HEADER TRANSFERASE 29-JAN-08 3C4D OBSLTE 08-AUG-12 3C4D 4FK3 TITLE B-RAF KINASE V600E ONCOGENIC MUTANT IN COMPLEX WITH PLX3203 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: P94, V-RAF MURINE SARCOMA VIRAL ONCOGENE HOMOLOG B1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET29A KEYWDS B-RAF, BRAF, RAF, PROTO-ONCOGENE, SERINE/THREONINE KINASE, V600E, KEYWDS 2 ATP-BINDING, CARDIOMYOPATHY, DISEASE MUTATION, METAL-BINDING, KEYWDS 3 NUCLEOTIDE-BINDING, PHORBOL-ESTER BINDING, PHOSPHOPROTEIN, KEYWDS 4 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.J.ZHANG,W.WANG REVDAT 4 08-AUG-12 3C4D 1 OBSLTE VERSN REVDAT 3 24-FEB-09 3C4D 1 VERSN REVDAT 2 18-MAR-08 3C4D 1 JRNL REVDAT 1 26-FEB-08 3C4D 0 JRNL AUTH J.TSAI,J.T.LEE,W.WANG,J.ZHANG,H.CHO,S.MAMO,R.BREMER, JRNL AUTH 2 S.GILLETTE,J.KONG,N.K.HAASS,K.SPROESSER,L.LI,K.S.SMALLEY, JRNL AUTH 3 D.FONG,Y.L.ZHU,A.MARIMUTHU,H.NGUYEN,B.LAM,J.LIU,I.CHEUNG, JRNL AUTH 4 J.RICE,Y.SUZUKI,C.LUU,C.SETTACHATGUL,R.SHELLOOE,J.CANTWELL, JRNL AUTH 5 S.H.KIM,J.SCHLESSINGER,K.Y.ZHANG,B.L.WEST,B.POWELL,G.HABETS, JRNL AUTH 6 C.ZHANG,P.N.IBRAHIM,P.HIRTH,D.R.ARTIS,M.HERLYN,G.BOLLAG JRNL TITL DISCOVERY OF A SELECTIVE INHIBITOR OF ONCOGENIC B-RAF KINASE JRNL TITL 2 WITH POTENT ANTIMELANOMA ACTIVITY JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 3041 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18287029 JRNL DOI 10.1073/PNAS.0711741105 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.25 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 17043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.44000 REMARK 3 B22 (A**2) : -2.05000 REMARK 3 B33 (A**2) : -3.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 3.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.428 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.884 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.807 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4240 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3857 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5715 ; 1.772 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8994 ; 0.965 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 8.765 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4648 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 855 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1137 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4767 ; 0.228 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2521 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 122 ; 0.205 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2560 ; 0.334 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4135 ; 0.574 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1680 ; 0.896 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1580 ; 1.369 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 448 A 596 REMARK 3 RESIDUE RANGE : A 614 A 722 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3060 39.4840 19.1620 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.1637 REMARK 3 T33: 0.0836 T12: -0.0172 REMARK 3 T13: 0.0455 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.9666 L22: 8.1641 REMARK 3 L33: 2.0262 L12: -0.4908 REMARK 3 L13: 0.1313 L23: -3.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.2054 S12: -0.1251 S13: -0.0483 REMARK 3 S21: -0.8084 S22: -0.1242 S23: -0.1690 REMARK 3 S31: 0.6103 S32: -0.0904 S33: -0.0812 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 448 B 595 REMARK 3 RESIDUE RANGE : B 614 B 722 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4140 61.5360 -5.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.2226 REMARK 3 T33: 0.1114 T12: -0.0387 REMARK 3 T13: 0.1048 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 4.1918 L22: 4.8811 REMARK 3 L33: 5.1231 L12: -2.8287 REMARK 3 L13: 2.5264 L23: -2.9430 REMARK 3 S TENSOR REMARK 3 S11: 0.3331 S12: 0.5314 S13: 0.1572 REMARK 3 S21: -0.9710 S22: -0.4450 S23: -0.1238 REMARK 3 S31: 1.1263 S32: 0.0575 S33: 0.1119 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6630 50.1480 19.