data_3C5D # _entry.id 3C5D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3C5D pdb_00003c5d 10.2210/pdb3c5d/pdb NDB DR0043 ? ? RCSB RCSB046361 ? ? WWPDB D_1000046361 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2QEK 'free subtype F HIV-1 DIS extended duplex' unspecified PDB 3C44 'Subtype F HIV-1 DIS extended duplex bound to paromomycin' unspecified PDB 3C3Z 'Subtype F HIV-1 DIS extended duplex bound to ribostamycin' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3C5D _pdbx_database_status.recvd_initial_deposition_date 2008-01-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Freisz, S.' 1 'Lang, K.' 2 'Micura, R.' 3 'Dumas, P.' 4 'Ennifar, E.' 5 # _citation.id primary _citation.title 'Binding of aminoglycoside antibiotics to the duplex form of the HIV-1 genomic RNA dimerization initiation site.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 47 _citation.page_first 4110 _citation.page_last 4113 _citation.year 2008 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18435520 _citation.pdbx_database_id_DOI 10.1002/anie.200800726 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Freisz, S.' 1 ? primary 'Lang, K.' 2 ? primary 'Micura, R.' 3 ? primary 'Dumas, P.' 4 ? primary 'Ennifar, E.' 5 ? # _cell.entry_id 3C5D _cell.length_a 100.086 _cell.length_b 29.294 _cell.length_c 59.607 _cell.angle_alpha 90.00 _cell.angle_beta 120.84 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3C5D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;'HIV-1 subtype F genomic RNA ; 7463.459 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn ;(2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R ,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMET HYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL ; 761.770 2 ? ? ? ? 4 water nat water 18.015 140 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CU(UMS)GCUGAAGUGCACACAGCAAG' _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAAGUGCACACAGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 UMS n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 A n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3C5D _struct_ref.pdbx_db_accession 3C5D _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3C5D A 1 ? 23 ? 3C5D 1 ? 23 ? 1 23 2 1 3C5D B 1 ? 23 ? 3C5D 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LIV non-polymer . ;(2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R ,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMET HYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL ; ;LIVIDOMYCIN A; O-2-AMINO-2,3-DIDEOXY-ALPHA-D-GLUCOPYRANOSYL-(1,4)-O-[BETA-D-MANNOPYRANOSYL-(1,4)-O-2,6-DIAMINO-2,6-DIDEOXY-BETA-L-IDOPY RANOSYL-(1,3)-BETA-D-RIBOFURANOSYL-(1,5)-2-DEOXY-D-STREPTAMINE ; 'C29 H55 N5 O18' 761.770 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168 # _exptl.entry_id 3C5D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_percent_sol 51.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'MPD, KCl, MgCl2, Na cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Na cacodylate' ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 KCl ? ? ? 