HEADER TRANSFERASE 25-JAN-08 3C2V TITLE CRYSTAL STRUCTURE OF THE QUINOLINATE PHOSPHORIBOSYL TRANSFERASE (BNA6) TITLE 2 FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH PRPP AND THE INHIBITOR TITLE 3 PHTHALATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: QUINOLINATE PHOSPHORIBOSYLTRANSFERASE, QAPRTASE; COMPND 5 EC: 2.4.2.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: BNA6, QPT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21*; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS QPRTASE, PRTASE, BNA6, QUINOLINATE, PHTHALATE, PRPP, CYTOPLASM, KEYWDS 2 GLYCOSYLTRANSFERASE, NUCLEUS, PYRIDINE NUCLEOTIDE BIOSYNTHESIS, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.DI LUCCIO,D.K.WILSON REVDAT 6 21-FEB-24 3C2V 1 HETSYN REVDAT 5 29-JUL-20 3C2V 1 COMPND REMARK HETNAM SITE REVDAT 4 25-OCT-17 3C2V 1 REMARK REVDAT 3 24-FEB-09 3C2V 1 VERSN REVDAT 2 22-APR-08 3C2V 1 JRNL REVDAT 1 01-APR-08 3C2V 0 JRNL AUTH E.DI LUCCIO,D.K.WILSON JRNL TITL COMPREHENSIVE X-RAY STRUCTURAL STUDIES OF THE QUINOLINATE JRNL TITL 2 PHOSPHORIBOSYL TRANSFERASE (BNA6) FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE. JRNL REF BIOCHEMISTRY V. 47 4039 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18321072 JRNL DOI 10.1021/BI7020475 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 12818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2067 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.24000 REMARK 3 B22 (A**2) : -5.24000 REMARK 3 B33 (A**2) : 7.86000 REMARK 3 B12 (A**2) : -2.62000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.446 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2135 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2894 ; 1.675 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ;12.026 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;40.358 ;24.944 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;15.100 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.919 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.578 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1572 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1232 ; 0.313 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1502 ; 0.336 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 108 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 0.983 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2136 ; 1.704 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 867 ; 2.131 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 758 ; 3.093 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 2000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, SAINT REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 3.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 FOR SHELL : 3.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M AMMONIUM FORMATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 77.33400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.64881 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 23.11533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 77.33400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.64881 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 23.11533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 77.33400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.64881 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 23.11533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 77.33400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 44.64881 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 23.11533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 77.33400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 44.64881 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 23.11533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 77.33400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 44.64881 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.11533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 89.29761 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 46.23067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 89.29761 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 46.23067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 89.29761 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 46.23067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 89.29761 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 46.23067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 89.29761 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 46.23067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 89.29761 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 46.23067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35830 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.34600 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 69.34600 REMARK 350 BIOMT1 5 