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.2704 REMARK 3 T33: 0.3303 T12: -0.1189 REMARK 3 T13: 0.1042 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: -11.8239 L22: 4.6507 REMARK 3 L33: 14.0026 L12: 60.3436 REMARK 3 L13: 106.0860 L23: 4.5197 REMARK 3 S TENSOR REMARK 3 S11: -1.0096 S12: -7.4207 S13: 1.6680 REMARK 3 S21: -1.3419 S22: 0.2567 S23: 1.2361 REMARK 3 S31: 0.8146 S32: -1.3201 S33: 0.7529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB046325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 295.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17596 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12500 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.70600 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BISTRIS AT PH 6.0, 12.5% 2,5- REMARK 280 HEXANEDIOL, AND 12% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.60250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.23650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.70450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.23650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.60250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.70450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 444 REMARK 465 ASP A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 LEU A 597 REMARK 465 ALA A 598 REMARK 465 THR A 599 REMARK 465 VAL A 600 REMARK 465 LYS A 601 REMARK 465 SER A 602 REMARK 465 ARG A 603 REMARK 465 TRP A 604 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 LEU A 613 REMARK 465 GLY A 723 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 SER B 446 REMARK 465 SER B 447 REMARK 465 GLY B 596 REMARK 465 LEU B 597 REMARK 465 ALA B 598 REMARK 465 THR B 599 REMARK 465 VAL B 600 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 GLY B 723 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS B 540 O GLU B 545 2.05 REMARK 500 O TYR A 647 OG1 THR A 651 2.11 REMARK 500 OE2 GLU A 695 O HOH A 60 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 448 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 576 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 594 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 638 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 576 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 594 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 629 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 663 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 702 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 465 -126.35 -126.14 REMARK 500 HIS A 477 47.31 35.76 REMARK 500 ASN A 486 61.57 -62.68 REMARK 500 VAL A 487 126.34 -171.18 REMARK 500 THR A 491 59.93 -116.39 REMARK 500 PRO A 492 95.71 -34.28 REMARK 500 GLN A 493 -45.44 148.48 REMARK 500 ALA A 497 -39.24 -36.34 REMARK 500 MET A 517 -33.05 -148.57 REMARK 500 THR A 521 -22.95 -147.62 REMARK 500 GLN A 524 144.66 74.88 REMARK 500 GLN A 530 154.37 -38.89 REMARK 500 SER A 544 -38.45 -147.17 REMARK 500 ARG A 575 -6.20 93.48 REMARK 500 ASP A 576 56.52 -174.20 REMARK 500 ASN A 588 -41.67 -138.93 REMARK 500 SER A 616 89.15 -67.77 REMARK 500 MET A 627 88.02 51.58 REMARK 500 ASP A 629 127.02 -34.93 REMARK 500 SER A 630 -55.39 72.83 REMARK 500 ASN A 661 96.61 -164.30 REMARK 500 VAL A 681 -16.76 -47.70 REMARK 500 ARG A 682 149.39 66.24 REMARK 500 GLU A 716 -22.32 -179.28 REMARK 500 ALA A 718 -56.11 156.13 REMARK 500 ARG A 719 -29.61 -32.29 REMARK 500 GLU A 720 53.42 -176.81 REMARK 500 ILE B 463 -64.31 -123.07 REMARK 500 SER B 467 32.06 -140.62 REMARK 500 ASN B 486 58.02 -102.54 REMARK 500 THR B 488 -76.27 -67.51 REMARK 500 PRO B 492 91.55 -42.14 REMARK 500 ARG B 509 82.13 -158.71 REMARK 500 LYS B 522 -73.46 -37.15 REMARK 500 GLN B 524 113.91 39.36 REMARK 500 HIS B 542 -62.01 -99.24 REMARK 500 SER B 544 23.95 -146.54 REMARK 500 GLU B 545 -77.46 27.10 REMARK 500 THR B 546 -154.98 54.09 REMARK 500 LYS B 547 154.97 178.67 REMARK 500 ARG B 575 11.02 58.78 REMARK 500 ASP B 576 50.57 -169.48 REMARK 500 LYS B 578 149.12 -177.44 REMARK 500 ASP B 587 -21.48 73.59 REMARK 500 ASN B 588 46.40 -157.37 REMARK 500 SER B 616 46.35 -94.30 REMARK 500 MET B 627 154.01 81.09 REMARK 500 GLN B 628 122.43 138.80 REMARK 500 ASP B 629 144.05 63.86 REMARK 500 TYR B 656 66.00 73.55 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 491 PRO B 492 -142.