1 4 1 MPD ? ? ? 1 5 2 'Na cacodylate' ? ? ? 1 6 2 MgCl2 ? ? ? 1 7 2 KCl ? ? ? 1 8 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-12-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator crystal _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9783 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9783 # _reflns.entry_id 3C5D _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 1.8 _reflns.number_obs 24286 _reflns.number_all ? _reflns.percent_possible_obs 89.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.043 _reflns.pdbx_netI_over_sigmaI 31.2 _reflns.B_iso_Wilson_estimate 30.7 _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 53.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.17 _reflns_shell.meanI_over_sigI_obs 6.2 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1452 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3C5D _refine.ls_number_reflns_obs 24175 _refine.ls_number_reflns_all 26926 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 804872.12 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.95 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 89.8 _refine.ls_R_factor_obs 0.232 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.245 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.4 _refine.ls_number_reflns_R_free 1796 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 47.2 _refine.aniso_B[1][1] -8.76 _refine.aniso_B[2][2] 15.47 _refine.aniso_B[3][3] -6.71 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.60 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.361176 _refine.solvent_model_param_bsol 51.1067 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 3C3Z _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3C5D _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.32 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.38 _refine_analyze.Luzzati_sigma_a_free 0.37 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 980 _refine_hist.pdbx_number_atoms_ligand 106 _refine_hist.number_atoms_solvent 140 _refine_hist.number_atoms_total 1226 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 19.95 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 8.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 4.90 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 2390 _refine_ls_shell.R_factor_R_work 0.371 _refine_ls_shell.percent_reflns_obs 58.1 _refine_ls_shell.R_factor_R_free 0.383 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.percent_reflns_R_free 7.4 _refine_ls_shell.number_reflns_R_free 192 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 dna-rna_multi_end.param dna-rna_multi_end.top 'X-RAY DIFFRACTION' 2 lividomycin.param lividomycin.top 'X-RAY DIFFRACTION' 3 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 ums_xplor.param ums_xplor.top 'X-RAY DIFFRACTION' # _struct.entry_id 3C5D _struct.title 'Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to lividomycin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3C5D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HIV-1, RNA, aminoglycoside, lividomycin, extended duplex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 2 "O3'" ? ? ? 