HEADER DNA 25-JAN-08 3C2J TITLE CRYSTAL STRUCTURE ANALYSIS OF TRIOXACARCIN A COVALENTLY BOUND TO TITLE 2 D(AACCGGTT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*DAP*DAP*DCP*DCP*DGP*DGP*DTP*DT)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS DNA-DRUG COMPLEX, BASE FLIPPING, B-DNA, DNA EXPDTA X-RAY DIFFRACTION AUTHOR R.PFOH,G.M.SHELDRICK REVDAT 5 13-MAR-24 3C2J 1 REMARK LINK REVDAT 4 13-JUL-11 3C2J 1 VERSN REVDAT 3 24-FEB-09 3C2J 1 VERSN REVDAT 2 29-JUL-08 3C2J 1 HETNAM HETSYN JRNL REVDAT 1 03-JUN-08 3C2J 0 JRNL AUTH R.PFOH,H.LAATSCH,G.M.SHELDRICK JRNL TITL CRYSTAL STRUCTURE OF TRIOXACARCIN A COVALENTLY BOUND TO DNA JRNL REF NUCLEIC ACIDS RES. V. 36 3508 2008 JRNL REFN ISSN 0305-1048 JRNL PMID 18453630 JRNL DOI 10.1093/NAR/GKN245 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 6802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 322 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 500 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 180 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 780 ; 2.490 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 468 ; 1.566 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 94 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 226 ; 0.025 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 34 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 118 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 227 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 244 ; 0.257 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 112 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 27 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.096 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 14 ; 0.304 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 774 ; 2.039 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 780 ; 3.030 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 RESIDUE RANGE : B 102 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8075 26.7001 10.8679 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0232 REMARK 3 T33: 0.0633 T12: 0.0630 REMARK 3 T13: -0.0403 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 6.0011 L22: 6.9791 REMARK 3 L33: 4.5977 L12: -5.6741 REMARK 3 L13: 4.8055 L23: -5.6437 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: -0.1295 S13: -0.0523 REMARK 3 S21: 0.0054 S22: 0.0876 S23: -0.0697 REMARK 3 S31: -0.0277 S32: -0.1275 S33: -0.0415 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92039, 0.92032, 0.92047 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 37.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : 0.02100 REMARK 200 FOR THE DATA SET : 27.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.98 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 FOR SHELL : 2.