HEADER DE NOVO PROTEIN 28-JAN-08 3C3G TITLE ALPHA/BETA-PEPTIDE HELIX BUNDLES: THE GCN4-PLI SIDE CHAIN SEQUENCE ON TITLE 2 AN (ALPHA-ALPHA-BETA) BACKBONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA PEPTIDE WITH THE GCN4-PLI SIDE CHAIN SEQUENCE ON COMPND 3 AN (ALPHA-ALPHA-BETA) BACKBONE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS HELIX BUNDLE, FOLDAMER, ALPHA/BETA-PEPTIDE, UNKNOWN FUNCTION, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.S.HORNE,J.L.PRICE,S.H.GELLMAN REVDAT 9 10-JUL-24 3C3G 1 REMARK REVDAT 8 15-NOV-23 3C3G 1 REMARK LINK ATOM REVDAT 7 13-JUL-11 3C3G 1 VERSN REVDAT 6 23-JUN-09 3C3G 1 REMARK REVDAT 5 12-MAY-09 3C3G 1 REMARK REVDAT 4 24-FEB-09 3C3G 1 VERSN REVDAT 3 12-AUG-08 3C3G 1 JRNL REVDAT 2 24-JUN-08 3C3G 1 REMARK REVDAT 1 17-JUN-08 3C3G 0 JRNL AUTH W.S.HORNE,J.L.PRICE,S.H.GELLMAN JRNL TITL INTERPLAY AMONG SIDE CHAIN SEQUENCE, BACKBONE COMPOSITION, JRNL TITL 2 AND RESIDUE RIGIDIFICATION IN POLYPEPTIDE FOLDING AND JRNL TITL 3 ASSEMBLY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 9151 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18587049 JRNL DOI 10.1073/PNAS.0801135105 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 3341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 152 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 224 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 254 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -1.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.269 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 264 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 201 ; 0.018 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 348 ; 2.139 ; 2.253 REMARK 3 BOND ANGLES OTHERS (DEGREES): 499 ; 1.412 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 11 ; 6.933 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 5 ;46.232 ;26.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 38 ;13.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 41 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 222 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 42 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 42 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 223 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 86 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 171 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 32 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 20 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 167 ; 1.263 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 73 ; 0.223 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 249 ; 1.514 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 113 ; 2.484 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 98 ; 3.904 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GOBEL MIRRORS REMARK 200 OPTICS : CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3507 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 36.