1_555 A UMS 3 P ? ? A U 2 A UMS 3 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale2 covale both ? A UMS 3 "O3'" ? ? ? 1_555 A G 4 P ? ? A UMS 3 A G 4 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale3 covale both ? B U 2 "O3'" ? ? ? 1_555 B UMS 3 P ? ? B U 2 B UMS 3 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale4 covale both ? B UMS 3 "O3'" ? ? ? 1_555 B G 4 P ? ? B UMS 3 B G 4 1_555 ? ? ? ? ? ? ? 1.603 ? ? metalc1 metalc ? ? A UMS 3 O4 ? ? ? 1_555 C K . K ? ? A UMS 3 A K 24 1_555 ? ? ? ? ? ? ? 2.658 ? ? metalc2 metalc ? ? A G 4 O6 ? ? ? 1_555 C K . K ? ? A G 4 A K 24 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc3 metalc ? ? C K . K ? ? ? 1_555 G HOH . O ? ? A K 24 A HOH 74 1_555 ? ? ? ? ? ? ? 2.692 ? ? metalc4 metalc ? ? G HOH . O ? ? ? 1_555 F K . K ? ? A HOH 39 B K 26 1_555 ? ? ? ? ? ? ? 2.837 ? ? metalc5 metalc ? ? B UMS 3 O4 ? ? ? 1_555 F K . K ? ? B UMS 3 B K 26 1_555 ? ? ? ? ? ? ? 2.844 ? ? metalc6 metalc ? ? B G 4 O6 ? ? ? 1_555 F K . K ? ? B G 4 B K 26 1_555 ? ? ? ? ? ? ? 2.647 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 22 N1 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 22 N6 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A UMS 3 N3 ? ? ? 1_555 B A 21 N1 ? ? A UMS 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A UMS 3 O4 ? ? ? 1_555 B A 21 N6 ? ? A UMS 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 18 N1 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 18 N6 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 18 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 18 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 18 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 18 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 21 N1 ? ? ? 1_555 B UMS 3 N3 ? ? A A 21 B UMS 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 21 N6 ? ? ? 1_555 B UMS 3 O4 ? ? A A 21 B UMS 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 22 N1 ? ? ? 1_555 B U 2 N3 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 22 N6 ? ? ? 1_555 B U 2 O4 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 23 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 23 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 23 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B LIV 24 ? 13 'BINDING SITE FOR RESIDUE LIV B 24' AC2 Software B LIV 25 ? 15 'BINDING SITE FOR RESIDUE LIV B 25' AC3 Software B K 26 ? 1 'BINDING SITE FOR RESIDUE K B 26' AC4 Software A K 24 ? 1 'BINDING SITE FOR RESIDUE K A 24' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 HOH G . ? HOH A 73 . ? 1_555 ? 2 AC1 13 HOH H . ? HOH B 30 . ? 1_555 ? 3 AC1 13 HOH H . ? HOH B 35 . ? 1_555 ? 4 AC1 13 HOH H . ? HOH B 39 . ? 1_555 ? 5 AC1 13 HOH H . ? HOH B 43 . ? 1_555 ? 6 AC1 13 HOH H . ? HOH B 44 . ? 1_555 ? 7 AC1 13 HOH H . ? HOH B 58 . ? 1_555 ? 8 AC1 13 HOH H . ? HOH B 62 . ? 1_555 ? 9 AC1 13 HOH H . ? HOH B 74 . ? 1_555 ? 