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 MET B 627 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 325 A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C4C RELATED DB: PDB REMARK 900 B-RAF KINASE IN COMPLEX WITH PLX4720 DBREF 3C4D A 444 721 UNP P15056 BRAF1_HUMAN 444 721 DBREF 3C4D B 444 721 UNP P15056 BRAF1_HUMAN 444 721 SEQADV 3C4D ALA A 543 UNP P15056 ILE 543 ENGINEERED SEQADV 3C4D SER A 544 UNP P15056 ILE 544 ENGINEERED SEQADV 3C4D LYS A 551 UNP P15056 ILE 551 ENGINEERED SEQADV 3C4D ARG A 562 UNP P15056 GLN 562 ENGINEERED SEQADV 3C4D ASN A 588 UNP P15056 LEU 588 ENGINEERED SEQADV 3C4D SER A 630 UNP P15056 LYS 630 ENGINEERED SEQADV 3C4D GLU A 667 UNP P15056 PHE 667 ENGINEERED SEQADV 3C4D SER A 673 UNP P15056 TYR 673 ENGINEERED SEQADV 3C4D ARG A 688 UNP P15056 ALA 688 ENGINEERED SEQADV 3C4D SER A 706 UNP P15056 LEU 706 ENGINEERED SEQADV 3C4D ARG A 709 UNP P15056 GLN 709 ENGINEERED SEQADV 3C4D GLU A 713 UNP P15056 SER 713 ENGINEERED SEQADV 3C4D GLU A 716 UNP P15056 LEU 716 ENGINEERED SEQADV 3C4D GLU A 720 UNP P15056 SER 720 ENGINEERED SEQADV 3C4D SER A 722 UNP P15056 EXPRESSION TAG SEQADV 3C4D GLY A 723 UNP P15056 EXPRESSION TAG SEQADV 3C4D ALA B 543 UNP P15056 ILE 543 ENGINEERED SEQADV 3C4D SER B 544 UNP P15056 ILE 544 ENGINEERED SEQADV 3C4D LYS B 551 UNP P15056 ILE 551 ENGINEERED SEQADV 3C4D ARG B 562 UNP P15056 GLN 562 ENGINEERED SEQADV 3C4D ASN B 588 UNP P15056 LEU 588 ENGINEERED SEQADV 3C4D SER B 630 UNP P15056 LYS 630 ENGINEERED SEQADV 3C4D GLU B 667 UNP P15056 PHE 667 ENGINEERED SEQADV 3C4D SER B 673 UNP P15056 TYR 673 ENGINEERED SEQADV 3C4D ARG B 688 UNP P15056 ALA 688 ENGINEERED SEQADV 3C4D SER B 706 UNP P15056 LEU 706 ENGINEERED SEQADV 3C4D ARG B 709 UNP P15056 GLN 709 ENGINEERED SEQADV 3C4D GLU B 713 UNP P15056 SER 713 ENGINEERED SEQADV 3C4D GLU B 716 UNP P15056 LEU 716 ENGINEERED SEQADV 3C4D GLU B 720 UNP P15056 SER 720 ENGINEERED SEQADV 3C4D SER B 722 UNP P15056 EXPRESSION TAG SEQADV 3C4D GLY B 723 UNP P15056 EXPRESSION TAG SEQRES 1 A 280 ARG ASP SER SER ASP ASP TRP GLU ILE PRO ASP GLY GLN SEQRES 2 A 280 ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE GLY SEQRES 3 A 280 THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL SEQRES 4 A 280 LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN LEU SEQRES 5 A 280 GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS THR SEQRES 6 A 280 ARG HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER THR SEQRES 7 A 280 LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SEQRES 8 A 280 SER SER LEU TYR HIS HIS LEU HIS ALA SER GLU THR LYS SEQRES 9 A 280 PHE GLU MET LYS LYS LEU ILE ASP ILE ALA ARG GLN THR SEQRES 10 A 280 ALA ARG GLY MET ASP TYR LEU HIS ALA LYS SER ILE ILE SEQRES 11 A 280 HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS GLU SEQRES 12 A 280 ASP ASN THR VAL LYS ILE GLY ASP PHE GLY LEU ALA THR SEQRES 13 A 280 VAL LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU GLN SEQRES 14 A 280 LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL ILE SEQRES 15 A 280 ARG MET GLN ASP SER ASN PRO TYR SER PHE GLN SER ASP SEQRES 16 A 280 VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET THR SEQRES 17 A 280 GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP GLN SEQRES 18 A 280 ILE ILE GLU MET VAL GLY ARG GLY SER LEU SER PRO ASP SEQRES 19 A 280 LEU SER