HEADER IMMUNE SYSTEM 26-JAN-08 3C2X TITLE CRYSTAL STRUCTURE OF PEPTIDOGLYCAN RECOGNITION PROTEIN AT 1.8A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN RECOGNITION PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PEPTIDOGLYCAN RECOGNITION PROTEIN SHORT, PGRP-S SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: ARABIAN CAMEL; SOURCE 4 ORGANISM_TAXID: 9838 KEYWDS ANTIBIOTIC, SECRETORY, IMMUNE RESPONSE, ANTIMICROBIAL, SECRETED, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.SHARMA,N.SINGH,M.SINHA,S.SHARMA,M.PERBANDT,C.BETZEL,P.KAUR, AUTHOR 2 A.SRINIVASAN,T.P.SINGH REVDAT 6 01-NOV-23 3C2X 1 REMARK REVDAT 5 13-JUL-11 3C2X 1 VERSN REVDAT 4 04-AUG-10 3C2X 1 HEADER REVDAT 3 24-FEB-09 3C2X 1 VERSN REVDAT 2 27-MAY-08 3C2X 1 JRNL REVDAT 1 25-MAR-08 3C2X 0 JRNL AUTH P.SHARMA,N.SINGH,M.SINHA,S.SHARMA,M.PERBANDT,C.BETZEL, JRNL AUTH 2 P.KAUR,A.SRINIVASAN,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF THE PEPTIDOGLYCAN RECOGNITION PROTEIN JRNL TITL 2 AT 1.8 A RESOLUTION REVEALS DUAL STRATEGY TO COMBAT JRNL TITL 3 INFECTION THROUGH TWO INDEPENDENT FUNCTIONAL HOMODIMERS JRNL REF J.MOL.BIOL. V. 378 921 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18395744 JRNL DOI 10.1016/J.JMB.2008.03.018 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 116710.390 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 63669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1595 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10020 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 271 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 739 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.25000 REMARK 3 B22 (A**2) : -11.24000 REMARK 3 B33 (A**2) : -4.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.500 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.950 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.610 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.090 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.660 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 49.70 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ALL.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ALL.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 203 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63669 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 19.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1YCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS-HCL, 20% PEG3350, 0.2M NA-K REMARK 280 TARTARATE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.52200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.94900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.33750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.52200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.94900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.33750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.52200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.94900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.33750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.52200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.94900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.33750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C2 GOL C6749 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 675 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP B 98 CB TRP B 98 CG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 3 CA - N - CD ANGL. DEV. = -9.3 DEGREES REMARK 500 PRO A 4 CA - N - CD ANGL. DEV. = -8.6 DEGREES REMARK 500 PRO A 4 N - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 CYS A 6 CA - C - N ANGL. DEV. = -20.5 DEGREES REMARK 500 CYS A 6 O - C - N ANGL. DEV. = 11.0 DEGREES REMARK 500 GLY A 7 C - N - CA ANGL. DEV. = 20.1 DEGREES REMARK 500 PRO C 4 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO C 4 C - N - CD ANGL. DEV. = -15.5 DEGREES REMARK 500 CYS C 6 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 SER C 8 N - CA - C ANGL. DEV. = -19.7 DEGREES REMARK 500 ASP D 2 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 PRO D 3 C - N - CA ANGL. DEV. = 12.7 DEGREES REMARK 500 CYS D 6 CA - CB - SG ANGL. DEV. = 16.8 DEGREES REMARK 500 GLY D 7 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 SER D 8 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 CYS D 130 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 PRO D 151 CA - N - CD ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 -3.97 -59.83 REMARK 500 PRO A 4 -168.60 -48.62 REMARK 500 ALA A 5 82.19 -45.62 REMARK 500 CYS A 6 115.03 -163.80 REMARK 500 HIS A 93 -19.79 -148.46 REMARK 500 TYR A 111 41.11 -108.11 REMARK 500 ASN A 140 43.00 -108.04 REMARK 500 PRO B 4 86.54 -41.05 REMARK 500 ALA B 5 -146.89 -120.09 REMARK 500 CYS B 6 99.98 -13.86 REMARK 500 SER B 8 50.52 38.02 REMARK 500 HIS B 93 -17.09 -148.05 REMARK 500 TYR B 111 56.97 -102.79 REMARK 500 ASN B 140 51.90 -103.66 REMARK 500 PRO B 151 86.18 -60.00 REMARK 500 PRO B 155 25.84 -72.32 REMARK 500 PRO C 3 73.48 -119.16 REMARK 500 ALA C 5 58.84 -108.79 REMARK 500 HIS C 93 -10.39 -145.71 REMARK 500 ALA C 94 18.02 -142.94 REMARK 500 TYR C 111 45.37 -106.40 REMARK 500 PRO C 151 96.41 -64.58 REMARK 500 ASP D 2 92.62 -160.86 REMARK 500 PRO D 3 150.71 -16.99 REMARK 500 PRO D 4 -85.26 -24.71 REMARK 500 ALA D 39 -2.82 75.00 REMARK 500 ASP D 68 171.91 178.65 REMARK 500 HIS D 93 -15.24 -144.99 REMARK 500 ALA D 94 19.62 -141.16 REMARK 500 TYR D 111 46.26 -109.68 REMARK 500 ASN D 140 43.44 -108.48 REMARK 500 PRO D 151 99.58 -64.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA C 6748 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 6749 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 6750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 6751 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YCK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PEPTIDOGLYCAN RECOGNITION PROTEIN (PGRP- REMARK 900 S) REMARK 900 RELATED ID: 1SXR RELATED DB: PDB REMARK 900 DROSOPHILA PEPTIDOGLYCAN RECOGNITION PROTEIN (PGRP)-SA DBREF 3C2X A 1 171 UNP Q9GK12 PGRP_CAMDR 23 193 DBREF 3C2X B 1 171 UNP Q9GK12 PGRP_CAMDR 23 193 DBREF 3C2X C 1 171 UNP Q9GK12 PGRP_CAMDR 23 193 DBREF 3C2X D 1 171 UNP Q9GK12 PGRP_CAMDR 23 193 SEQRES 1 A 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 A 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 A 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 A 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 A 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 A 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 A 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 A 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 A 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 A 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 A 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 A 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 A 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 A 171 ARG ALA SEQRES 1 B 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 B 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 B 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 B 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 B 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 B 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 B 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 B 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 B 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 B 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 B 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 B 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 B 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 B 171 ARG ALA SEQRES 1 C 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 C 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 C 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 C 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 C 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 C 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 C 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 C 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 C 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 C 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 C 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 C 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 C 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 C 171 ARG ALA SEQRES 1 D 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 D 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 D 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 D 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 D 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 D 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 D 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 