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35800 REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 4.3 M NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 19.20700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 19.20700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 19.20700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 19.20700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 19.20700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 19.20700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 19.20700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 19.20700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 38.41400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 19.20700 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -19.20700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 19.20700 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 19.20700 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 79 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 32 REMARK 465 ARG A 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HMR A 1 CZ NH1 NH2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 B3Q A 4 CD CE NF2 OF1 REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 B3K A 28 CD CE CF NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 15 H31 GOL A 34 1.09 REMARK 500 HD1 HIS A 18 OF1 B3E A 22 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HMR A 25 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 BIL A 19 -81.63 -15.87 REMARK 500 HMR A 25 -66.41 -20.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 B3Q A 4 ILE A 5 147.29 REMARK 500 B3D A 7 LYS A 8 143.87 REMARK 500 B3E A 10 GLU A 11 147.00 REMARK 500 B3L A 13 SER A 14 148.99 REMARK 500 B3L A 13 SER A 14 149.09 REMARK 500 B3L A 16 TYR A 17 145.62 REMARK 500 HIS A 18 BIL A 19 136.99 REMARK 500 B3E A 22 LEU A 23 144.83 REMARK 500 ALA A 24 HMR A 25 137.76 REMARK 500 B3K A 28 LEU A 29 145.91 REMARK 500 LEU A 30 BAL A 31 -137.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 B3Q A 4 -17.72 REMARK 500 B3D A 7 -17.86 REMARK 500 B3E A 10 -16.86 REMARK 500 B3L A 13 -15.94 REMARK 500 B3L A 16 -17.79 REMARK 500 B3E A 22 -18.78 REMARK 500 B3K A 28 -17.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 34 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GCL RELATED DB: PDB REMARK 900 SAME PRIMARY SEQUENCE OF SIDE CHAINS ON AN ALL ALPHA-RESIDUE REMARK 900 BACKBONE REMARK 900 RELATED ID: 1UO2 RELATED DB: PDB REMARK 900 SAME PRIMARY SEQUENCE OF SIDE CHAINS ON AN ALL ALPHA-RESIDUE REMARK 900 BACKBONE REMARK 900 RELATED ID: 2OXK RELATED DB: PDB REMARK 900 SAME PRIMARY SEQUENCE OF SIDE CHAINS ON A DIFFERENT ALPHA/BETA REMARK 900 BACKBONE PATTERN REMARK 900 RELATED ID: 3C3F RELATED DB: PDB REMARK 900 RELATED ID: 3C3H RELATED DB: PDB DBREF 3C3G A 1 33 PDB 3C3G 3C3G 1 33 SEQRES 1 A 33 HMR MET LYS B3Q ILE GLU B3D LYS LEU B3E GLU ILE B3L SEQRES 2 A 33 SER LYS B3L TYR HIS BIL GLU ASN B3E LEU ALA HMR ILE SEQRES 3 A 33 LYS B3K LEU LEU BAL GLU ARG MODRES 3C3G HMR A 1 ARG BETA-HOMOARGININE MODRES 3C3G B3D A 7 ASP 3-AMINOPENTANEDIOIC ACID MODRES 3C3G B3E A 10 GLU (3S)-3-AMINOHEXANEDIOIC ACID MODRES 3C3G B3E A 22 GLU (3S)-3-AMINOHEXANEDIOIC ACID MODRES 3C3G HMR A 25 ARG BETA-HOMOARGININE MODRES 3C3G