10 AC1 13 HOH H . ? HOH B 86 . ? 1_555 ? 11 AC1 13 HOH H . ? HOH B 95 . ? 1_555 ? 12 AC1 13 HOH H . ? HOH B 104 . ? 1_555 ? 13 AC1 13 HOH H . ? HOH B 105 . ? 1_555 ? 14 AC2 15 HOH G . ? HOH A 30 . ? 1_555 ? 15 AC2 15 HOH G . ? HOH A 33 . ? 1_555 ? 16 AC2 15 HOH H . ? HOH B 27 . ? 1_555 ? 17 AC2 15 HOH H . ? HOH B 30 . ? 1_555 ? 18 AC2 15 HOH H . ? HOH B 31 . ? 1_555 ? 19 AC2 15 HOH H . ? HOH B 35 . ? 1_555 ? 20 AC2 15 HOH H . ? HOH B 43 . ? 1_555 ? 21 AC2 15 HOH H . ? HOH B 45 . ? 1_555 ? 22 AC2 15 HOH H . ? HOH B 65 . ? 1_555 ? 23 AC2 15 HOH H . ? HOH B 85 . ? 1_555 ? 24 AC2 15 HOH H . ? HOH B 88 . ? 1_555 ? 25 AC2 15 HOH H . ? HOH B 90 . ? 1_555 ? 26 AC2 15 HOH H . ? HOH B 111 . ? 1_555 ? 27 AC2 15 HOH H . ? HOH B 112 . ? 1_555 ? 28 AC2 15 HOH H . ? HOH B 113 . ? 1_555 ? 29 AC3 1 HOH G . ? HOH A 39 . ? 1_555 ? 30 AC4 1 HOH G . ? HOH A 74 . ? 1_555 ? # _database_PDB_matrix.entry_id 3C5D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3C5D _atom_sites.fract_transf_matrix[1][1] 0.009991 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005966 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034137 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019539 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C CYT A . n A 1 2 U 2 2 2 U URI A . n A 1 3 UMS 3 3 3 UMS UMS A . n A 1 4 G 4 4 4 G GUA A . n A 1 5 C 5 5 5 C CYT A . n A 1 6 U 6 6 6 U URI A . n A 1 7 G 7 7 7 G GUA A . n A 1 8 A 8 8 8 A ADE A . n A 1 9 A 9 9 9 A ADE A . n A 1 10 G 10 10 10 G GUA A . n A 1 11 U 11 11 11 U URI A . n A 1 12 G 12 12 12 G GUA A . n A 1 13 C 13 13 13 C CYT A . n A 1 14 A 14 14 14 A ADE A . n A 1 15 C 15 15 15 C CYT A . n A 1 16 A 16 16 16 A ADE A . n A 1 17 C 17 17 17 C CYT A . n A 1 18 A 18 18 18 A ADE A . n A 1 19 G 19 19 19 G GUA A . n A 1 20 C 20 20 20 C CYT A . n A 1 21 A 21 21 21 A ADE A . n A 1 22 A 22 22 22 A ADE A . n A 1 23 G 23 23 23 G GUA A . n B 1 1 C 1 1 1 C CYT B . n B 1 2 U 2 2 2 U URI B . n B 1 3 UMS 3 3 3 UMS UMS B . n B 1 4 G 4 4 4 G GUA B . n B 1 5 C 5 5 5 C CYT B . n B 1 6 U 6 6 6 U URI B . n B 1 7 G 7 7 7 G GUA B . n B 1 8 A 8 8 8 A ADE B . n B 1 9 A 9 9 9 A ADE B . n B 1 10 G 10 10 10 G GUA B . n B 1 11 U 11 11 11 U URI B . n B 1 12 G 12 12 12 G GUA B . n B 1 13 C 13 13 13 C CYT B . n B 1 14 A 14 14 14 A ADE B . n B 1 15 C 15 15 15 C CYT B . n B 1 16 A 16 16 16 A ADE B . n B 1 17 C 17 17 17 C CYT B . n B 1 18 A 18 18 18 A ADE B . n B 1 19 G 19 19 19 G GUA B . n B 1 20 C 20 20 20 C CYT B . n B 1 21 A 21 21 21 A ADE B . n B 1 22 A 22 22 22 A ADE B . n B 1 23 G 23 23 23 G GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 24 2 K K1 A . D 3 LIV 1 24 1 LIV LIV B . E 3 LIV 1 25 1 LIV LIV B . F 2 K 1 26 1 K K1 B . G 4 HOH 1 25 6 HOH TIP A . G 4 HOH 2 26 7 HOH TIP A . G 4 HOH 3 27 10 HOH TIP A . G 4 HOH 4 28 11 HOH TIP A . G 4 HOH 5 29 12 HOH TIP A . G 4 HOH 6 30 15 HOH TIP A . G 4 HOH 7 31 16 HOH TIP A . G 4 HOH 8 32 18 HOH TIP A . G 4 HOH 9 33 20 HOH TIP A . G 4 HOH 10 34 24 HOH TIP A . G 4 HOH 11 35 26 HOH TIP A . G 4 HOH 12 36 32 HOH TIP A . G 4 HOH 13 37 33 HOH TIP A . G 4 HOH 14 38 37 