HEADER TRANSCRIPTION 28-JAN-08 3C3W TITLE CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC RESPONSE TITLE 2 REGULATOR DOSR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROBABLY LUXR/UHPA-FAMILY, DEVR, DNA-BINDING RESPONSE COMPND 5 REGULATOR, LUXR FAMILY; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: DEVR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21-D(+) KEYWDS RESPONSE REGULATOR, TWO-COMPONENT REGULATORY SYSTEM, DNA-BINDING KEYWDS 2 PROTEIN, TUBERCULOSIS, TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR G.WISEDCHAISRI,M.WU,D.R.SHERMAN,W.G.J.HOL REVDAT 5 03-APR-24 3C3W 1 REMARK REVDAT 4 21-FEB-24 3C3W 1 REMARK SEQADV REVDAT 3 13-JUL-11 3C3W 1 VERSN REVDAT 2 24-FEB-09 3C3W 1 VERSN REVDAT 1 22-APR-08 3C3W 0 JRNL AUTH G.WISEDCHAISRI,M.WU,D.R.SHERMAN,W.G.HOL JRNL TITL CRYSTAL STRUCTURES OF THE RESPONSE REGULATOR DOSR FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS SUGGEST A HELIX REARRANGEMENT JRNL TITL 3 MECHANISM FOR PHOSPHORYLATION ACTIVATION JRNL REF J.MOL.BIOL. V. 378 227 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18353359 JRNL DOI 10.1016/J.JMB.2008.02.029 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 21670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1172 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1091 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.33000 REMARK 3 B22 (A**2) : -3.24000 REMARK 3 B33 (A**2) : -3.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.263 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3176 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4287 ; 1.267 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 421 ; 4.953 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;32.738 ;23.175 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 584 ;18.099 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2314 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2086 ; 1.158 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3312 ; 1.938 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1090 ; 2.428 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 974 ; 3.584 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 211 2 REMARK 3 2 B 1 B 210 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 839 ; 0.09 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 B (A): 716 ; 0.45 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 839 ; 0.50 ; 2.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 716 ; 0.64 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3719 36.2834 45.2048 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: -0.0356 REMARK 3 T33: -0.0416 T12: 0.0462 REMARK 3 T13: 0.0452 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.3249 L22: 2.8088 REMARK 3 L33: 3.3304 L12: -0.4680 REMARK 3 L13: -0.1178 L23: -0.8466 REMARK 3 S TENSOR REMARK 3 S11: 0.1203 S12: 0.1389 S13: 0.1123 REMARK 3 S21: -0.4303 S22: -0.1224 S23: -0.0410 REMARK 3 S31: 0.0216 S32: 0.0661 S33: 0.0021 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4935 37.8864 78.2578 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.0980 REMARK 3 T33: -0.0934 T12: 0.0392 REMARK 3 T13: 0.1932 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.0197 L22: 0.0648 REMARK 3 L33: 5.9242 L12: -0.1628 REMARK 3 L13: 0.2023 L23: -0.5100 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.1850 S13: 0.0124 REMARK 3 S21: -0.0710 S22: 0.1005 S23: 0.4940 REMARK 3 S31: -0.2871 S32: 0.7186 S33: -0.1550 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7382 44.2158 47.9398 REMARK 3 T TENSOR REMARK 3 T11: 0.0111 T22: 0.0504 REMARK 3 T33: 0.0277 T12: 0.0177 REMARK 3 T13: 0.0528 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 3.7148 L22: 8.1540 REMARK 3 L33: 12.7634 L12: -2.8769 REMARK 3 L13: 4.0924 L23: -8.1181 REMARK 3 S TENSOR REMARK 3 S11: 0.1624 S12: 0.1731 S13: 0.0018 REMARK 3 