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRI-AMMONIUMCITRATE, DMSO, PH 7.0, REMARK 280 HANGING DROP, TEMPERATURE 313K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.81000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.90500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.71500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.81000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.71500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 22.90500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA A 1 N3 DA A 1 C4 0.050 REMARK 500 DG B 106 O3' DG B 106 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 1 N1 - C2 - N3 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA A 1 C2 - N3 - C4 ANGL. DEV. = -5.2 DEGREES REMARK 500 DA A 1 C5 - N7 - C8 ANGL. DEV. = -3.3 DEGREES REMARK 500 DA A 2 N1 - C6 - N6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC A 3 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC A 4 C2 - N3 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC A 4 N1 - C2 - O2 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 5 O5' - P - OP2 ANGL. DEV. = -6.1 DEGREES REMARK 500 DG A 5 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = -8.1 DEGREES REMARK 500 DG A 6 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA B 101 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DA B 101 C1' - O4' - C4' ANGL. DEV. = -10.4 DEGREES REMARK 500 DA B 101 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA B 102 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA B 102 C5 - C6 - N1 ANGL. DEV. = -3.5 DEGREES REMARK 500 DC B 103 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG B 105 C2 - N3 - C4 ANGL. DEV. = -3.3 DEGREES REMARK 500 DG B 106 O4' - C1' - N9 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GGT A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GGT B 109 DBREF 3C2J A 1 8 PDB 3C2J 3C2J 1 8 DBREF 3C2J B 101 108 PDB 3C2J 3C2J 101 108 SEQRES 1 A 8 DA DA DC DC DG DG DT DT SEQRES 1 B 8 DA DA DC DC DG DG DT DT HET GGT A 9 62 HET GGT B 109 62 HETNAM GGT TRIOXACARCIN A HETSYN GGT (1S,2R,3AS,4S,8S,10S,13AS)-13A-[(4-C-ACETYL-2,6- HETSYN 2 GGT DIDEOXY-ALPHA-L-XYLO-HEXOPYRANOSYL)OXY]-2- HETSYN 3 GGT (DIMETHOXYMETHYL)-10,12-DIHYDROXY-7-METHOXY-5-METHYL- HETSYN 4 GGT 11-OXO-3A,8,9,10,11,13A-HEXAHYDRO-4H-SPIRO[2,4- HETSYN 5 GGT EPOXYFURO[3,2-B]NAPHTHO[2,3-H]CHROMENE-1,2'-OXIRAN]-8- HETSYN 6 GGT YL 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-ALPHA-L-XYLO- HETSYN 7 GGT HEXOPYRANOSIDE FORMUL 3 GGT 2(C42 H52 O20) FORMUL 5 HOH *21(H2 O) LINK N7 DG A 6 C17 GGT A 9 1555 1555 1.45 LINK N7 DG B 106 C17 GGT B 109 1555 1555 1.42 SITE 1 AC1 14 DA A 1 DG A 5 DG A 6 DT A 7 SITE 2 AC1 14 DT A 8 HOH A 201 HOH A 202 HOH A 208 SITE 3 AC1 14 HOH A 215 DA B 101 DA B 102 DC B 103 