HEADER ELECTRON TRANSPORT PROTEIN (CYTOCHROME) 03-NOV-83 3C2C TITLE REFINEMENT OF THE CRYSTAL STRUCTURE OF OXIDIZED RHODOSPIRILLUM RUBRUM TITLE 2 CYTOCHROME C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 3 ORGANISM_TAXID: 1085 KEYWDS ELECTRON TRANSPORT PROTEIN (CYTOCHROME) EXPDTA X-RAY DIFFRACTION AUTHOR G.BHATIA,B.C.FINZEL,J.KRAUT REVDAT 4 21-FEB-24 3C2C 1 REMARK SEQADV LINK REVDAT 3 29-NOV-17 3C2C 1 HELIX REVDAT 2 24-FEB-09 3C2C 1 VERSN REVDAT 1 02-FEB-84 3C2C 0 JRNL AUTH G.E.BHATIA JRNL TITL REFINEMENT OF THE CRYSTAL STRUCTURE OF OXIDIZED JRNL TITL 2 RHODOSPIRILLUM RUBRUM CYTOCHROME C2 JRNL REF THESIS 1981 JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.R.SALEMME,S.T.FREER,N.H.XUONG,R.A.ALDEN,J.KRAUT REMARK 1 TITL THE STRUCTURE OF OXIDIZED CYTOCHROME C2 OF RHODOSPIRILLUM REMARK 1 TITL 2 RUBRUM REMARK 1 REF J.BIOL.CHEM. V. 248 3910 1973 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 832 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.11000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 18.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 1 CG CD OE1 OE2 REMARK 470 LYS A 12 CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 GLU A 80 OE1 OE2 REMARK 470 LYS A 86 CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 THR A 92 OG1 CG2 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB LYS A 88 O HOH A 185 1.79 REMARK 500 O HOH A 183 O HOH A 194 1.99 REMARK 500 O HOH A 146 O HOH A 173 2.05 REMARK 500 CB THR A 92 O HOH A 156 2.05 REMARK 500 O HOH A 181 O HOH A 182 2.06 REMARK 500 ND1 HIS A 42 O2A HEM A 113 2.16 REMARK 500 SG CYS A 14 CAB HEM A 113 2.17 REMARK 500 O HOH A 175 O HOH A 182 2.18 REMARK 500 O LYS A 72 O HOH A 152 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 90 O HOH A 134 4556 1.28 REMARK 500 CE LYS A 90 O HOH A 134 4556 1.31 REMARK 500 CB LYS A 112 O HOH A 181 4456 1.32 REMARK 500 OE2 GLU A 64 O HOH A 200 3745 1.41 REMARK 500 CB THR A 63 O HOH A 203 3745 1.47 REMARK 500 CB LYS A 112 O HOH A 182 4456 1.52 REMARK 500 CB GLU A 64 O HOH A 200 3745 1.93 REMARK 500 CD GLU A 64 O HOH A 200 3745 2.16 REMARK 500 CB ASP A 21 O HOH A 183 4456 2.17 REMARK 500 CB ASP A 21 O HOH A 194 4456 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 1 N GLU A 1 CA 0.123 REMARK 500 GLU A 1 CA GLU A 1 CB 0.179 REMARK 500 GLU A 1 C GLU A 1 O 0.152 REMARK 500 GLU A 8 CG GLU A 8 CD 0.113 REMARK 500 LYS A 9 CD LYS A 9 CE 0.164 REMARK 500 HIS A 18 CG HIS A 18 CD2 0.094 REMARK 500 THR A 19 CB THR A 19 OG1 0.121 REMARK 500 PHE A 20 N PHE A 20 CA -0.170 REMARK 500 ASP A 21 CG ASP A 21 OD1 0.280 REMARK 500 GLY A 34 CA GLY A 34 C 0.127 REMARK 500 GLU A 37 CD GLU A 37 OE1 0.131 REMARK 500 TYR A 46 CE1 TYR A 46 CZ 0.093 REMARK 500 GLU A 50 CD GLU A 50 OE1 0.096 REMARK 500 TYR A 52 CB TYR A 52 CG 0.094 REMARK 500 THR A 63 CA THR A 63 CB 0.222 REMARK 500 THR A 63 CB THR A 63 OG1 0.201 REMARK 500 LEU A 67 N LEU A 67 CA 0.142 REMARK 500 LYS A 81 CE LYS A 81 NZ 0.169 REMARK 500 LYS A 90 CE LYS A 90 NZ 0.155 REMARK 500 THR A 92 C THR A 