S21: 0.3365 S22: 0.0422 S23: 0.1383 REMARK 3 S31: -0.1684 S32: 0.0892 S33: -0.2046 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0930 45.2380 48.7466 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1276 REMARK 3 T33: 0.0211 T12: 0.0077 REMARK 3 T13: -0.1159 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.6756 L22: 2.8311 REMARK 3 L33: 4.1443 L12: 0.4300 REMARK 3 L13: -1.6087 L23: -0.5444 REMARK 3 S TENSOR REMARK 3 S11: -0.1389 S12: -0.4419 S13: -0.0752 REMARK 3 S21: 0.5558 S22: 0.0198 S23: -0.4192 REMARK 3 S31: -0.0637 S32: 0.7678 S33: 0.1191 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0592 54.9651 45.0958 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: -0.0349 REMARK 3 T33: -0.0395 T12: 0.0501 REMARK 3 T13: -0.0628 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.2382 L22: 8.1358 REMARK 3 L33: 6.3969 L12: 1.2995 REMARK 3 L13: -0.8578 L23: -3.2421 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: 0.0414 S13: 0.1084 REMARK 3 S21: -0.4543 S22: 0.3308 S23: 0.4981 REMARK 3 S31: -0.6405 S32: -0.2211 S33: -0.3067 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1533 38.8416 65.5273 REMARK 3 T TENSOR REMARK 3 T11: 0.2669 T22: 0.0615 REMARK 3 T33: -0.0511 T12: 0.0016 REMARK 3 T13: -0.0024 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 4.5391 L22: 2.6763 REMARK 3 L33: 10.2063 L12: 3.4509 REMARK 3 L13: -0.5346 L23: 0.3252 REMARK 3 S TENSOR REMARK 3 S11: 0.2535 S12: -0.4145 S13: 0.5691 REMARK 3 S21: 0.1519 S22: -0.2443 S23: -0.4205 REMARK 3 S31: -0.7256 S32: -0.0241 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2792 58.5105 38.9910 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: -0.0135 REMARK 3 T33: -0.0514 T12: -0.0639 REMARK 3 T13: 0.0447 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.8561 L22: 3.2944 REMARK 3 L33: 3.6866 L12: 0.5892 REMARK 3 L13: -0.9377 L23: -1.2712 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.1213 S13: -0.0592 REMARK 3 S21: 0.6007 S22: -0.0906 S23: 0.0148 REMARK 3 S31: 0.0239 S32: 0.0448 S33: 0.0868 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4856 59.6393 5.5954 REMARK 3 T TENSOR REMARK 3 T11: 0.5967 T22: -0.0196 REMARK 3 T33: -0.1063 T12: 0.0447 REMARK 3 T13: 0.0411 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 1.6785 L22: 2.7752 REMARK 3 L33: 9.4412 L12: -0.2722 REMARK 3 L13: -3.7608 L23: -0.4902 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: -0.4289 S13: 0.2344 REMARK 3 S21: -1.0799 S22: 0.0342 S23: 0.0677 REMARK 3 S31: 1.0799 S32: 0.7568 S33: 0.0417 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 98 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7821 54.0647 31.9682 REMARK 3 T TENSOR REMARK 3 T11: 0.0240 T22: 0.0838 REMARK 3 T33: -0.0106 T12: -0.0012 REMARK 3 T13: 0.0255 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 4.1558 L22: 12.0566 REMARK 3 L33: 12.9740 L12: 5.4616 REMARK 3 L13: -4.4580 L23: -10.9713 REMARK 3 S TENSOR REMARK 3 S11: 0.1915 S12: -0.3241 S13: -0.1734 REMARK 3 S21: -0.1175 S22: -0.4861 S23: -0.0865 REMARK 3 S31: 0.0587 S32: 0.5756 S33: 0.2946 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 122 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0310 53.6261 35.5014 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.0622 REMARK 3 T33: 0.1345 T12: -0.0927 REMARK 3 T13: 0.0434 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 1.8939 L22: 2.8400 REMARK 3 L33: 4.2965 L12: -0.3560 REMARK 3 L13: 1.1303 L23: -0.3639 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: 0.2416 S13: 0.0404 REMARK 3 S21: -0.0236 S22: 0.0571 S23: -0.7075 REMARK 3 S31: -0.2597 S32: 0.7357 S33: 0.0339 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 167 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2917 44.5765 34.2351 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: -0.0120 REMARK 3 T33: -0.0189 T12: -0.0870 REMARK 3 T13: 