SITE 4 AC1 14 DC B 104 HOH B 217 SITE 1 AC2 11 DA A 1 DA A 2 DC A 3 DC A 4 SITE 2 AC2 11 HOH A 213 DG B 105 DG B 106 DT B 107 SITE 3 AC2 11 DT B 108 HOH B 210 HOH B 211 CRYST1 37.600 37.600 91.620 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010915 0.00000 TER 162 DT A 8 TER 324 DT B 108 HETATM 325 O44 GGT A 9 29.845 39.877 7.716 1.00 65.26 O HETATM 326 C48 GGT A 9 28.911 39.443 7.040 1.00 62.33 C HETATM 327 C47 GGT A 9 29.097 39.242 5.551 1.00 63.59 C HETATM 328 C44 GGT A 9 27.568 39.090 7.753 1.00 58.33 C HETATM 329 O43 GGT A 9 27.104 40.167 8.548 1.00 63.01 O HETATM 330 C43 GGT A 9 27.853 37.897 8.706 1.00 55.57 C HETATM 331 O42 GGT A 9 28.552 36.864 8.011 1.00 54.47 O HETATM 332 C42 GGT A 9 26.589 37.322 9.367 1.00 51.30 C HETATM 333 C45 GGT A 9 26.387 38.762 6.832 1.00 58.15 C HETATM 334 C46 GGT A 9 25.872 39.879 5.867 1.00 56.70 C HETATM 335 O41 GGT A 9 25.262 38.397 7.712 1.00 53.83 O HETATM 336 C41 GGT A 9 25.472 37.141 8.363 1.00 51.78 C HETATM 337 O11 GGT A 9 25.878 36.126 7.451 1.00 48.65 O HETATM 338 C13 GGT A 9 24.906 35.329 6.872 1.00 47.53 C HETATM 339 C14 GGT A 9 25.731 34.371 5.886 1.00 47.31 C HETATM 340 C17 GGT A 9 25.852 32.898 6.226 1.00 46.01 C HETATM 341 O12 GGT A 9 27.063 34.839 5.723 1.00 47.11 O HETATM 342 C15 GGT A 9 25.015 34.710 4.587 1.00 45.89 C HETATM 343 O8 GGT A 9 24.830 36.133 4.707 1.00 47.58 O HETATM 344 C12 GGT A 9 23.994 36.037 5.884 1.00 44.29 C HETATM 345 C16 GGT A 9 25.729 34.399 3.293 1.00 45.14 C HETATM 346 O9 GGT A 9 25.356 35.303 2.260 1.00 47.85 O HETATM 347 C33 GGT A 9 23.967 35.252 1.789 1.00 51.50 C HETATM 348 O10 GGT A 9 25.443 33.101 2.958 1.00 45.55 O HETATM 349 C32 GGT A 9 26.440 32.469 2.096 1.00 45.65 C HETATM 350 O7 GGT A 9 23.704 34.117 4.591 1.00 44.71 O HETATM 351 C11 GGT A 9 22.945 35.012 5.415 1.00 45.72 C HETATM 352 C7 GGT A 9 22.286 34.359 6.584 1.00 43.85 C HETATM 353 C6 GGT A 9 20.998 33.816 6.364 1.00 44.68 C HETATM 354 C31 GGT A 9 20.416 33.775 4.940 1.00 43.51 C HETATM 355 O6 GGT A 9 24.181 34.804 7.987 1.00 45.95 O HETATM 356 C8 GGT A 9 22.889 34.360 7.824 1.00 46.05 C HETATM 357 C25 GGT A 9 22.231 33.785 8.928 1.00 42.25 C HETATM 358 C26 GGT A 9 20.966 33.226 8.710 1.00 43.33 C HETATM 359 C5 GGT A 9 20.376 33.235 7.428 1.00 44.15 C HETATM 360 C10 GGT A 9 20.272 32.660 9.804 1.00 44.74 C HETATM 361 O4 GGT A 9 19.065 32.077 9.635 1.00 45.88 O HETATM 362 C30 GGT A 9 19.002 30.673 9.304 1.00 46.44 C HETATM 363 C28 GGT A 9 20.799 32.703 11.027 1.00 43.93 C HETATM 364 C27 GGT A 9 22.066 33.299 11.261 1.00 43.15 C HETATM 365 C9 GGT A 9 22.770 33.869 10.241 1.00 44.56 C HETATM 366 O5 GGT A 9 23.964 34.479 10.469 1.00 44.89 O HETATM 367 C4 GGT A 9 19.972 32.061 12.175 1.00 46.65 C HETATM 368 C3 GGT A 9 20.348 32.718 13.486 1.00 46.90 C HETATM 369 C2 GGT A 9 21.817 