HEADER TRANSCRIPTION 30-JAN-08 3C57 TITLE CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC RESPONSE TITLE 2 REGULATOR DOSR C-TERMINAL DOMAIN CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN RESIDUES 144-217; COMPND 5 SYNONYM: PROBABLY LUXR/UHPA-FAMILY, DEVR, DNA-BINDING RESPONSE COMPND 6 REGULATOR, LUXR FAMILY; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: DEVR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28(+) KEYWDS RESPONSE REGULATOR, TWO-COMPONENT REGULATORY SYSTEM, DNA-BINDING KEYWDS 2 PROTEIN, TUBERCULOSIS, TRANSCRIPTION REGULATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.WISEDCHAISRI,M.WU,D.R.SHERMAN,W.G.J.HOL REVDAT 4 30-AUG-23 3C57 1 SEQADV REVDAT 3 13-JUL-11 3C57 1 VERSN REVDAT 2 24-FEB-09 3C57 1 VERSN REVDAT 1 22-APR-08 3C57 0 JRNL AUTH G.WISEDCHAISRI,M.WU,D.R.SHERMAN,W.G.HOL JRNL TITL CRYSTAL STRUCTURES OF THE RESPONSE REGULATOR DOSR FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS SUGGEST A HELIX REARRANGEMENT JRNL TITL 3 MECHANISM FOR PHOSPHORYLATION ACTIVATION JRNL REF J.MOL.BIOL. V. 378 227 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18353359 JRNL DOI 10.1016/J.JMB.2008.02.029 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 14088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.674 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 832 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1130 ; 1.330 ; 2.017 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 119 ; 3.888 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ;27.895 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 178 ;14.086 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.488 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 142 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 588 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 337 ; 0.215 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 585 ; 0.316 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.200 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 82 ; 0.254 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.211 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 547 ; 2.090 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 846 ; 2.631 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 318 ; 3.791 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 273 ; 5.143 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 151 A 199 6 REMARK 3 1 B 151 B 199 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 355 ; 0.48 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 355 ; 1.45 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 43.2510 14.6320 27.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.1526 REMARK 3 T33: 0.0626 T12: -0.0472 REMARK 3 T13: 0.0457 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 7.4648 L22: 33.6219 REMARK 3 L33: 11.7704 L12: 0.2451 REMARK 3 L13: 4.7377 L23: 2.7983 REMARK 3 S TENSOR REMARK 3 S11: 0.1685 S12: -0.1441 S13: 0.1172 REMARK 3 S21: -0.0748 S22: -0.0448 S23: -0.1050 REMARK 3 S31: 0.1550 S32: 0.0542 S33: -0.1238 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7780 16.9200 24.6460 REMARK 3 T TENSOR REMARK 3 T11: -0.0103 T22: 0.0927 REMARK 3 T33: 0.0533 T12: -0.0156 REMARK 3 T13: 0.0013 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 12.1151 L22: 6.4587 REMARK 3 L33: 10.4144 L12: -5.3980 REMARK 3 L13: 1.7908 L23: 0.8934 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.5343 S13: -0.0661 REMARK 3 S21: 0.2677 S22: -0.1484 S23: 0.2115 REMARK 3 S31: 0.1053 S32: 0.0614 S33: 0.1277 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 50.5240 10.7590 21.7090 REMARK 3 T TENSOR REMARK 