HEADER ALLERGEN 28-JAN-08 3C3V TITLE CRYSTAL STRUCTURE OF PEANUT MAJOR ALLERGEN ARA H 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARACHIN ARAH3 ISOFORM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-530 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARACHIS HYPOGAEA; SOURCE 3 ORGANISM_COMMON: PEANUT; SOURCE 4 ORGANISM_TAXID: 3818; SOURCE 5 OTHER_DETAILS: SEEDS KEYWDS PEANUT ALLERGEN, ALLERGY, ARA H 3, GLYCININ, ALLERGEN EXPDTA X-RAY DIFFRACTION AUTHOR T.JIN,Y.ZHANG REVDAT 3 25-OCT-17 3C3V 1 REMARK REVDAT 2 23-JUN-09 3C3V 1 JRNL REVDAT 1 24-FEB-09 3C3V 0 JRNL AUTH T.JIN,F.GUO,Y.W.CHEN,A.HOWARD,Y.Z.ZHANG JRNL TITL CRYSTAL STRUCTURE OF ARA H 3, A MAJOR ALLERGEN IN PEANUT. JRNL REF MOL.IMMUNOL. V. 46 1796 2009 JRNL REFN ISSN 0161-5890 JRNL PMID 19251323 JRNL DOI 10.1016/J.MOLIMM.2009.01.023 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 52096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2741 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3175 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.409 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3366 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4596 ; 2.104 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 6.550 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;38.315 ;24.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 540 ;18.474 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2737 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1466 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2234 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 225 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 193 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2041 ; 2.194 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3306 ; 3.263 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1354 ; 4.489 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1274 ; 6.593 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3395 ; 3.145 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 286 ;11.021 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3277 ;10.805 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55487 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE, 8% REMARK 280 PEG 4000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.46200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.46200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.46200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.46200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 43.46200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.46200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: X,Y,Z ; -Y,X-Y,Z ; REMARK 300 -X,Y-X,-Z ; -Y,-X,1/2-Z; AND Y-X,Y,1/2-Z; REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 53140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -266.