HOH TIP A . G 4 HOH 15 39 38 HOH TIP A . G 4 HOH 16 40 42 HOH TIP A . G 4 HOH 17 41 45 HOH TIP A . G 4 HOH 18 42 46 HOH TIP A . G 4 HOH 19 43 50 HOH TIP A . G 4 HOH 20 44 52 HOH TIP A . G 4 HOH 21 45 54 HOH TIP A . G 4 HOH 22 46 57 HOH TIP A . G 4 HOH 23 47 58 HOH TIP A . G 4 HOH 24 48 59 HOH TIP A . G 4 HOH 25 49 61 HOH TIP A . G 4 HOH 26 50 70 HOH TIP A . G 4 HOH 27 51 77 HOH TIP A . G 4 HOH 28 52 80 HOH TIP A . G 4 HOH 29 53 85 HOH TIP A . G 4 HOH 30 54 87 HOH TIP A . G 4 HOH 31 55 88 HOH TIP A . G 4 HOH 32 56 90 HOH TIP A . G 4 HOH 33 57 91 HOH TIP A . G 4 HOH 34 58 94 HOH TIP A . G 4 HOH 35 59 97 HOH TIP A . G 4 HOH 36 60 99 HOH TIP A . G 4 HOH 37 61 100 HOH TIP A . G 4 HOH 38 62 104 HOH TIP A . G 4 HOH 39 63 108 HOH TIP A . G 4 HOH 40 64 116 HOH TIP A . G 4 HOH 41 65 118 HOH TIP A . G 4 HOH 42 66 119 HOH TIP A . G 4 HOH 43 67 124 HOH TIP A . G 4 HOH 44 68 134 HOH TIP A . G 4 HOH 45 69 135 HOH TIP A . G 4 HOH 46 70 137 HOH TIP A . G 4 HOH 47 71 142 HOH TIP A . G 4 HOH 48 72 144 HOH TIP A . G 4 HOH 49 73 146 HOH TIP A . G 4 HOH 50 74 147 HOH TIP A . G 4 HOH 51 75 149 HOH TIP A . G 4 HOH 52 76 150 HOH TIP A . G 4 HOH 53 77 154 HOH TIP A . H 4 HOH 1 27 1 HOH TIP B . H 4 HOH 2 28 2 HOH TIP B . H 4 HOH 3 29 3 HOH TIP B . H 4 HOH 4 30 4 HOH TIP B . H 4 HOH 5 31 5 HOH TIP B . H 4 HOH 6 32 8 HOH TIP B . H 4 HOH 7 33 9 HOH TIP B . H 4 HOH 8 34 13 HOH TIP B . H 4 HOH 9 35 14 HOH TIP B . H 4 HOH 10 36 17 HOH TIP B . H 4 HOH 11 37 19 HOH TIP B . H 4 HOH 12 38 21 HOH TIP B . H 4 HOH 13 39 22 HOH TIP B . H 4 HOH 14 40 23 HOH TIP B . H 4 HOH 15 41 27 HOH TIP B . H 4 HOH 16 42 28 HOH TIP B . H 4 HOH 17 43 29 HOH TIP B . H 4 HOH 18 44 30 HOH TIP B . H 4 HOH 19 45 31 HOH TIP B . H 4 HOH 20 46 34 HOH TIP B . H 4 HOH 21 47 35 HOH TIP B . H 4 HOH 22 48 36 HOH TIP B . H 4 HOH 23 49 39 HOH TIP B . H 4 HOH 24 50 40 HOH TIP B . H 4 HOH 25 51 41 HOH TIP B . H 4 HOH 26 52 43 HOH TIP B . H 4 HOH 27 53 44 HOH TIP B . H 4 HOH 28 54 47 HOH TIP B . H 4 HOH 29 55 48 HOH TIP B . H 4 HOH 30 56 51 HOH TIP B . H 4 HOH 31 57 53 HOH TIP B . H 4 HOH 32 58 55 HOH TIP B . H 4 HOH 33 59 56 HOH TIP B . H 4 HOH 34 60 60 HOH TIP B . H 4 HOH 35 61 63 HOH TIP B . H 4 HOH 36 62 64 HOH TIP B . H 4 HOH 37 63 65 HOH TIP B . H 4 HOH 38 64 66 HOH TIP B . H 4 HOH 39 65 67 HOH TIP B . H 4 HOH 40 66 68 HOH TIP B . H 4 HOH 41 67 69 HOH TIP B . H 4 HOH 42 68 71 HOH TIP B . H 4 HOH 43 69 72 HOH TIP B . H 4 HOH 44 70 73 HOH TIP B . H 4 HOH 45 71 74 HOH TIP B . H 4 HOH 46 72 75 HOH TIP B . H 4 HOH 47 73 76 HOH TIP B . H 4 HOH 48 74 78 HOH TIP B . H 4 HOH 49 75 79 HOH TIP B . H 4 HOH 50 76 81 HOH TIP B . H 4 HOH 51 77 82 HOH TIP B . H 4 HOH 52 78 83 HOH TIP B . H 4 HOH 53 79 84 HOH TIP B . H 4 HOH 54 80 89 HOH TIP B . H 4 HOH 55 81 92 HOH TIP B . H 4 HOH 56 82 96 HOH TIP B . H 4 HOH 57 83 98 HOH TIP B . H 4 HOH 58 84 101 HOH TIP B . H 4 HOH 59 85 102 HOH TIP B . H 4 HOH 60 86 103 HOH TIP B . H 4 HOH 61 87 105 HOH TIP B . H 4 HOH 62 88 106 HOH TIP B . H 4 HOH 63 89 109 HOH TIP B . H 4 HOH 64 90 110 HOH TIP B . H 4 HOH 65 91 111 HOH TIP B . H 4 HOH 66 92 112 