3 T11: -0.0093 T22: 0.0851 REMARK 3 T33: 0.0703 T12: 0.0328 REMARK 3 T13: 0.0167 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 17.0905 L22: 7.9554 REMARK 3 L33: 7.2340 L12: 7.4454 REMARK 3 L13: 6.4022 L23: 3.0308 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: -0.1517 S13: -0.0276 REMARK 3 S21: -0.1008 S22: 0.0401 S23: 0.1682 REMARK 3 S31: -0.0599 S32: 0.1320 S33: 0.0326 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6670 4.8630 18.9540 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.0328 REMARK 3 T33: 0.0902 T12: -0.0015 REMARK 3 T13: -0.0204 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 32.3974 L22: 11.8780 REMARK 3 L33: 7.0150 L12: 9.4519 REMARK 3 L13: 6.2398 L23: 4.9804 REMARK 3 S TENSOR REMARK 3 S11: 0.1478 S12: -0.2601 S13: 0.0913 REMARK 3 S21: -0.0544 S22: -0.2349 S23: 0.1487 REMARK 3 S31: 0.2618 S32: -0.0523 S33: 0.0870 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3770 -2.5570 15.6930 REMARK 3 T TENSOR REMARK 3 T11: -0.0076 T22: 0.0677 REMARK 3 T33: 0.0960 T12: 0.0158 REMARK 3 T13: -0.0092 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 4.9870 L22: 19.0376 REMARK 3 L33: 11.7666 L12: 1.2121 REMARK 3 L13: 2.1350 L23: 5.6250 REMARK 3 S TENSOR REMARK 3 S11: 0.0964 S12: -0.0387 S13: -0.0144 REMARK 3 S21: 0.0919 S22: 0.1897 S23: -0.2009 REMARK 3 S31: -0.0760 S32: 0.0712 S33: -0.2861 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 151 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9620 3.7010 22.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.0739 T22: 0.1318 REMARK 3 T33: 0.0560 T12: -0.0228 REMARK 3 T13: 0.0136 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 9.4846 L22: 17.3065 REMARK 3 L33: 5.2546 L12: 5.4269 REMARK 3 L13: -1.5584 L23: 2.5153 REMARK 3 S TENSOR REMARK 3 S11: 0.1420 S12: 0.1028 S13: -0.0656 REMARK 3 S21: 0.0732 S22: -0.0308 S23: -0.0856 REMARK 3 S31: -0.2567 S32: 0.0253 S33: -0.1112 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 167 B 176 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9010 1.8550 19.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.1237 REMARK 3 T33: 0.1132 T12: -0.0195 REMARK 3 T13: 0.0173 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 15.9274 L22: 9.0911 REMARK 3 L33: 7.4292 L12: -5.0322 REMARK 3 L13: -1.4971 L23: -2.7279 REMARK 3 S TENSOR REMARK 3 S11: 0.2464 S12: 0.3128 S13: -0.0562 REMARK 3 S21: 0.1406 S22: -0.3540 S23: 0.0921 REMARK 3 S31: -0.0590 S32: 0.3523 S33: 0.1076 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 177 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1580 8.1890 17.1600 REMARK 3 T TENSOR REMARK 3 T11: -0.0074 T22: 0.0773 REMARK 3 T33: 0.1193 T12: 0.0154 REMARK 3 T13: -0.0054 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 18.5575 L22: 11.9848 REMARK 3 L33: 5.1688 L12: 9.3692 REMARK 3 L13: 1.8240 L23: 2.4453 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.0470 S13: -0.3277 REMARK 3 S21: 0.0238 S22: -0.0445 S23: -0.2306 REMARK 3 S31: -0.1755 S32: -0.1390 S33: 0.0553 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 187 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): 37.2780 13.9350 18.3130 REMARK 3 T TENSOR REMARK 3 T11: 0.0222 T22: 0.0402 REMARK 3 T33: 0.1069 T12: -0.0039 REMARK 3 T13: -0.0001 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 33.3473 L22: 10.9049 REMARK 3 L33: 6.2797 L12: 16.8017 REMARK 3 L13: 2.6746 L23: 2.3146 REMARK 3 S TENSOR REMARK 3 S11: 0.2107 S12: 0.0619 S13: -0.1980 REMARK 3 S21: 0.0627 S22: -0.1863 S23: -0.0995 REMARK 3 S31: -0.1355 S32: -0.1420 S33: -0.0244 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 194 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): 