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 72.46450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -125.51220 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 144.92900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 43.46200 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 144.92900 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 43.46200 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 72.46450 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 -125.51220 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 43.46200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 72.46450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -125.51220 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 144.92900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 72.46450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -125.51220 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.46200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 853 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 857 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 870 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 118 REMARK 465 GLY A 119 REMARK 465 ARG A 120 REMARK 465 ARG A 121 REMARK 465 TYR A 122 REMARK 465 GLN A 123 REMARK 465 SER A 124 REMARK 465 GLN A 125 REMARK 465 ARG A 126 REMARK 465 PRO A 127 REMARK 465 PRO A 128 REMARK 465 ARG A 129 REMARK 465 ARG A 130 REMARK 465 LEU A 131 REMARK 465 GLN A 132 REMARK 465 GLU A 133 REMARK 465 GLU A 134 REMARK 465 ASP A 135 REMARK 465 GLN A 136 REMARK 465 SER A 137 REMARK 465 GLN A 212 REMARK 465 SER A 213 REMARK 465 ARG A 214 REMARK 465 GLN A 215 REMARK 465 SER A 216 REMARK 465 ARG A 217 REMARK 465 ARG A 218 REMARK 465 ARG A 219 REMARK 465 SER A 220 REMARK 465 LEU A 221 REMARK 465 PRO A 222 REMARK 465 TYR A 223 REMARK 465 SER A 224 REMARK 465 PRO A 225 REMARK 465 TYR A 226 REMARK 465 SER A 227 REMARK 465 PRO A 228 REMARK 465 GLN A 229 REMARK 465 SER A 230 REMARK 465 GLN A 231 REMARK 465 PRO A 232 REMARK 465 ARG A 233 REMARK 465 GLN A 234 REMARK 465 GLU A 235 REMARK 465 GLU A 236 REMARK 465 ARG A 237 REMARK 465 GLU A 238 REMARK 465 PHE A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ARG A 242 REMARK 465 GLY A 243 REMARK 465 GLN A 244 REMARK 465 HIS A 245 REMARK 465 SER A 246 REMARK 465 ARG A 247 REMARK 465 ARG A 248 REMARK 465 GLU A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 GLY A 252 REMARK 465 GLN A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 GLU A 256 REMARK 465 HIS A 257 REMARK 465 GLU A 258 REMARK 465 GLY A 259 REMARK 465 ASP A 311 REMARK 465 ARG A 312 REMARK 465 LYS A 313 REMARK 465 ARG A 314 REMARK 465 GLY A 315 REMARK 465 ALA A 316 REMARK 465 ASP A 317 REMARK 465 GLU A 318 REMARK 465 GLU A 319 REMARK 465 GLU A 320 REMARK 465 GLU A 321 REMARK 465 TYR A 322 REMARK 465 ASP A 323 REMARK 465 GLU A 324 REMARK 465 ASP A 325 REMARK 465 GLU A 326 REMARK 465 TYR A 327 REMARK 465 GLU A 328 REMARK 465 TYR A 329 REMARK 465 ASP A 330 REMARK 465 GLU A 331 REMARK 465 GLU A 332 REMARK 465 ASP A 333 REMARK 465 ARG A 334 REMARK 465 ARG A 335 REMARK 465 ARG A 336 REMARK 465 GLY A 337 REMARK 465 ARG A 338 REMARK 465 GLY A 339 REMARK 465 SER A 340 REMARK 465 ARG A 341 REMARK 465 GLY A 342 REMARK 465 SER A 343 REMARK 465 GLY A 344 REMARK 465 ASN A 345 REMARK 465 SER A 522 REMARK 465 GLN A 523 REMARK 465 GLN A 524 REMARK 465 SER A 525 REMARK 465 PRO A 526 REMARK 465 ARG A 527 REMARK 465 ALA A 528 REMARK 465 VAL A 529 REMARK 465 ALA A 530 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 201 CG OD1 ND2 REMARK 470 ASP A 278 CG OD1 OD2 REMARK 470 