HOH TIP B . H 4 HOH 67 93 115 HOH TIP B . H 4 HOH 68 94 117 HOH TIP B . H 4 HOH 69 95 120 HOH TIP B . H 4 HOH 70 96 121 HOH TIP B . H 4 HOH 71 97 122 HOH TIP B . H 4 HOH 72 98 125 HOH TIP B . H 4 HOH 73 99 128 HOH TIP B . H 4 HOH 74 100 129 HOH TIP B . H 4 HOH 75 101 131 HOH TIP B . H 4 HOH 76 102 132 HOH TIP B . H 4 HOH 77 103 133 HOH TIP B . H 4 HOH 78 104 138 HOH TIP B . H 4 HOH 79 105 140 HOH TIP B . H 4 HOH 80 106 141 HOH TIP B . H 4 HOH 81 107 145 HOH TIP B . H 4 HOH 82 108 148 HOH TIP B . H 4 HOH 83 109 151 HOH TIP B . H 4 HOH 84 110 152 HOH TIP B . H 4 HOH 85 111 153 HOH TIP B . H 4 HOH 86 112 155 HOH TIP B . H 4 HOH 87 113 156 HOH TIP B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A UMS 3 A UMS 3 ? DU ? 2 B UMS 3 B UMS 3 ? DU ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MAJOR GROOVE BINDER' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7140 ? 1 MORE -46 ? 1 'SSA (A^2)' 7330 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 51 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A UMS 3 ? A UMS 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A G 4 ? A G 4 ? 1_555 72.8 ? 2 O4 ? A UMS 3 ? A UMS 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? G HOH . ? A HOH 74 ? 1_555 91.4 ? 3 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? G HOH . ? A HOH 74 ? 1_555 89.0 ? 4 O ? G HOH . ? A HOH 39 ? 1_555 K ? F K . ? B K 26 ? 1_555 O4 ? B UMS 3 ? B UMS 3 ? 1_555 148.6 ? 5 O ? G HOH . ? A HOH 39 ? 1_555 K ? F K . ? B K 26 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 97.3 ? 6 O4 ? B UMS 3 ? B UMS 3 ? 1_555 K ? F K . ? B K 26 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 76.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' entity 6 3 'Structure model' pdbx_entity_nonpoly 7 3 'Structure model' pdbx_initial_refinement_model 8 3 'Structure model' pdbx_struct_conn_angle 9 3 'Structure model' struct_conn 10 3 'Structure model' struct_conn_type 11 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.pdbx_synonyms' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_entity.pdbx_description' 6 3 'Structure model' '_pdbx_entity_nonpoly.name' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.value' 22 3 'Structure model' '_struct_conn.conn_type_id' 23 3 'Structure model' '_struct_conn.id' 24 3 'Structure model' '_struct_conn.pdbx_dist_value' 25 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 3 'Structure model' '_struct_conn_type.id' 41 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DNA 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A UMS 3 ? ? "O3'" A UMS 3 ? ? P A G 4 ? ? 128.09 119.70 8.39 1.20 Y 2 1 "C3'" B UMS 3 ? ? "O3'" B UMS 3 ? ? P B G 4 ? ? 