43.9040 21.5120 17.6820 REMARK 3 T TENSOR REMARK 3 T11: -0.0091 T22: 0.0656 REMARK 3 T33: 0.0938 T12: 0.0057 REMARK 3 T13: -0.0258 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 10.2011 L22: 18.4700 REMARK 3 L33: 8.0983 L12: 3.3610 REMARK 3 L13: -2.4529 L23: -4.1247 REMARK 3 S TENSOR REMARK 3 S11: 0.1843 S12: -0.1074 S13: 0.0462 REMARK 3 S21: -0.1381 S22: -0.0855 S23: -0.0030 REMARK 3 S31: 0.0675 S32: 0.0233 S33: -0.0988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.430 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: DOSR C-TERMINAL DOMAIN (PDB CODE 1ZLJ) SUBUNIT A REMARK 200 RESIDUES 152-192 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% W/V PEG 5000MME, 0.2M AMMONIUM REMARK 280 SULFATE, 10% GLYCEROL, 0.1M MES PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.81850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.21800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.21800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.81850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 SER A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 SER A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 LEU A 136 REMARK 465 VAL A 137 REMARK 465 PRO A 138 REMARK 465 ARG A 139 REMARK 465 GLY A 140 REMARK 465 SER A 141 REMARK 465 HIS A 142 REMARK 465 MET A 143 REMARK 465 GLN A 144 REMARK 465 ASP A 145 REMARK 465 PRO A 146 REMARK 465 LEU A 147 REMARK 465 SER A 148 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 VAL A 202 REMARK 465 PHE A 203 REMARK 465 ALA A 204 REMARK 465 THR A 205 REMARK 465 GLU A 206 REMARK 465 LEU A 207 REMARK 465 LYS A 208 REMARK 465 ARG A 209 REMARK 465 SER A 210 REMARK 465 ARG A 211 REMARK 465 PRO A 212 REMARK 465 PRO A 213 REMARK 465 GLY A 214 REMARK 465 ASP A 215 REMARK 465 GLY A 216 REMARK 465 PRO A 217 REMARK 465 MET B 123 REMARK 465 GLY B 124 REMARK 465 SER B 125 REMARK 465 SER B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 SER B 133 REMARK 465 SER B 134 REMARK 465 GLY B 135 REMARK 465 LEU B 136 REMARK 465 VAL B 137 REMARK 465 PRO B 138 REMARK 465 ARG B 139 REMARK 465 GLY B 140 REMARK 465 SER B 141 REMARK 465 HIS B 142 REMARK 465 MET B 143 REMARK 465 GLN B 144 REMARK 465 ASP B 145 REMARK 465 PRO B 146 REMARK 465 LEU B 147 REMARK 465 SER B 148 REMARK 465 GLY B 149 REMARK 465 LEU B 150 REMARK 465 ALA B 200 REMARK 465 ALA B 201 REMARK 465 VAL B 202 REMARK 465 PHE B 203 REMARK 465 ALA B 204 REMARK 465 THR B 205 REMARK 465 GLU B 206 REMARK 465 LEU B 207 REMARK 465 LYS B 208 REMARK 465 ARG B 209 REMARK 465 SER B 210 REMARK 465 ARG B 211 REMARK 465 PRO B 212 REMARK 465 PRO B 213 REMARK 465 GLY B 214 REMARK 465 ASP B 215 REMARK 465 GLY B 216 REMARK 465 PRO B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 GLN A 153 CG CD OE1 NE2 REMARK 470 LYS A 168 CE NZ REMARK 470 GLN A 199 CD OE1 NE2 REMARK 470 GLN B 153 CG CD OE1 NE2 REMARK 470 ARG B 155 CZ NH1 NH2 REMARK 470 LYS B 168 CD CE NZ REMARK 470 LYS B 179 CD CE NZ REMARK 470 LYS B 182 CE NZ REMARK 470 GLN B 199 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 172 O HOH B 40 2.18 REMARK 500 OG1 THR A 151 O HOH A 41 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 197 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C3W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC REMARK 900 RESPONSE REGULATOR DOSR REMARK 900 RELATED ID: 1ZLJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC REMARK 900 RESPONSE REGULATOR DOSR C-TERMINAL DOMAIN REMARK 900 RELATED ID: 1ZLK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC REMARK 900 RESPONSE REGULATOR DOSR C-TERMINAL DOMAIN-DNA COMPLEX DBREF 3C57 A 144 217 UNP P95193 P95193_MYCTU 144 217 DBREF 