32.669 13.732 1.00 47.15 C HETATM 370 O2 GGT A 9 22.007 33.290 14.984 1.00 54.54 O HETATM 371 C1 GGT A 9 22.575 33.338 12.615 1.00 45.84 C HETATM 372 O3 GGT A 9 23.563 34.039 12.866 1.00 47.82 O HETATM 373 O1 GGT A 9 20.192 30.649 12.251 1.00 48.90 O HETATM 374 C1' GGT A 9 19.280 30.019 13.168 1.00 52.89 C HETATM 375 O1' GGT A 9 19.810 30.048 14.490 1.00 51.70 O HETATM 376 C5' GGT A 9 20.929 29.187 14.796 1.00 53.21 C HETATM 377 C9' GGT A 9 21.283 29.386 16.267 1.00 53.48 C HETATM 378 C4' GGT A 9 20.619 27.746 14.445 1.00 51.24 C HETATM 379 C3' GGT A 9 20.166 27.618 13.002 1.00 54.19 C HETATM 380 O2' GGT A 9 21.359 27.927 12.218 1.00 54.85 O HETATM 381 C8' GGT A 9 19.780 26.170 12.727 1.00 55.12 C HETATM 382 C2' GGT A 9 18.993 28.577 12.785 1.00 52.83 C HETATM 383 O3' GGT A 9 19.514 27.363 15.270 1.00 50.12 O HETATM 384 C6' GGT A 9 19.623 26.207 16.032 1.00 48.87 C HETATM 385 O4' GGT A 9 20.560 25.446 15.989 1.00 50.66 O HETATM 386 C7' GGT A 9 18.401 26.024 16.843 1.00 50.04 C HETATM 387 O44 GGT B 109 33.290 19.846 21.586 1.00 60.67 O HETATM 388 C48 GGT B 109 32.833 19.361 20.539 1.00 52.30 C HETATM 389 C47 GGT B 109 31.615 18.491 20.497 1.00 47.22 C HETATM 390 C44 GGT B 109 33.523 19.663 19.218 1.00 47.24 C HETATM 391 O43 GGT B 109 34.960 19.577 19.424 1.00 47.63 O HETATM 392 C43 GGT B 109 33.098 21.069 18.816 1.00 46.71 C HETATM 393 O42 GGT B 109 31.692 21.250 18.849 1.00 48.13 O HETATM 394 C42 GGT B 109 33.465 21.415 17.420 1.00 44.53 C HETATM 395 C45 GGT B 109 33.057 18.664 18.140 1.00 45.12 C HETATM 396 C46 GGT B 109 33.544 17.240 18.254 1.00 46.71 C HETATM 397 O41 GGT B 109 33.636 19.066 16.862 1.00 48.79 O HETATM 398 C41 GGT B 109 33.154 20.339 16.385 1.00 44.11 C HETATM 399 O11 GGT B 109 31.722 20.397 16.266 1.00 46.67 O HETATM 400 C13 GGT B 109 31.058 19.726 15.279 1.00 48.22 C HETATM 401 C14 GGT B 109 29.530 20.053 15.615 1.00 47.06 C HETATM 402 C17 GGT B 109 28.787 20.964 14.651 1.00 45.98 C HETATM 403 O12 GGT B 109 29.353 20.640 16.920 1.00 46.21 O HETATM 404 C15 GGT B 109 29.040 18.611 15.665 1.00 47.99 C HETATM 405 O8 GGT B 109 30.092 17.934 16.358 1.00 49.12 O HETATM 406 C12 GGT B 109 31.048 18.201 15.327 1.00 48.83 C HETATM 407 C16 GGT B 109 27.710 18.383 16.344 1.00 51.20 C HETATM 408 O9 GGT B 109 27.496 17.021 16.477 1.00 55.52 O HETATM 409 C33 GGT B 109 27.550 16.619 17.853 1.00 58.97 C HETATM 410 O10 GGT B 109 26.698 18.884 15.533 1.00 53.35 O HETATM 411 C32 GGT B 109 25.562 19.374 16.268 1.00 47.67 C HETATM 412 O7 GGT B 109 29.012 18.072 14.332 1.00 47.26 O HETATM 413 C11 GGT B 109 30.382 17.719 14.051 1.00 48.61 C HETATM 414 C7 GGT B 109 31.040 18.269 12.805 1.00 47.91 C HETATM 415 C6 GGT B 109 31.007 17.553 11.564 1.00 49.60 C HETATM 416 C31 GGT B 109 30.204 16.258 11.443 1.00 48.53 C HETATM 417 O6 GGT B 109 31.704 