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 69.34600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 229 REMARK 465 LYS A 230 REMARK 465 GLY A 231 REMARK 465 ASP A 232 REMARK 465 GLY A 233 REMARK 465 LEU A 234 REMARK 465 LYS A 235 REMARK 465 MET A 236 REMARK 465 CYS A 237 REMARK 465 ALA A 238 REMARK 465 GLN A 239 REMARK 465 SER A 240 REMARK 465 LEU A 241 REMARK 465 LYS A 242 REMARK 465 ASN A 243 REMARK 465 LYS A 244 REMARK 465 TRP A 245 REMARK 465 ASN A 246 REMARK 465 GLY A 247 REMARK 465 LYS A 248 REMARK 465 LYS A 249 REMARK 465 GLU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 188 ND2 ASN A 192 2.12 REMARK 500 OG SER A 278 O1P PRP A 300 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 197 CB CYS A 197 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 28 CB - CA - C ANGL. DEV. = -14.9 DEGREES REMARK 500 ASP A 30 N - CA - C ANGL. DEV. = -24.2 DEGREES REMARK 500 LYS A 84 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 ILE A 180 CB - CA - C ANGL. DEV. = -29.0 DEGREES REMARK 500 PHE A 251 CB - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 PHE A 251 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 LEU A 261 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 5 -7.56 -57.41 REMARK 500 SER A 28 -34.67 -132.72 REMARK 500 HIS A 165 -179.37 68.82 REMARK 500 SER A 171 -160.01 -107.69 REMARK 500 MET A 172 126.31 -23.61 REMARK 500 ASN A 178 22.46 -151.75 REMARK 500 SER A 185 170.41 176.86 REMARK 500 ASP A 262 -42.18 -134.18 REMARK 500 ASN A 263 -50.92 -131.51 REMARK 500 HIS A 281 -38.85 -137.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 177 ASN A 178 -106.49 REMARK 500 TRP A 181 ALA A 182 -30.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C2R RELATED DB: PDB REMARK 900 RELATED ID: 3C2O RELATED DB: PDB REMARK 900 RELATED ID: 3C2F RELATED DB: PDB REMARK 900 RELATED ID: 3C2E RELATED DB: PDB REMARK 900 RELATED ID: 3C2D RELATED DB: PDB DBREF 3C2V A 2 295 UNP P43619 NADC_YEAST 2 295 SEQRES 1 A 294 PRO VAL TYR GLU HIS LEU LEU PRO VAL ASN GLY ALA TRP SEQRES 2 A 294 ARG GLN ASP VAL THR ASN TRP LEU SER GLU ASP VAL PRO SEQRES 3 A 294 SER PHE ASP PHE GLY GLY TYR VAL VAL GLY SER ASP LEU SEQRES 4 A 294 LYS GLU ALA ASN LEU TYR CYS LYS GLN ASP GLY MET LEU SEQRES 5 A 294 CYS GLY VAL PRO PHE ALA GLN GLU VAL PHE ASN GLN CYS SEQRES 6 A 294 GLU LEU GLN VAL GLU TRP LEU PHE LYS GLU GLY SER PHE SEQRES 7 A 294 LEU GLU PRO SER LYS ASN ASP SER GLY LYS ILE VAL VAL SEQRES 8 A 294 ALA LYS ILE THR GLY PRO ALA LYS ASN ILE LEU LEU ALA SEQRES 9 A 294 GLU ARG THR ALA LEU ASN ILE LEU SER ARG SER SER GLY SEQRES 10 A 294 ILE ALA THR ALA SER HIS LYS ILE ILE SER LEU ALA ARG SEQRES 11 A 294 SER THR GLY TYR LYS GLY THR ILE ALA GLY THR ARG LYS SEQRES 12 A 294 THR THR PRO GLY LEU ARG ARG LEU GLU LYS TYR SER MET SEQRES 13 A 294 LEU VAL GLY GLY CYS ASP THR HIS ARG TYR ASP LEU SER SEQRES 14 A 294 SER MET VAL MET LEU LYS ASP ASN HIS ILE TRP ALA THR SEQRES 15 A 294 GLY SER ILE THR ASN ALA VAL LYS ASN ALA ARG ALA VAL SEQRES 16 A 294 CYS GLY PHE ALA VAL LYS ILE GLU VAL GLU CYS LEU SER SEQRES 17 A 294 GLU ASP GLU ALA THR GLU ALA ILE GLU ALA GLY ALA ASP SEQRES 18 A 294 VAL ILE MET LEU ASP ASN PHE LYS GLY ASP GLY LEU LYS SEQRES 19 A 294 MET CYS ALA GLN SER LEU LYS ASN LYS TRP ASN GLY LYS SEQRES 20 A 294 LYS HIS PHE LEU LEU GLU CYS SER GLY GLY LEU ASN LEU SEQRES 21 A 294 ASP ASN LEU GLU GLU TYR LEU CYS ASP ASP ILE ASP ILE SEQRES 22 A 294 TYR SER THR SER SER ILE HIS GLN GLY THR PRO VAL ILE SEQRES 23 A 294 ASP PHE SER LEU LYS LEU ALA HIS HET PRP A 300 22 HET PHT A 301 12 HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM PHT PHTHALIC ACID HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE FORMUL 2 PRP C5 H13 O14 P3 FORMUL 3 PHT C8 H6 O4 FORMUL 4 HOH *149(H2 O) HELIX 1 1 VAL A 3 LEU A 8 5 6 HELIX 2 2 GLY A 12 VAL A 26 1 15 HELIX 3 3 ASP A 30 GLY A 37 1 8 HELIX 4 4 GLY A 55 CYS A 66 1 12 HELIX 5 5 GLU A 81 ASN A 85 5 5 HELIX 6 6 ALA A 99 THR A 133 1 35 HELIX 7 7 LEU A 149 GLY A 161 1 13 HELIX 8 8 THR A 187 GLY A 198 1 12 HELIX 9 9 SER A 209 GLY A 220 1 12 HELIX 10 10 SER A 278 HIS A 281 5 4 SHEET 1 A 4 GLN A 69 TRP A 72 0 SHEET 2 A 4 ILE A 90 PRO A 98 -1 O THR A 96 N GLN A 69 SHEET 3 A 4 LEU A 40 CYS A 47 -1 N LEU A 45 O VAL A 92 SHEET 4 A 4 PHE A 289 LEU A 293 -1 O SER A 290 N TYR A 46 SHEET 1 B 2 GLY A 51 MET A 52 0 SHEET 2 B 2 PHE A 79 LEU A 80 -1 O LEU A 80 N GLY A 51 SHEET 1 C 6 THR A 138 ALA A 140 0 SHEET 2 C 6 ILE A 274 SER A 276 1 O TYR A 275 N ALA A 140 SHEET 3 C 6 LEU A 252 SER A 256 1 N CYS A 255 O ILE A 274 SHEET 4 C 6 VAL A 223 MET A 225 1 N ILE A 224 O GLU A 254 SHEET 5 C 6 ILE A 203 GLU A 206 1 N VAL A 205 O MET A 225 SHEET 6 C 6 VAL A 173 LEU A 175 1 N LEU A 175 O GLU A 204 CISPEP 1 ASN A 263 LEU A 264 0 -17.95 CRYST1 154.668 154.668 69.346 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006465 0.003733 0.000000 0.00000 SCALE2 0.000000 0.007466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014420 0.00000