LEU LYS THR VAL ALA ARG ILE PRO LEU SEQRES 26 B 377 SER ILE GLY TYR ASN VAL VAL ARG MET PHE LYS THR LEU SEQRES 27 B 377 ASP GLN ILE SER LYS ALA SER VAL GLU ASP LEU LYS LYS SEQRES 28 B 377 VAL GLU GLY ILE GLY GLU LYS ARG ALA ARG ALA ILE SER SEQRES 29 B 377 GLU SER ILE SER SER LEU LYS HIS ARG LYS THR SER GLU HET 3AT A 611 30 HET 3AT B 612 30 HETNAM 3AT 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE HETSYN 3AT CORDYCEPIN TRIPHOSPHATE FORMUL 3 3AT 2(C10 H16 N5 O12 P3) FORMUL 5 HOH *183(H2 O) HELIX 1 1 PRO A 8 LYS A 16 1 9 HELIX 2 2 LEU A 17 SER A 19 5 3 HELIX 3 3 THR A 22 ALA A 34 1 13 HELIX 4 4 ASP A 45 GLU A 50 5 6 HELIX 5 5 SER A 64 SER A 72 1 9 HELIX 6 6 GLY A 106 GLY A 120 1 15 HELIX 7 7 GLN A 146 ASN A 182 1 37 HELIX 8 8 THR A 185 GLU A 212 1 28 HELIX 9 9 LEU A 213 GLU A 216 5 4 HELIX 10 10 GLY A 217 GLU A 229 1 13 HELIX 11 11 ASP A 230 SER A 243 1 14 HELIX 12 12 GLU A 248 THR A 261 1 14 HELIX 13 13 SER A 266 LEU A 274 1 9 HELIX 14 14 GLN A 280 VAL A 287 5 8 HELIX 15 15 GLY A 293 VAL A 300 1 8 HELIX 16 16 PRO A 304 LYS A 316 1 13 HELIX 17 17 THR A 317 SER A 322 1 6 HELIX 18 18 SER A 325 VAL A 332 1 8 HELIX 19 19 GLY A 336 THR A 355 1 20 HELIX 20 20 PRO B 8 LYS B 16 1 9 HELIX 21 21 LEU B 17 SER B 19 5 3 HELIX 22 22 THR B 22 ALA B 34 1 13 HELIX 23 23 ASP B 45 GLU B 50 5 6 HELIX 24 24 SER B 64 SER B 72 1 9 HELIX 25 25 GLY B 106 GLY B 120 1 15 HELIX 26 26 GLN B 146 ASN B 182 1 37 HELIX 27 27 THR B 185 LEU B 213 1 29 HELIX 28 28 GLY B 214 GLU B 216 5 3 HELIX 29 29 GLY B 217 GLU B 229 1 13 HELIX 30 30 ASP B 230 SER B 243 1 14 HELIX 31 31 GLU B 248 THR B 261 1 14 HELIX 32 32 SER B 266 LEU B 274 1 9 HELIX 33 33 ALA B 282 VAL B 287 5 6 HELIX 34 34 GLY B 293 VAL B 300 1 8 HELIX 35 35 PRO B 304 LYS B 316 1 13 HELIX 36 36 THR B 317 SER B 322 1 6 HELIX 37 37 SER B 325 LYS B 330 1 6 HELIX 38 38 GLY B 336 HIS B 352 1 17 SHEET 1 A 3 ILE A 53 GLN A 54 0 SHEET 2 A 3 LYS A 86 LEU A 94 -1 O HIS A 93 N GLN A 54 SHEET 3 A 3 PHE A 57 ASP A 62 -1 N PHE A 57 O ALA A 90 SHEET 1 B 7 ILE A 53 GLN A 54 0 SHEET 2 B 7 LYS A 86 LEU A 94 -1 O HIS A 93 N GLN A 54 SHEET 3 B 7 ALA A 77 SER A 81 -1 N ALA A 77 O VAL A 92 SHEET 4 B 7 ALA A 38 VAL A 43 1 N PHE A 41 O LEU A 80 SHEET 5 B 7 VAL A 122 VAL A 126 -1 O ILE A 124 N ILE A 40 SHEET 6 B 7 ILE A 133 TYR A 136 -1 O SER A 134 N ALA A 125 SHEET 7 B 7 LYS A 141 VAL A 144 -1 O TYR A 142 N LEU A 135 SHEET 1 C 3 ILE B 53 GLN B 54 0 SHEET 2 C 3 LYS B 86 LEU B 94 -1 O HIS B 93 N GLN B 54 SHEET 3 C 3 PHE B 57 ASP B 62 -1 N PHE B 57 O ALA B 90 SHEET 1 D 7 ILE B 53 GLN B 54 0 SHEET 2 D 7 LYS B 86 LEU B 94 -1 O HIS B 93 N GLN B 54 SHEET 3 D 7 ALA B 77 SER B 81 -1 N ALA B 77 O VAL B 92 SHEET 4 D 7 ALA B 38 VAL B 43 1 N VAL B 43 O LEU B 80 SHEET 5 D 7 VAL B 122 VAL B 126 -1 O ILE B 124 N ILE B 40 SHEET 6 D 7 ILE B 133 TYR B 136 -1 O SER B 134 N ALA B 125 SHEET 7 D 7 LYS B 141 VAL B 143 -1 O TYR B 142 N LEU B 135 SITE 1 AC1 12 GLY A 76 ALA A 77 HIS A 93 LEU A 94 SITE 2 AC1 12 THR A 107 ARG A 108 HIS A 109 THR A 111 SITE 3 AC1 12 SER A 127 ARG A 128 ARG A 130 TYR B 69 SITE 1 AC2 15 TYR A 69 LYS A 73 ASP B 75 GLY B 76 SITE 2 AC2 15 ALA B 77 HIS B 93 LEU B 94 THR B 107 SITE 3 AC2 15 ARG B 108 HIS B 109 THR B 111 SER B 127 SITE 4 AC2 15 ARG B 128 ARG B 129 ARG B 130 CRYST1 88.090 125.170 166.570 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006003 0.00000