20.157 14.096 1.00 48.78 O HETATM 418 C8 GGT B 109 31.744 19.456 12.906 1.00 49.72 C HETATM 419 C25 GGT B 109 32.441 19.999 11.787 1.00 47.49 C HETATM 420 C26 GGT B 109 32.376 19.321 10.574 1.00 47.69 C HETATM 421 C5 GGT B 109 31.669 18.072 10.467 1.00 47.72 C HETATM 422 C10 GGT B 109 33.082 19.867 9.461 1.00 48.69 C HETATM 423 O4 GGT B 109 33.082 19.229 8.236 1.00 50.23 O HETATM 424 C30 GGT B 109 32.046 19.659 7.340 1.00 56.59 C HETATM 425 C28 GGT B 109 33.820 21.012 9.564 1.00 48.02 C HETATM 426 C27 GGT B 109 33.893 21.713 10.776 1.00 47.49 C HETATM 427 C9 GGT B 109 33.234 21.196 11.885 1.00 47.50 C HETATM 428 O5 GGT B 109 33.282 21.843 13.068 1.00 47.07 O HETATM 429 C4 GGT B 109 34.539 21.493 8.312 1.00 48.97 C HETATM 430 C3 GGT B 109 35.750 22.370 8.669 1.00 49.68 C HETATM 431 C2 GGT B 109 35.373 23.488 9.606 1.00 48.77 C HETATM 432 O2 GGT B 109 36.552 24.224 9.967 1.00 49.44 O HETATM 433 C1 GGT B 109 34.709 22.925 10.851 1.00 48.22 C HETATM 434 O3 GGT B 109 34.949 23.415 11.984 1.00 48.20 O HETATM 435 O1 GGT B 109 33.602 22.243 7.529 1.00 55.26 O HETATM 436 C1' GGT B 109 34.096 22.483 6.189 1.00 53.84 C HETATM 437 O1' GGT B 109 34.778 23.735 6.102 1.00 54.75 O HETATM 438 C5' GGT B 109 33.966 24.894 6.339 1.00 55.23 C HETATM 439 C9' GGT B 109 34.887 26.124 6.327 1.00 55.49 C HETATM 440 C4' GGT B 109 32.980 24.914 5.192 1.00 55.97 C HETATM 441 C3' GGT B 109 32.113 23.647 5.152 1.00 56.61 C HETATM 442 O2' GGT B 109 31.339 23.847 6.355 1.00 55.61 O HETATM 443 C8' GGT B 109 31.231 23.577 3.897 1.00 57.88 C HETATM 444 C2' GGT B 109 32.978 22.408 5.185 1.00 52.61 C HETATM 445 O3' GGT B 109 33.887 24.926 4.046 1.00 57.19 O HETATM 446 C6' GGT B 109 33.562 25.701 2.977 1.00 57.27 C HETATM 447 O4' GGT B 109 32.773 26.598 3.070 1.00 53.46 O HETATM 448 C7' GGT B 109 34.344 25.269 1.785 1.00 58.23 C HETATM 449 O HOH A 201 23.077 31.655 2.967 1.00 50.36 O HETATM 450 O HOH A 202 25.230 40.270 9.795 1.00 63.83 O HETATM 451 O HOH A 203 21.839 41.781 8.374 1.00 59.89 O HETATM 452 O HOH A 205 23.187 39.151 3.093 1.00 71.36 O HETATM 453 O HOH A 206 23.164 26.090 8.883 1.00 67.81 O HETATM 454 O HOH A 207 25.230 26.033 6.905 1.00 57.32 O HETATM 455 O HOH A 208 21.107 27.973 9.445 1.00 54.59 O HETATM 456 O HOH A 212 21.708 38.215 5.167 1.00 53.58 O HETATM 457 O HOH A 213 18.771 38.188 5.376 1.00 49.40 O HETATM 458 O HOH A 214 13.385 34.556 3.095 1.00 56.51 O HETATM 459 O HOH A 215 22.950 39.375 7.436 1.00 58.88 O HETATM 460 O HOH A 216 16.973 27.673 1.988 1.00 68.19 O HETATM 461 O HOH A 218 36.601 28.911 16.860 1.00 66.57 O HETATM 462 O HOH A 219 32.889 28.948 16.544 1.00 93.34 O HETATM 463 O HOH A 220 33.106 30.315 13.671 1.00 78.89 O HETATM 464 O HOH B 204 25.309 23.166 8.639 1.00 71.74 O HETATM 465 O HOH B 209 29.776 26.025 15.734 1.00 68.00 O HETATM 