LYS VAL ARG SER ASN CYS PRO LYS ARG MET LYS SEQRES 20 A 280 ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU SEQRES 21 A 280 ARG PRO SER PHE PRO ARG ILE LEU ALA GLU ILE GLU GLU SEQRES 22 A 280 LEU ALA ARG GLU LEU SER GLY SEQRES 1 B 280 ARG ASP SER SER ASP ASP TRP GLU ILE PRO ASP GLY GLN SEQRES 2 B 280 ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE GLY SEQRES 3 B 280 THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL SEQRES 4 B 280 LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN LEU SEQRES 5 B 280 GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS THR SEQRES 6 B 280 ARG HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER THR SEQRES 7 B 280 LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SEQRES 8 B 280 SER SER LEU TYR HIS HIS LEU HIS ALA SER GLU THR LYS SEQRES 9 B 280 PHE GLU MET LYS LYS LEU ILE ASP ILE ALA ARG GLN THR SEQRES 10 B 280 ALA ARG GLY MET ASP TYR LEU HIS ALA LYS SER ILE ILE SEQRES 11 B 280 HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS GLU SEQRES 12 B 280 ASP ASN THR VAL LYS ILE GLY ASP PHE GLY LEU ALA THR SEQRES 13 B 280 VAL LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU GLN SEQRES 14 B 280 LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL ILE SEQRES 15 B 280 ARG MET GLN ASP SER ASN PRO TYR SER PHE GLN SER ASP SEQRES 16 B 280 VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET THR SEQRES 17 B 280 GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP GLN SEQRES 18 B 280 ILE ILE GLU MET VAL GLY ARG GLY SER LEU SER PRO ASP SEQRES 19 B 280 LEU SER LYS VAL ARG SER ASN CYS PRO LYS ARG MET LYS SEQRES 20 B 280 ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU SEQRES 21 B 280 ARG PRO SER PHE PRO ARG ILE LEU ALA GLU ILE GLU GLU SEQRES 22 B 280 LEU ALA ARG GLU LEU SER GLY HET 325 A 1 31 HETNAM 325 N-{2,4-DIFLUORO-3-[(5-PYRIDIN-3-YL-1H-PYRROLO[2,3- HETNAM 2 325 B]PYRIDIN-3-YL)CARBONYL]PHENYL}ETHANESULFONAMIDE HETSYN 325 PLX3203 FORMUL 3 325 C21 H16 F2 N4 O3 S FORMUL 4 HOH *63(H2 O) HELIX 1 1 GLN A 493 ARG A 506 1 14 HELIX 2 2 SER A 536 HIS A 542 1 7 HELIX 3 3 GLU A 549 LYS A 570 1 22 HELIX 4 4 GLU A 586 ASN A 588 5 3 HELIX 5 5 SER A 616 MET A 620 5 5 HELIX 6 6 ALA A 621 MET A 627 1 7 HELIX 7 7 SER A 634 GLY A 652 1 19 HELIX 8 8 ASN A 661 GLY A 672 1 12 HELIX 9 9 PRO A 686 LEU A 697 1 12 HELIX 10 10 LYS A 700 ARG A 704 5 5 HELIX 11 11 SER A 706 GLU A 715 1 10 HELIX 12 12 GLN B 493 ARG B 506 1 14 HELIX 13 13 SER B 536 HIS B 542 1 7 HELIX 14 14 GLU B 549 LYS B 570 1 22 HELIX 15 15 LYS B 578 ASN B 580 5 3 HELIX 16 16 GLU B 586 ASN B 588 5 3 HELIX 17 17 ALA B 621 MET B 627 1 7 HELIX 18 18 SER B 634 GLY B 652 1 19 HELIX 19 19 ASN B 661 ARG B 671 1 11 HELIX 20 20 ASP B 677 VAL B 681 5 5 HELIX 21 21 PRO B 686 LEU B 697 1 12 HELIX 22 22 LYS B 700 ARG B 704 5 5 HELIX 23 23 SER B 706 ARG B 719 1 14 SHEET 1 A 5 THR A 458 GLY A 464 0 SHEET 2 A 5 THR A 470 LYS A 475 -1 O LYS A 473 N GLY A 460 SHEET 3 A 5 ASP A 479 MET A 484 -1 O VAL A 480 N GLY A 474 SHEET 4 A 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483 SHEET 5 A 5 PHE A 516 SER A 520 -1 N GLY A 518 O VAL A 528 SHEET 1 B 2 ILE A 582 HIS A 585 0 SHEET 2 B 2 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 C 5 THR B 458 GLY B 464 0 SHEET 2 C 5 THR B 470 LYS B 475 -1 O LYS B 473 N GLN B 461 SHEET 3 C 5 ASP B 479 MET B 484 -1 O VAL B 480 N GLY B 474 SHEET 4 C 5 ALA B 526 GLN B 530 -1 O THR B 529 N ALA B 481 SHEET 5 C 5 PHE B 516 SER B 520 -1 N MET B 517 O VAL B 528 SHEET 1 D 2 ILE B 582 HIS B 585 0 SHEET 2 D 2 THR B 589 ILE B 592 -1 O LYS B 591 N PHE B 583 SITE 1 AC1 14 ILE A 463 ALA A 481 LYS A 483 LEU A 505 SITE 2 AC1 14 LEU A 514 ILE A 527 THR A 529 GLN A 530 SITE 3 AC1 14 TRP A 531 CYS A 532 GLY A 593 ASP A 594 SITE 4 AC1 14 PHE A 595 GLY A 596 CRYST1 51.205 105.409 110.473 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019529 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009052 0.00000