92 O 0.225 REMARK 500 PHE A 93 CZ PHE A 93 CE2 0.134 REMARK 500 LYS A 94 CA LYS A 94 CB 0.135 REMARK 500 LYS A 97 CE LYS A 97 NZ 0.165 REMARK 500 ASP A 98 CB ASP A 98 CG 0.150 REMARK 500 ILE A 105 CA ILE A 105 CB 0.159 REMARK 500 LYS A 112 C LYS A 112 O 0.227 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 1 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 GLU A 1 O - C - N ANGL. DEV. = 18.4 DEGREES REMARK 500 GLY A 2 C - N - CA ANGL. DEV. = -22.7 DEGREES REMARK 500 ASP A 3 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP A 3 CB - CG - OD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 GLU A 8 CA - CB - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 LYS A 9 CD - CE - NZ ANGL. DEV. = -20.8 DEGREES REMARK 500 LYS A 12 CB - CG - CD ANGL. DEV. = 28.0 DEGREES REMARK 500 LEU A 15 CB - CG - CD2 ANGL. DEV. = 12.4 DEGREES REMARK 500 HIS A 18 CE1 - NE2 - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 HIS A 18 CG - CD2 - NE2 ANGL. DEV. = -13.6 DEGREES REMARK 500 THR A 19 CA - C - N ANGL. DEV. = 15.1 DEGREES REMARK 500 THR A 19 O - C - N ANGL. DEV. = -12.9 DEGREES REMARK 500 PHE A 20 C - N - CA ANGL. DEV. = 21.3 DEGREES REMARK 500 PHE A 20 CZ - CE2 - CD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 GLN A 22 CA - C - N ANGL. DEV. = 12.8 DEGREES REMARK 500 GLN A 22 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 ALA A 25 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 LYS A 27 CB - CG - CD ANGL. DEV. = -20.6 DEGREES REMARK 500 VAL A 28 CA - CB - CG1 ANGL. DEV. = 10.0 DEGREES REMARK 500 PHE A 36 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 PHE A 36 CZ - CE2 - CD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 GLU A 37 OE1 - CD - OE2 ANGL. DEV. = 18.1 DEGREES REMARK 500 ASN A 38 OD1 - CG - ND2 ANGL. DEV. = -14.1 DEGREES REMARK 500 ASN A 38 CB - CG - OD1 ANGL. DEV. = 18.3 DEGREES REMARK 500 ASP A 44 CB - CG - OD1 ANGL. DEV. = 25.2 DEGREES REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = -15.3 DEGREES REMARK 500 TYR A 46 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 TYR A 46 CZ - CE2 - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 TYR A 48 CB - CG - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 TYR A 48 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR A 48 CG - CD1 - CE1 ANGL. DEV. = -7.6 DEGREES REMARK 500 GLU A 50 OE1 - CD - OE2 ANGL. DEV. = 17.4 DEGREES REMARK 500 THR A 53 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 GLU A 54 OE1 - CD - OE2 ANGL. DEV. = -8.9 DEGREES REMARK 500 GLU A 54 CA - C - O ANGL. DEV. = -17.3 DEGREES REMARK 500 GLU A 54 CA - C - N ANGL. DEV. = 17.5 DEGREES REMARK 500 MET A 55 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 ALA A 57 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 GLY A 59 CA - C - O ANGL. DEV. = -11.1 DEGREES REMARK 500 THR A 61 CA - CB - CG2 ANGL. DEV. = 9.1 DEGREES REMARK 500 TRP A 62 NE1 - CE2 - CZ2 ANGL. DEV. = -6.8 DEGREES REMARK 500 TRP A 62 CH2 - CZ2 - CE2 ANGL. DEV. = -6.8 DEGREES REMARK 500 THR A 63 OG1 - CB - CG2 ANGL. DEV. = -22.9 DEGREES REMARK 500 THR A 63 CA - CB - OG1 ANGL. DEV. = -14.8 DEGREES REMARK 500 THR A 63 CA - CB - CG2 ANGL. DEV. = -13.8 DEGREES REMARK 500 ALA A 65 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 LEU A 67 N - CA - CB ANGL. DEV. = -15.6 DEGREES REMARK 500 ALA A 68 CB - CA - C ANGL. DEV. = 11.1 DEGREES REMARK 500 ALA A 69 N - CA - CB ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 93 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 37 18.67 56.34 REMARK 500 ASN A 73 79.77 -176.12 REMARK 500 PHE A 77 -76.59 -50.74 REMARK 500 MET A 91 -83.32 -63.18 REMARK 500 THR A 92 -74.27 91.03 REMARK 500 PHE A 93 130.50 -30.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 18 0.07 SIDE CHAIN REMARK 500 ASN A 66 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 14 13.48 REMARK 500 HIS A 18 -14.78 REMARK 500 THR A 19 -10.85 REMARK 500 LYS A 27 10.65 REMARK 500 ASN A 31 -11.15 REMARK 500 PHE A 36 -10.40 REMARK 500 GLU A 54 -14.81 REMARK 500 ALA A 68 16.81 REMARK 500 PHE A 77 22.51 REMARK 500 SER A 82 10.33 REMARK 500 ASP A 84 10.93 REMARK 500 PRO A 85 10.93 REMARK 500 SER A 89 -13.77 REMARK 500 TYR A 107 -15.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 113 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEM A 113 NA 94.5 REMARK 620 3 HEM A 113 NB 94.6 89.2 REMARK 620 4 HEM A 113 NC 85.6 178.1 88.9 REMARK 620 5 HEM A 113 ND 88.3 91.5 176.9 90.3 REMARK 620 6 MET A 91 SD 176.0 86.9 89.1 93.1 87.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 113 DBREF 3C2C A 1 112 UNP P00092 CYC2_RHORU 24 135 SEQADV 3C2C ASN A 45 UNP P00092 ASP 68 CONFLICT SEQADV 3C2C ASN A 73 UNP P00092 ASP 96 CONFLICT SEQRES 1 A 112 GLU GLY ASP ALA ALA ALA GLY GLU LYS VAL SER LYS LYS SEQRES 2 A 112 CYS LEU ALA CYS HIS THR PHE ASP GLN GLY GLY ALA ASN SEQRES 3 A 112 LYS VAL GLY PRO ASN LEU PHE GLY VAL PHE GLU ASN THR SEQRES 4 A 112 ALA ALA HIS LYS ASP ASN TYR ALA TYR SER GLU SER TYR SEQRES 5 A 112 THR GLU MET LYS ALA LYS GLY LEU THR TRP THR GLU ALA SEQRES 6 A 112 ASN LEU ALA ALA TYR VAL LYS ASN PRO LYS ALA PHE VAL SEQRES 7 A 112 LEU GLU LYS SER GLY ASP PRO LYS ALA LYS SER LYS MET SEQRES 8 A 112 THR PHE LYS LEU THR LYS ASP ASP GLU ILE GLU ASN VAL SEQRES 9 A 112 ILE ALA TYR LEU LYS THR LEU LYS HET HEM A 113 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *87(H2 O) HELIX 1 A ASP A 3 SER A 11 1 9 HELIX 2 310 SER A 11 CYS A 14 5 4 HELIX 3 A1 CYS A 14 HIS A 18 1 5 HELIX 4 B GLU A 50 LYS A 58 1 9 HELIX 5 C THR A 63 GLY A 83 1BENT AT PRO 74 21 HELIX 6 D LYS A 97 LYS A 109 1 13 LINK NE2 HIS A 18 FE HEM A 113 1555 1555 2.19 LINK SD MET A 91 FE HEM A 113 1555 1555 2.43 SITE 1 AC1 18 CYS A 14 CYS A 17 HIS A 18 GLY A 29 SITE 2 AC1 18 LEU A 32 ALA A 40 ALA A 41 HIS A 42 SITE 3 AC1 18 TYR A 46 TYR A 48 SER A 49 TYR A 52 SITE 4 AC1 18 TRP A 62 TYR A 70 SER A 89 LYS A 90 SITE 5 AC1 18 MET A 91 PHE A 93 CRYST1 32.220 37.360 84.620 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031037 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011818 0.00000