ASN A 363 CG OD1 ND2 REMARK 470 ASP A 462 OD1 OD2 REMARK 470 GLU A 504 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 846 O HOH A 868 2545 2.09 REMARK 500 O HOH A 867 O HOH A 869 9555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 93 CE1 PHE A 93 CZ 0.122 REMARK 500 GLU A 348 CD GLU A 348 OE1 0.074 REMARK 500 PHE A 453 CZ PHE A 453 CE2 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 LEU A 166 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 435 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 435 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 141 -73.37 -82.53 REMARK 500 ASN A 201 50.22 -157.77 REMARK 500 ASN A 290 35.04 -94.99 REMARK 500 SER A 309 137.11 -175.10 REMARK 500 THR A 350 -105.42 -113.11 REMARK 500 ALA A 373 -44.49 -138.40 REMARK 500 ASP A 438 88.88 -152.09 REMARK 500 GLU A 439 -177.70 -170.70 REMARK 500 ASN A 452 -16.79 72.66 REMARK 500 THR A 471 41.99 -89.93 REMARK 500 ASN A 484 29.34 48.24 REMARK 500 PHE A 517 -63.45 76.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHORS THE CORRECT REMARK 999 RESIDUE AT THIS POSITION IS HISTIDINE DBREF 3C3V A 21 530 UNP B5TYU1 B5TYU1_ARAHY 21 530 SEQADV 3C3V HIS A 257 UNP B5TYU1 ASN 257 SEE REMARK 999 SEQRES 1 A 510 ILE SER PHE ARG GLN GLN PRO GLU GLU ASN ALA CYS GLN SEQRES 2 A 510 PHE GLN ARG LEU ASN ALA GLN ARG PRO ASP ASN ARG ILE SEQRES 3 A 510 GLU SER GLU GLY GLY TYR ILE GLU THR TRP ASN PRO ASN SEQRES 4 A 510 ASN GLN GLU PHE GLU CYS ALA GLY VAL ALA LEU SER ARG SEQRES 5 A 510 LEU VAL LEU ARG ARG ASN ALA LEU ARG ARG PRO PHE TYR SEQRES 6 A 510 SER ASN ALA PRO GLN GLU ILE PHE ILE GLN GLN GLY ARG SEQRES 7 A 510 GLY TYR PHE GLY LEU ILE PHE PRO GLY CYS PRO SER THR SEQRES 8 A 510 TYR GLU GLU PRO ALA GLN GLN GLY ARG ARG TYR GLN SER SEQRES 9 A 510 GLN ARG PRO PRO ARG ARG LEU GLN GLU GLU ASP GLN SER SEQRES 10 A 510 GLN GLN GLN GLN ASP SER HIS GLN LYS VAL HIS ARG PHE SEQRES 11 A 510 ASN GLU GLY ASP LEU ILE ALA VAL PRO THR GLY VAL ALA SEQRES 12 A 510 PHE TRP LEU TYR ASN ASP HIS ASP THR ASP VAL VAL ALA SEQRES 13 A 510 VAL SER LEU THR ASP THR ASN ASN ASN ASP ASN GLN LEU SEQRES 14 A 510 ASP GLN PHE PRO ARG ARG PHE ASN LEU ALA GLY ASN HIS SEQRES 15 A 510 GLU GLN GLU PHE LEU ARG TYR GLN GLN GLN SER ARG GLN SEQRES 16 A 510 SER ARG ARG ARG SER LEU PRO TYR SER PRO TYR SER PRO SEQRES 17 A 510 GLN SER GLN PRO ARG GLN GLU GLU ARG GLU PHE SER PRO SEQRES 18 A 510 ARG GLY GLN HIS SER ARG ARG GLU ARG ALA GLY GLN GLU SEQRES 19 A 510 GLU GLU HIS GLU GLY GLY ASN ILE PHE SER GLY PHE THR SEQRES 20 A 510 PRO GLU PHE LEU ALA GLN ALA PHE GLN VAL ASP ASP ARG SEQRES 21 A 510 GLN ILE VAL GLN ASN LEU ARG GLY GLU ASN GLU SER GLU SEQRES 22 A 510 GLU GLN GLY ALA ILE VAL THR VAL ARG GLY GLY LEU ARG SEQRES 23 A 510 ILE LEU SER PRO ASP ARG LYS ARG GLY ALA ASP GLU GLU SEQRES 24 A 510 GLU GLU TYR ASP GLU ASP GLU TYR GLU TYR ASP GLU GLU SEQRES 25 A 510 ASP ARG ARG ARG GLY ARG GLY SER ARG GLY SER GLY ASN SEQRES 26 A 510 GLY ILE GLU GLU THR ILE CYS THR ALA THR VAL LYS LYS SEQRES 27 A 510 ASN ILE GLY ARG ASN ARG SER PRO ASP ILE TYR ASN PRO SEQRES 28 A 510 GLN ALA GLY SER LEU LYS THR ALA ASN GLU LEU ASN LEU SEQRES 29 A 510 LEU ILE LEU ARG TRP LEU GLY LEU SER ALA GLU TYR GLY SEQRES 30 A 510 ASN LEU TYR ARG ASN ALA LEU PHE VAL PRO HIS