D 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 D 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 D 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 D 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 D 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 D 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 D 171 ARG ALA HET GOL A 172 6 HET GOL A 173 6 HET GOL A 174 6 HET GOL A 175 6 HET GOL B 172 6 HET TLA C6748 10 HET GOL C6749 6 HET GOL C6750 6 HET GOL C6751 6 HET SO4 D 502 5 HET GOL D 503 6 HET GOL D 504 6 HET GOL D 505 6 HET GOL D 506 6 HET GOL D 507 6 HETNAM GOL GLYCEROL HETNAM TLA L(+)-TARTARIC ACID HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 13(C3 H8 O3) FORMUL 10 TLA C4 H6 O6 FORMUL 14 SO4 O4 S 2- FORMUL 20 HOH *739(H2 O) HELIX 1 1 THR A 45 ASN A 63 1 19 HELIX 2 2 ALA A 94 ASN A 99 1 6 HELIX 3 3 PRO A 117 LEU A 134 1 18 HELIX 4 4 HIS A 146 GLN A 150 1 5 HELIX 5 5 GLY A 156 THR A 165 1 10 HELIX 6 6 PRO B 11 ARG B 16 5 6 HELIX 7 7 THR B 45 ASN B 63 1 19 HELIX 8 8 ALA B 94 ASN B 99 1 6 HELIX 9 9 PRO B 117 LEU B 134 1 18 HELIX 10 10 GLY B 156 THR B 165 1 10 HELIX 11 11 PRO C 11 ARG C 16 1 6 HELIX 12 12 THR C 45 ASN C 63 1 19 HELIX 13 13 TRP C 98 PRO C 100 5 3 HELIX 14 14 PRO C 117 LEU C 134 1 18 HELIX 15 15 ARG C 147 VAL C 149 5 3 HELIX 16 16 GLY C 156 GLN C 164 1 9 HELIX 17 17 ARG D 12 ARG D 16 5 5 HELIX 18 18 THR D 45 ASN D 63 1 19 HELIX 19 19 ALA D 94 ASN D 99 1 6 HELIX 20 20 PRO D 117 LEU D 134 1 18 HELIX 21 21 ARG D 147 VAL D 149 5 3 HELIX 22 22 GLY D 156 GLN D 164 1 9 SHEET 1 A 5 VAL A 81 GLU A 83 0 SHEET 2 A 5 PHE A 73 ILE A 75 -1 N LEU A 74 O TYR A 82 SHEET 3 A 5 SER A 102 PHE A 107 1 O SER A 106 N ILE A 75 SHEET 4 A 5 VAL A 30 HIS A 37 1 N TYR A 32 O ILE A 103 SHEET 5 A 5 LEU A 137 GLY A 145 1 O LYS A 144 N VAL A 33 SHEET 1 B 6 ILE B 9 VAL B 10 0 SHEET 2 B 6 VAL B 81 GLU B 83 1 O VAL B 81 N VAL B 10 SHEET 3 B 6 PHE B 73 ILE B 75 -1 N LEU B 74 O TYR B 82 SHEET 4 B 6 SER B 102 PHE B 107 1 O SER B 106 N ILE B 75 SHEET 5 B 6 VAL B 30 HIS B 37 1 N SER B 36 O PHE B 107 SHEET 6 B 6 LEU B 137 GLY B 145 1 O ARG B 138 N VAL B 30 SHEET 1 C 6 ILE C 9 VAL C 10 0 SHEET 2 C 6 VAL C 81 GLU C 83 1 O VAL C 81 N VAL C 10 SHEET 3 C 6 PHE C 73 ILE C 75 -1 N LEU C 74 O TYR C 82 SHEET 4 C 6 SER C 102 PHE C 107 1 O SER C 106 N ILE C 75 SHEET 5 C 6 VAL C 30 HIS C 37 1 N SER C 36 O PHE C 107 SHEET 6 C 6 LEU C 137 GLY C 145 1 O LYS C 144 N VAL C 35 SHEET 1 D 5 VAL D 81 GLU D 83 0 SHEET 2 D 5 PHE D 73 ILE D 75 -1 N LEU D 74 O TYR D 82 SHEET 3 D 5 SER D 102 PHE D 107 1 O SER D 106 N ILE D 75 SHEET 4 D 5 VAL D 30 HIS D 37 1 N VAL D 34 O ILE D 103 SHEET 5 D 5 LEU D 137 GLY D 145 1 O GLU D 142 N ARG D 31 SSBOND 1 CYS A 6 CYS A 130 1555 1555 1.94 SSBOND 2 CYS A 22 CYS A 67 1555 1555 2.10 SSBOND 3 CYS A 43 CYS A 49 1555 1555 2.04 SSBOND 4 CYS B 6 CYS B 130 1555 1555 1.75 SSBOND 5 CYS B 22 CYS B 67 1555 1555 2.04 SSBOND 6 CYS B 43 CYS B 49 1555 1555 2.05 SSBOND 7 CYS C 6 CYS C 130 1555 1555 2.03 SSBOND 8 CYS C 22 CYS C 67 1555 1555 2.04 SSBOND 9 CYS C 43 CYS C 49 1555 1555 2.03 SSBOND 10 CYS D 6 CYS D 130 1555 1555 2.03 SSBOND 11 CYS D 22 CYS D 67 1555 1555 2.03 SSBOND 12 CYS D 43 CYS D 49 1555 1555 2.03 CISPEP 1 ARG A 28 PRO A 29 0 1.19 CISPEP 2 SER A 154 PRO A 155 0 5.31 CISPEP 3 ARG B 28 PRO B 29 0 -0.13 CISPEP 4 SER B 154 PRO B 155 0 7.31 CISPEP 5 ARG C 28 PRO C 29 0 0.01 CISPEP 6 SER C 154 PRO C 155 0 -5.45 CISPEP 7 ARG D 28 PRO D 29 0 -0.16 CISPEP 8 SER D 154 PRO D 155 0 6.36 SITE 1 AC1 4 TRP C 66 PRO D 96 THR D 97 GLN D 150 SITE 1 AC2 10 HIS C 37 ALA C 39 THR C 152 LEU C 153 SITE 2 AC2 10 SER C 154 HIS D 37 ALA D 39 THR D 152 SITE 3 AC2 10 LEU D 153 SER D 154 SITE 1 AC3 4 GLY A 40 SER A 41 GLN A 52 ASN A 55 SITE 1 AC4 4 GLY B 40 SER B 41 GLN B 52 ASN B 55 SITE 1 AC5 2 HIS C 42 ARG C 114 SITE 1 AC6 6 LYS C 90 GLY C 95 PRO C 96 ASN C 99 SITE 2 AC6 6 PRO C 100 PRO D 96 SITE 1 AC7 2 TYR C 32 TRP C 98 SITE 1 AC8 6 PRO C 151 THR C 152 HIS D 37 ALA D 39 SITE 2 AC8 6 TYR D 71 HIS D 146 SITE 1 AC9 2 SER A 139 HIS A 168 SITE 1 BC1 3 ARG A 25 GLU A 83 ASN A 88 SITE 1 BC2 5 PRO C 96 LYS D 90 GLY D 95 PRO D 96 SITE 2 BC2 5 ASN D 99 SITE 1 BC3 3 LYS A 90 PRO A 96 ASN A 99 SITE 1 BC4 3 ARG D 147 LEU D 153 ASP D 157 SITE 1 BC5 2 ASN A 113 ARG D 170 SITE 1 BC6 1 HIS D 42 CRYST1 87.044 101.898 162.675 90.00 90.00 90.00 I 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011488 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006147 0.00000