466 O HOH B 210 29.569 21.976 7.200 1.00 70.91 O HETATM 467 O HOH B 211 39.266 23.289 9.822 1.00 73.52 O HETATM 468 O HOH B 217 23.229 26.061 12.656 1.00 63.74 O HETATM 469 O HOH B 221 30.329 32.070 15.350 1.00 77.14 O CONECT 113 340 CONECT 275 402 CONECT 325 326 CONECT 326 325 327 328 CONECT 327 326 CONECT 328 326 329 330 333 CONECT 329 328 CONECT 330 328 331 332 CONECT 331 330 CONECT 332 330 336 CONECT 333 328 334 335 CONECT 334 333 CONECT 335 333 336 CONECT 336 332 335 337 CONECT 337 336 338 CONECT 338 337 339 344 355 CONECT 339 338 340 341 342 CONECT 340 113 339 341 CONECT 341 339 340 CONECT 342 339 343 345 350 CONECT 343 342 344 CONECT 344 338 343 351 CONECT 345 342 346 348 CONECT 346 345 347 CONECT 347 346 CONECT 348 345 349 CONECT 349 348 CONECT 350 342 351 CONECT 351 344 350 352 CONECT 352 351 353 356 CONECT 353 352 354 359 CONECT 354 353 CONECT 355 338 356 CONECT 356 352 355 357 CONECT 357 356 358 365 CONECT 358 357 359 360 CONECT 359 353 358 CONECT 360 358 361 363 CONECT 361 360 362 CONECT 362 361 CONECT 363 360 364 367 CONECT 364 363 365 371 CONECT 365 357 364 366 CONECT 366 365 CONECT 367 363 368 373 CONECT 368 367 369 CONECT 369 368 370 371 CONECT 370 369 CONECT 371 364 369 372 CONECT 372 371 CONECT 373 367 374 CONECT 374 373 375 382 CONECT 375 374 376 CONECT 376 375 377 378 CONECT 377 376 CONECT 378 376 379 383 CONECT 379 378 380 381 382 CONECT 380 379 CONECT 381 379 CONECT 382 374 379 CONECT 383 378 384 CONECT 384 383 385 386 CONECT 385 384 CONECT 386 384 CONECT 387 388 CONECT 388 387 389 390 CONECT 389 388 CONECT 390 388 391 392 395 CONECT 391 390 CONECT 392 390 393 394 CONECT 393 392 CONECT 394 392 398 CONECT 395 390 396 397 CONECT 396 395 CONECT 397 395 398 CONECT 398 394 397 399 CONECT 399 398 400 CONECT 400 399 401 406 417 CONECT 401 400 402 403 404 CONECT 402 275 401 403 CONECT 403 401 402 CONECT 404 401 405 407 412 CONECT 405 404 406 CONECT 406 400 405 413 CONECT 407 404 408 410 CONECT 408 407 409 CONECT 409 408 CONECT 410 407 411 CONECT 411 410 CONECT 412 404 413 CONECT 413 406 412 414 CONECT 414 413 415 418 CONECT 415 414 416 421 CONECT 416 415 CONECT 417 400 418 CONECT 418 414 417 419 CONECT 419 418 420 427 CONECT 420 419 421 422 CONECT 421 415 420 CONECT 422 420 423 425 CONECT 423 422 424 CONECT 424 423 CONECT 425 422 426 429 CONECT 426 425 427 433 CONECT 427 419 426 428 CONECT 428 427 CONECT 429 425 430 435 CONECT 430 429 431 CONECT 431 430 432 433 CONECT 432 431 CONECT 433 426 431 434 CONECT 434 433 CONECT 435 429 436 CONECT 436 435 437 444 CONECT 437 436 438 CONECT 438 437 439 440 CONECT 439 438 CONECT 440 438 441 445 CONECT 441 440 442 443 444 CONECT 442 441 CONECT 443 441 CONECT 444 436 441 CONECT 445 440 446 CONECT 446 445 447 448 CONECT 447 446 CONECT 448 446 MASTER 336 0 2 0 0 0 7 6 467 2 126 2 END