3C57 B 144 217 UNP P95193 P95193_MYCTU 144 217 SEQADV 3C57 MET A 123 UNP P95193 EXPRESSION TAG SEQADV 3C57 GLY A 124 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER A 125 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER A 126 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS A 127 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS A 128 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS A 129 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS A 130 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS A 131 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS A 132 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER A 133 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER A 134 UNP P95193 EXPRESSION TAG SEQADV 3C57 GLY A 135 UNP P95193 EXPRESSION TAG SEQADV 3C57 LEU A 136 UNP P95193 EXPRESSION TAG SEQADV 3C57 VAL A 137 UNP P95193 EXPRESSION TAG SEQADV 3C57 PRO A 138 UNP P95193 EXPRESSION TAG SEQADV 3C57 ARG A 139 UNP P95193 EXPRESSION TAG SEQADV 3C57 GLY A 140 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER A 141 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS A 142 UNP P95193 EXPRESSION TAG SEQADV 3C57 MET A 143 UNP P95193 EXPRESSION TAG SEQADV 3C57 MET B 123 UNP P95193 EXPRESSION TAG SEQADV 3C57 GLY B 124 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER B 125 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER B 126 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS B 127 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS B 128 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS B 129 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS B 130 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS B 131 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS B 132 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER B 133 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER B 134 UNP P95193 EXPRESSION TAG SEQADV 3C57 GLY B 135 UNP P95193 EXPRESSION TAG SEQADV 3C57 LEU B 136 UNP P95193 EXPRESSION TAG SEQADV 3C57 VAL B 137 UNP P95193 EXPRESSION TAG SEQADV 3C57 PRO B 138 UNP P95193 EXPRESSION TAG SEQADV 3C57 ARG B 139 UNP P95193 EXPRESSION TAG SEQADV 3C57 GLY B 140 UNP P95193 EXPRESSION TAG SEQADV 3C57 SER B 141 UNP P95193 EXPRESSION TAG SEQADV 3C57 HIS B 142 UNP P95193 EXPRESSION TAG SEQADV 3C57 MET B 143 UNP P95193 EXPRESSION TAG SEQRES 1 A 95 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 95 LEU VAL PRO ARG GLY SER HIS MET GLN ASP PRO LEU SER SEQRES 3 A 95 GLY LEU THR ASP GLN GLU ARG THR LEU LEU GLY LEU LEU SEQRES 4 A 95 SER GLU GLY LEU THR ASN LYS GLN ILE ALA ASP ARG MET SEQRES 5 A 95 PHE LEU ALA GLU LYS THR VAL LYS ASN TYR VAL SER ARG SEQRES 6 A 95 LEU LEU ALA LYS LEU GLY MET GLU ARG ARG THR GLN ALA SEQRES 7 A 95 ALA VAL PHE ALA THR GLU LEU LYS ARG SER ARG PRO PRO SEQRES 8 A 95 GLY ASP GLY PRO SEQRES 1 B 95 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 95 LEU VAL PRO ARG GLY SER HIS MET GLN ASP PRO LEU SER SEQRES 3 B 95 GLY LEU THR ASP GLN GLU ARG THR LEU LEU GLY LEU LEU SEQRES 4 B 95 SER GLU GLY LEU THR ASN LYS GLN ILE ALA ASP ARG MET SEQRES 5 B 95 PHE LEU ALA GLU LYS THR VAL LYS ASN TYR VAL SER ARG SEQRES 6 B 95 LEU LEU ALA LYS LEU GLY MET GLU ARG ARG THR GLN ALA SEQRES 7 B 95 ALA VAL PHE ALA THR GLU LEU LYS ARG SER ARG PRO PRO SEQRES 8 B 95 GLY ASP GLY PRO FORMUL 3 HOH *49(H2 O) HELIX 1 1 THR A 151 GLU A 163 1 13 HELIX 2 2 THR A 166 PHE A 175 1 10 HELIX 3 3 ALA A 177 GLY A 193 1 17 HELIX 4 4 THR B 151 GLU B 163 1 13 HELIX 5 5 THR B 166 PHE B 175 1 10 HELIX 6 6 ALA B 177 GLY B 193 1 17 CRYST1 39.637 47.400 66.436 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015052 0.00000