0.0745 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.3947 L22: 6.8141 REMARK 3 L33: 5.9399 L12: -0.8265 REMARK 3 L13: 0.5364 L23: -2.4174 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: -0.0944 S13: -0.0985 REMARK 3 S21: 0.2606 S22: 0.3116 S23: 0.5548 REMARK 3 S31: 0.4020 S32: -0.3896 S33: -0.2422 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 196 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0437 60.0047 15.6096 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.0176 REMARK 3 T33: -0.0093 T12: -0.0331 REMARK 3 T13: 0.0794 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 2.2166 L22: 10.6889 REMARK 3 L33: 10.3180 L12: -1.6320 REMARK 3 L13: 1.8654 L23: 0.2700 REMARK 3 S TENSOR REMARK 3 S11: 0.3253 S12: 0.2143 S13: -0.2252 REMARK 3 S21: -0.0841 S22: -0.1577 S23: 0.1347 REMARK 3 S31: 0.6671 S32: 0.3019 S33: -0.1676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 4.390 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39700 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: INITIAL MODEL FROM MAD EXPERIMENT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITRES OF PROTEIN, 2 REMARK 280 MICROLITRES OF 10% GLYCEROL, 1 MICROLITRES OF MANGANESE CHLORIDE, REMARK 280 1 MICROLITRES OF PRECIPITANT (0.5M LITHIUM SULFATE AND 0.1M REMARK 280 CITRIC ACID PH 3.0), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.04000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 212 REMARK 465 PRO A 213 REMARK 465 GLY A 214 REMARK 465 ASP A 215 REMARK 465 GLY A 216 REMARK 465 PRO A 217 REMARK 465 LEU A 218 REMARK 465 GLU A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 ARG B 211 REMARK 465 PRO B 212 REMARK 465 PRO B 213 REMARK 465 GLY B 214 REMARK 465 ASP B 215 REMARK 465 GLY B 216 REMARK 465 PRO B 217 REMARK 465 LEU B 218 REMARK 465 GLU B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 127 CG OD1 ND2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 54 O HOH A 229 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU B 53 CB - CG - CD1 ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 209 36.71 -81.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 52 LEU A 53 -147.29 REMARK 500 VAL B 52 LEU B 53 -148.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 226 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZLJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC REMARK 900 RESPONSE REGULATOR DOSR C-TERMINAL DOMAIN REMARK 900 RELATED ID: 1ZLK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC REMARK 900 RESPONSE REGULATOR DOSR C-TERMINAL DOMAIN-DNA COMPLEX DBREF 3C3W A 1 217 UNP P95193 P95193_MYCTU 1 217 DBREF 3C3W B 1 217 UNP P95193 P95193_MYCTU 1 217 SEQADV 3C3W LEU A 218 UNP P95193 EXPRESSION TAG SEQADV 3C3W GLU A 219 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS A 220 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS A 221 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS A 222 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS A 223 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS A 224 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS A 225 UNP P95193 EXPRESSION TAG SEQADV 3C3W LEU B 218 UNP P95193 EXPRESSION TAG SEQADV 3C3W GLU B 219 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS B 220 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS B 221 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS B 222 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS B 223 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS B 224 UNP P95193 EXPRESSION TAG SEQADV 3C3W HIS B 225 UNP P95193 EXPRESSION TAG SEQRES 1 A 225 MET VAL LYS VAL PHE LEU VAL ASP ASP HIS GLU VAL VAL SEQRES 2 A 225 ARG ARG GLY LEU VAL ASP LEU LEU GLY ALA ASP PRO GLU SEQRES 3 A 225 LEU ASP VAL VAL GLY GLU ALA GLY SER VAL ALA GLU ALA SEQRES 4 A 225 MET ALA ARG VAL PRO ALA ALA ARG PRO ASP VAL ALA VAL SEQRES 5 A 