B3K A 28 LYS (3S)-3,7-DIAMINOHEPTANOIC ACID MODRES 3C3G BAL A 31 ALA BETA-ALANINE HET HMR A 1 20 HET B3Q A 4 12 HET B3D A 7 15 HET B3E A 10 18 HET B3L A 13 22 HET B3L A 16 22 HET BIL A 19 22 HET B3E A 22 18 HET HMR A 25 27 HET B3K A 28 12 HET BAL A 31 10 HET GOL A 34 14 HETNAM HMR BETA-HOMOARGININE HETNAM B3Q (3S)-3,6-DIAMINO-6-OXOHEXANOIC ACID HETNAM B3D 3-AMINOPENTANEDIOIC ACID HETNAM B3E (3S)-3-AMINOHEXANEDIOIC ACID HETNAM B3L (3S)-3-AMINO-5-METHYLHEXANOIC ACID HETNAM BIL (3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID HETNAM B3K (3S)-3,7-DIAMINOHEPTANOIC ACID HETNAM BAL BETA-ALANINE HETNAM GOL GLYCEROL HETSYN B3Q (S)-BETA-3-HOMOGLUTAMINE HETSYN B3D BETA-HOMOASPARTATE HETSYN B3L (S)-BETA-3-HOMOLEUCINE HETSYN BIL (R,S)-BETA-3-HOMOISOLEUCINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 HMR 2(C7 H16 N4 O2) FORMUL 1 B3Q C6 H12 N2 O3 FORMUL 1 B3D C5 H9 N O4 FORMUL 1 B3E 2(C6 H11 N O4) FORMUL 1 B3L 2(C7 H15 N O2) FORMUL 1 BIL C7 H15 N O2 FORMUL 1 B3K C7 H16 N2 O2 FORMUL 1 BAL C3 H7 N O2 FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *49(H2 O) HELIX 1 1 HMR A 1 BAL A 31 1 31 LINK C HMR A 1 N MET A 2 1555 1555 1.33 LINK C LYS A 3 N B3Q A 4 1555 1555 1.31 LINK C B3Q A 4 N ILE A 5 1555 1555 1.33 LINK C GLU A 6 N B3D A 7 1555 1555 1.34 LINK C B3D A 7 N LYS A 8 1555 1555 1.34 LINK C LEU A 9 N B3E A 10 1555 1555 1.33 LINK C B3E A 10 N GLU A 11 1555 1555 1.32 LINK C ILE A 12 N B3L A 13 1555 1555 1.32 LINK C B3L A 13 N SER A 14 1555 1555 1.33 LINK C LYS A 15 N B3L A 16 1555 1555 1.32 LINK C B3L A 16 N TYR A 17 1555 1555 1.33 LINK C HIS A 18 N BIL A 19 1555 1555 1.33 LINK C BIL A 19 N GLU A 20 1555 1555 1.31 LINK C ASN A 21 N B3E A 22 1555 1555 1.31 LINK C B3E A 22 N LEU A 23 1555 1555 1.31 LINK C ALA A 24 N HMR A 25 1555 1555 1.31 LINK C HMR A 25 N ILE A 26 1555 1555 1.32 LINK C LYS A 27 N B3K A 28 1555 1555 1.33 LINK C B3K A 28 N LEU A 29 1555 1555 1.33 LINK C LEU A 30 N BAL A 31 1555 1555 1.35 SITE 1 AC8 7 SER A 14 LYS A 15 HIS A 18 HOH A 41 SITE 2 AC8 7 HOH A 45 HOH A 64 HOH A 83 CRYST1 38.414 38.414 46.494 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021508 0.00000 CONECT 1 2 CONECT 2 1 3 9 11 CONECT 3 2 4 12 13 CONECT 4 3 5 14 15 CONECT 5 4 6 16 17 CONECT 6 5 18 CONECT 7 8 9 21 CONECT 8 7 CONECT 9 2 7 19 20 CONECT 11 2 CONECT 12 3 CONECT 13 3 CONECT 14 4 CONECT 15 4 CONECT 16 5 CONECT 17 5 CONECT 18 6 CONECT 19 9 CONECT 20 9 CONECT 21 7 CONECT 40 47 CONECT 47 40 48 57 CONECT 48 47 49 50 53 CONECT 49 48 54 55 CONECT 50 48 51 56 58 CONECT 51 50 52 59 CONECT 52 51 CONECT 53 48 CONECT 54 49 CONECT 55 49 CONECT 56 50 CONECT 57 47 CONECT 58 50 CONECT 59 51 CONECT 80 92 CONECT 87 88 CONECT 88 87 89 90 CONECT 89 88 CONECT 90 88 91 96 97 CONECT 91 90 92 93 98 CONECT 92 80 91 99 CONECT 93 91 94 100 101 CONECT 94 93 95 102 CONECT 95 94 CONECT 96 90 CONECT 97 90 CONECT 98 91 CONECT 99 92 CONECT 100 93 CONECT 101 93 CONECT 102 94 CONECT 126 143 CONECT 143 126 144 153 CONECT 144 143 145 150 154 CONECT 145 144 146 155 156 CONECT 146 145 147 157 158 CONECT 147 146 148 149 CONECT 148 147 CONECT 149 147 CONECT 150 144 151 159 160 CONECT 151 150 152 161 CONECT 152 151 