TYR ASN SEQRES 31 A 510 THR ASN ALA HIS SER ILE ILE TYR ALA LEU ARG GLY ARG SEQRES 32 A 510 ALA HIS VAL GLN VAL VAL ASP SER ASN GLY ASN ARG VAL SEQRES 33 A 510 TYR ASP GLU GLU LEU GLN GLU GLY HIS VAL LEU VAL VAL SEQRES 34 A 510 PRO GLN ASN PHE ALA VAL ALA GLY LYS SER GLN SER ASP SEQRES 35 A 510 ASN PHE GLU TYR VAL ALA PHE LYS THR ASP SER ARG PRO SEQRES 36 A 510 SER ILE ALA ASN LEU ALA GLY GLU ASN SER VAL ILE ASP SEQRES 37 A 510 ASN LEU PRO GLU GLU VAL VAL ALA ASN SER TYR GLY LEU SEQRES 38 A 510 PRO ARG GLU GLN ALA ARG GLN LEU LYS ASN ASN ASN PRO SEQRES 39 A 510 PHE LYS PHE PHE VAL PRO PRO SER GLN GLN SER PRO ARG SEQRES 40 A 510 ALA VAL ALA HET NA A 1 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *285(H2 O) HELIX 1 1 ASN A 60 GLY A 67 1 8 HELIX 2 2 PHE A 206 GLN A 210 5 5 HELIX 3 3 ILE A 262 PHE A 266 5 5 HELIX 4 4 THR A 267 GLN A 276 1 10 HELIX 5 5 ASP A 279 ARG A 287 1 9 HELIX 6 6 THR A 350 ALA A 354 5 5 HELIX 7 7 ILE A 386 GLY A 391 1 6 HELIX 8 8 PRO A 491 GLY A 500 1 10 HELIX 9 9 PRO A 502 ASN A 512 1 11 SHEET 1 A 7 ASN A 44 SER A 48 0 SHEET 2 A 7 GLY A 51 THR A 55 -1 O ILE A 53 N ILE A 46 SHEET 3 A 7 ALA A 69 LEU A 75 -1 O VAL A 74 N TYR A 52 SHEET 4 A 7 VAL A 174 THR A 180 -1 O THR A 180 N ALA A 69 SHEET 5 A 7 GLN A 90 GLN A 96 -1 N PHE A 93 O VAL A 177 SHEET 6 A 7 ASP A 154 VAL A 158 -1 O ILE A 156 N ILE A 92 SHEET 7 A 7 LYS A 357 ASN A 359 -1 O LYS A 358 N LEU A 155 SHEET 1 B 5 HIS A 148 PHE A 150 0 SHEET 2 B 5 GLY A 99 ILE A 104 -1 N PHE A 101 O HIS A 148 SHEET 3 B 5 ALA A 163 ASN A 168 -1 O TYR A 167 N TYR A 100 SHEET 4 B 5 ALA A 79 TYR A 85 -1 N ARG A 81 O LEU A 166 SHEET 5 B 5 PHE A 196 ASN A 197 -1 O PHE A 196 N TYR A 85 SHEET 1 C 5 HIS A 148 PHE A 150 0 SHEET 2 C 5 GLY A 99 ILE A 104 -1 N PHE A 101 O HIS A 148 SHEET 3 C 5 ALA A 163 ASN A 168 -1 O TYR A 167 N TYR A 100 SHEET 4 C 5 ALA A 79 TYR A 85 -1 N ARG A 81 O LEU A 166 SHEET 5 C 5 ILE A 298 THR A 300 -1 O VAL A 299 N LEU A 80 SHEET 1 D 2 TYR A 112 PRO A 115 0 SHEET 2 D 2 GLN A 140 HIS A 144 -1 O GLN A 141 N GLU A 114 SHEET 1 E 6 ILE A 368 ASN A 370 0 SHEET 2 E 6 GLY A 374 ALA A 379 -1 O GLY A 374 N ASN A 370 SHEET 3 E 6 SER A 393 TYR A 400 -1 O ALA A 394 N ALA A 379 SHEET 4 E 6 ASN A 463 LYS A 470 -1 O PHE A 464 N LEU A 399 SHEET 5 E 6 SER A 415 ARG A 421 -1 N TYR A 418 O VAL A 467 SHEET 6 E 6 VAL A 446 VAL A 449 -1 O LEU A 447 N ILE A 417 SHEET 1 F 5 ARG A 435 GLN A 442 0 SHEET 2 F 5 ARG A 423 VAL A 429 -1 N ALA A 424 O LEU A 441 SHEET 3 F 5 ALA A 454 SER A 459 -1 O LYS A 458 N HIS A 425 SHEET 4 F 5 LEU A 404 ASN A 410 -1 N PHE A 405 O GLY A 457 SHEET 5 F 5 ILE A 477 ASN A 479 -1 O ALA A 478 N TYR A 409 SHEET 1 G 5 ARG A 435 GLN A 442 0 SHEET 2 G 5 ARG A 423 VAL A 429 -1 N ALA A 424 O LEU A 441 SHEET 3 G 5 ALA A 454 SER A 459 -1 O LYS A 458 N HIS A 425 SHEET 4 G 5 LEU A 404 ASN A 410 -1 N PHE A 405 O GLY A 457 SHEET 5 G 5 PHE A 518 VAL A 519 -1 O VAL A 519 N LEU A 404 SSBOND 1 CYS A 32 CYS A 65 1555 1555 2.16 SSBOND 2 CYS A 108 CYS A 352 1555 1555 2.10 SITE 1 AC1 3 ARG A 194 SER A 431 PHE A 453 CRYST1 144.929 144.929 86.924 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006900 0.003984 0.000000 0.00000 SCALE2 0.000000 0.007967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011504 0.00000