225 LEU ASP VAL ARG LEU PRO ASP GLY ASN GLY ILE GLU LEU SEQRES 6 A 225 CYS ARG ASP LEU LEU SER ARG MET PRO ASP LEU ARG CYS SEQRES 7 A 225 LEU ILE LEU THR SER TYR THR SER ASP GLU ALA MET LEU SEQRES 8 A 225 ASP ALA ILE LEU ALA GLY ALA SER GLY TYR VAL VAL LYS SEQRES 9 A 225 ASP ILE LYS GLY MET GLU LEU ALA ARG ALA VAL LYS ASP SEQRES 10 A 225 VAL GLY ALA GLY ARG SER LEU LEU ASP ASN ARG ALA ALA SEQRES 11 A 225 ALA ALA LEU MET ALA LYS LEU ARG GLY ALA ALA GLU LYS SEQRES 12 A 225 GLN ASP PRO LEU SER GLY LEU THR ASP GLN GLU ARG THR SEQRES 13 A 225 LEU LEU GLY LEU LEU SER GLU GLY LEU THR ASN LYS GLN SEQRES 14 A 225 ILE ALA ASP ARG MET PHE LEU ALA GLU LYS THR VAL LYS SEQRES 15 A 225 ASN TYR VAL SER ARG LEU LEU ALA LYS LEU GLY MET GLU SEQRES 16 A 225 ARG ARG THR GLN ALA ALA VAL PHE ALA THR GLU LEU LYS SEQRES 17 A 225 ARG SER ARG PRO PRO GLY ASP GLY PRO LEU GLU HIS HIS SEQRES 18 A 225 HIS HIS HIS HIS SEQRES 1 B 225 MET VAL LYS VAL PHE LEU VAL ASP ASP HIS GLU VAL VAL SEQRES 2 B 225 ARG ARG GLY LEU VAL ASP LEU LEU GLY ALA ASP PRO GLU SEQRES 3 B 225 LEU ASP VAL VAL GLY GLU ALA GLY SER VAL ALA GLU ALA SEQRES 4 B 225 MET ALA ARG VAL PRO ALA ALA ARG PRO ASP VAL ALA VAL SEQRES 5 B 225 LEU ASP VAL ARG LEU PRO ASP GLY ASN GLY ILE GLU LEU SEQRES 6 B 225 CYS ARG ASP LEU LEU SER ARG MET PRO ASP LEU ARG CYS SEQRES 7 B 225 LEU ILE LEU THR SER TYR THR SER ASP GLU ALA MET LEU SEQRES 8 B 225 ASP ALA ILE LEU ALA GLY ALA SER GLY TYR VAL VAL LYS SEQRES 9 B 225 ASP ILE LYS GLY MET GLU LEU ALA ARG ALA VAL LYS ASP SEQRES 10 B 225 VAL GLY ALA GLY ARG SER LEU LEU ASP ASN ARG ALA ALA SEQRES 11 B 225 ALA ALA LEU MET ALA LYS LEU ARG GLY ALA ALA GLU LYS SEQRES 12 B 225 GLN ASP PRO LEU SER GLY LEU THR ASP GLN GLU ARG THR SEQRES 13 B 225 LEU LEU GLY LEU LEU SER GLU GLY LEU THR ASN LYS GLN SEQRES 14 B 225 ILE ALA ASP ARG MET PHE LEU ALA GLU LYS THR VAL LYS SEQRES 15 B 225 ASN TYR VAL SER ARG LEU LEU ALA LYS LEU GLY MET GLU SEQRES 16 B 225 ARG ARG THR GLN ALA ALA VAL PHE ALA THR GLU LEU LYS SEQRES 17 B 225 ARG SER ARG PRO PRO GLY ASP GLY PRO LEU GLU HIS HIS SEQRES 18 B 225 HIS HIS HIS HIS HET SO4 A 226 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *91(H2 O) HELIX 1 1 HIS A 10 ALA A 23 1 14 HELIX 2 2 SER A 35 ARG A 47 1 13 HELIX 3 3 GLY A 62 MET A 73 1 12 HELIX 4 4 THR A 82 TYR A 84 5 3 HELIX 5 5 SER A 86 GLY A 97 1 12 HELIX 6 6 GLY A 100 ARG A 122 1 23 HELIX 7 7 SER A 123 LEU A 125 5 3 HELIX 8 8 ASP A 126 GLN A 144 1 19 HELIX 9 9 THR A 151 GLU A 163 1 13 HELIX 10 10 THR A 166 PHE A 175 1 10 HELIX 11 11 ALA A 177 LEU A 192 1 16 HELIX 12 12 THR A 198 LYS A 208 1 11 HELIX 13 13 HIS B 10 ALA B 23 1 14 HELIX 14 14 SER B 35 ARG B 47 1 13 HELIX 15 15 GLY B 62 MET B 73 1 12 HELIX 16 16 THR B 82 TYR B 84 5 3 HELIX 17 17 SER B 86 GLY B 97 1 12 HELIX 18 18 GLY B 100 ARG B 122 1 23 HELIX 19 19 SER B 123 LEU B 125 5 3 HELIX 20 20 ASP B 126 GLN B 144 1 19 HELIX 21 21 THR B 151 SER B 162 1 12 HELIX 22 22 THR B 166 PHE B 175 1 10 HELIX 23 23 ALA B 177 LEU B 192 1 16 HELIX 24 24 THR B 198 LYS B 208 1 11 SHEET 1 A 4 LEU A 27 ALA A 33 0 SHEET 2 A 4 VAL A 2 VAL A 7 1 N VAL A 4 O ASP A 28 SHEET 3 A 4 VAL A 50 LEU A 53 1 O VAL A 52 N VAL A 7 SHEET 4 A 4 ARG A 77 ILE A 80 1 O LEU A 79 N ALA A 51 SHEET 1 B 2 ARG A 56 LEU A 57 0 SHEET 2 B 2 GLY A 60 ASN A 61 -1 O GLY A 60 N LEU A 57 SHEET 1 C 4 LEU B 27 ALA B 33 0 SHEET 2 C 4 VAL B 2 VAL B 7 1 N VAL B 4 O ASP B 28 SHEET 3 C 4 VAL B 50 LEU B 53 1 O VAL B 52 N VAL B 7 SHEET 4 C 4 ARG B 77 ILE B 80 1 O ARG B 77 N ALA B 51 SHEET 1 D 2 ARG B 56 LEU B 57 0 SHEET 2 D 2 GLY B 60 ASN B 61 -1 O GLY B 60 N LEU B 57 SITE 1 AC1 6 ARG A 67 ARG A 113 ASP A 117 ARG B 67 SITE 2 AC1 6 ARG B 113 ASP B 117 CRYST1 48.107 98.080 53.710 90.00 93.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020787 0.000000 0.001384 0.00000 SCALE2 0.000000 0.010196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018660 0.00000