CONECT 153 143 CONECT 154 144 CONECT 155 145 CONECT 156 145 CONECT 157 146 CONECT 158 146 CONECT 159 150 CONECT 160 150 CONECT 161 151 CONECT 178 199 CONECT 195 196 CONECT 196 195 197 217 CONECT 197 196 198 204 205 CONECT 198 197 199 200 206 CONECT 199 178 198 207 CONECT 200 198 201 208 209 CONECT 201 200 202 203 210 CONECT 202 201 211 212 213 CONECT 203 201 214 215 216 CONECT 204 197 CONECT 205 197 CONECT 206 198 CONECT 207 199 CONECT 208 200 CONECT 209 200 CONECT 210 201 CONECT 211 202 CONECT 212 202 CONECT 213 202 CONECT 214 203 CONECT 215 203 CONECT 216 203 CONECT 217 196 CONECT 237 261 CONECT 257 258 CONECT 258 257 259 279 CONECT 259 258 260 266 267 CONECT 260 259 261 262 268 CONECT 261 237 260 269 CONECT 262 260 263 270 271 CONECT 263 262 264 265 272 CONECT 264 263 273 274 275 CONECT 265 263 276 277 278 CONECT 266 259 CONECT 267 259 CONECT 268 260 CONECT 269 261 CONECT 270 262 CONECT 271 262 CONECT 272 263 CONECT 273 264 CONECT 274 264 CONECT 275 264 CONECT 276 265 CONECT 277 265 CONECT 278 265 CONECT 279 258 CONECT 302 322 CONECT 318 319 320 340 CONECT 319 318 CONECT 320 318 321 327 328 CONECT 321 320 322 323 329 CONECT 322 302 321 330 CONECT 323 321 324 325 331 CONECT 324 323 332 333 334 CONECT 325 323 326 335 336 CONECT 326 325 337 338 339 CONECT 327 320 CONECT 328 320 CONECT 329 321 CONECT 330 322 CONECT 331 323 CONECT 332 324 CONECT 333 324 CONECT 334 324 CONECT 335 325 CONECT 336 325 CONECT 337 326 CONECT 338 326 CONECT 339 326 CONECT 340 318 CONECT 357 369 CONECT 369 357 370 379 CONECT 370 369 371 376 380 CONECT 371 370 372 381 382 CONECT 372 371 373 383 384 CONECT 373 372 374 375 CONECT 374 373 CONECT 375 373 CONECT 376 370 377 385 386 CONECT 377 376 378 387 CONECT 378 377 CONECT 379 369 CONECT 380 370 CONECT 381 371 CONECT 382 371 CONECT 383 372 CONECT 384 372 CONECT 385 376 CONECT 386 376 CONECT 387 377 CONECT 408 416 CONECT 416 408 417 428 CONECT 417 416 418 427 429 CONECT 418 417 419 430 431 CONECT 419 418 420 432 433 CONECT 420 419 421 434 435 CONECT 421 420 422 436 CONECT 422 421 423 424 CONECT 423 422 437 CONECT 424 422 438 439 CONECT 425 426 427 443 CONECT 426 425 CONECT 427 417 425 440 441 CONECT 428 416 CONECT 429 417 CONECT 430 418 CONECT 431 418 CONECT 432 419 CONECT 433 419 CONECT 434 420 CONECT 435 420 CONECT 436 421 CONECT 437 423 CONECT 438 424 CONECT 439 424 CONECT 440 427 CONECT 441 427 CONECT 443 425 CONECT 464 484 CONECT 484 464 485 490 CONECT 485 484 486 487 491 CONECT 486 485 492 493 CONECT 487 485 488 494 495 CONECT 488 487 489 496 CONECT 489 488 CONECT 490 484 CONECT 491 485 CONECT 492 486 CONECT 493 486 CONECT 494 487 CONECT 495 487 CONECT 496 488 CONECT 517 534 CONECT 534 517 535 539 CONECT 535 534 536 540 541 CONECT 536 535 537 542 543 CONECT 537 536 538 CONECT 538 537 CONECT 539 534 CONECT 540 535 CONECT 541 535 CONECT 542 536 CONECT 543 536 CONECT 545 546 547 551 552 CONECT 546 545 553 CONECT 547 545 548 549 554 CONECT 548 547 555 CONECT 549 547 550 556 557 CONECT 550 549 558 CONECT 551 545 CONECT 552 545 CONECT 553 546 CONECT 554 547 CONECT 555 548 CONECT 556 549 CONECT 557 549 CONECT 558 550 MASTER 401 0 12 1 0 0 2 6 309 1 230 3 END