127.12 119.70 7.42 1.20 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 LIV C11 C N S 115 LIV O11 O N N 116 LIV C21 C N R 117 LIV N21 N N N 118 LIV C31 C N N 119 LIV C41 C N S 120 LIV O41 O N N 121 LIV C51 C N R 122 LIV O51 O N N 123 LIV C61 C N N 124 LIV O61 O N N 125 LIV C12 C N R 126 LIV N12 N N N 127 LIV C62 C N S 128 LIV O62 O N N 129 LIV C52 C N R 130 LIV O52 O N N 131 LIV C42 C N R 132 LIV C32 C N S 133 LIV N32 N N N 134 LIV C22 C N N 135 LIV C13 C N S 136 LIV C23 C N R 137 LIV O23 O N N 138 LIV C33 C N S 139 LIV C43 C N R 140 LIV O43 O N N 141 LIV C53 C N N 142 LIV O53 O N N 143 LIV C44 C N S 144 LIV O44 O N N 145 LIV C34 C N R 146 LIV O34 O N N 147 LIV C24 C N R 148 LIV N24 N N N 149 LIV C14 C N R 150 LIV O33 O N N 151 LIV C54 C N S 152 LIV O54 O N N 153 LIV C64 C N N 154 LIV N64 N N N 155 LIV C15 C N R 156 LIV C25 C N S 157 LIV C35 C N S 158 LIV C45 C N S 159 LIV C55 C N R 160 LIV C65 C N N 161 LIV O25 O N N 162 LIV O35 O N N 163 LIV O45 O N N 164 LIV O55 O N N 165 LIV O65 O N N 166 LIV H11 H N N 167 LIV H21 H N N 168 LIV H211 H N N 169 LIV H212 H N N 170 LIV H311 H N N 171 LIV H312 H N N 172 LIV H41 H N N 173 LIV H3 H N N 174 LIV H51 H N N 175 LIV H611 H N N 176 LIV H612 H N N 177 LIV H61 H N N 178 LIV H12 H N N 179 LIV H121 H N N 180 LIV H122 H N N 181 LIV H62 H N N 182 LIV H2 H N N 183 LIV H52 H N N 184 LIV H42 H N N 185 LIV H32 H N N 186 LIV H321 H N N 187 LIV H322 H N N 188 LIV H221 H N N 189 LIV H222 H N N 190 LIV H13 H N N 191 LIV H23 H N N 192 LIV H1 H N N 193 LIV H33 H N N 194 LIV H43 H N N 195 LIV H531 H N N 196 LIV H532 H N N 197 LIV H53 H N N 198 LIV H44 H N N 199 LIV H34 H N N 200 LIV H4 H N N 201 LIV H24 H N N 202 LIV H241 H N N 203 LIV H242 H N N 204 LIV H14 H N N 205 LIV H54 H N N 206 LIV H11A H N N 207 LIV H12A H N N 208 LIV H641 H N N 209 LIV H642 H N N 210 LIV H15 H N N 211 LIV H25 H N N 212 LIV H35 H N N 213 LIV H45 H N N 214 LIV H55 H N N 215 LIV H651 H N N 216 LIV H652 H N N 217 LIV H7 H N N 218 LIV H6 H N N 219 LIV H5 H N N 220 LIV H65 H N N 221 U OP3 O N N 222 U P P N N 223 U OP1 O N N 224 U OP2 O N N 225 U "O5'" O N N 226 U "C5'" C N N 227 U "C4'" C N R 228 U "O4'" O N N 229 U "C3'" C N S 230 U "O3'" O N N 231 U "C2'" C N R 232 U "O2'" O N N 233 U "C1'" C N R 234 U N1 N N N 235 U C2 C N N 236 U O2 O N N 237 U N3 N N N 238 U C4 C N N 239 U O4 O N N 240 U C5 C N N 241 U C6 C N N 242 U HOP3 H N N 243 U HOP2 H N N 244 U "H5'" H N N 245 U "H5''" H N N 246 U "H4'" H N N 247 U "H3'" H N N 248 U "HO3'" H N N 249 U "H2'" H N N 250 U "HO2'" H N N 251 U "H1'" H N N 252 U H3 H N N 253 U H5 H N N 254 U H6 H N N 255 UMS OP3 O N N 256 UMS P P N N 257 UMS OP1 O N N 258 UMS OP2 O N N 259 UMS "O5'" O N N 260 UMS "C5'" C N N 261 UMS "C4'" C N R 262 UMS "O4'" O N N 263 UMS "C3'" C N R 264 UMS "O3'" O N N 265 UMS "C2'" C N R 266 UMS "SE2'" SE N N 267 UMS "C1'" C N R 268 UMS "CA'" C N N 269 UMS N1 N N N 270 UMS C2 C N N 271 UMS O2 O N N 272 UMS N3 N N N 273 UMS C4 C N N 274 UMS O4 O N N 275 UMS C5 C N N 276 UMS C6 C N N 277 UMS HOP3 H N N 278 UMS HOP2 H N N 279 UMS "H5'" H N N 280 UMS "H5'2" H N N 281 UMS "H4'" H N N 282 UMS "H3'" H N N 283 UMS "HO3'" H N N 284 UMS "H2'" H N N 285 UMS "H1'" H N N 286 UMS "HA'" H N N 287 UMS "HA'2" H N N 288 UMS "HA'3" H N N 289 UMS H3 H N N 290 UMS H5 H N N 291 UMS H6 H N N 292 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 LIV C11 O11 sing N N 118 LIV C11 C21 sing N N 119 LIV C11 O51 sing N N 120 LIV C11 H11 sing N N 121 LIV O11 C42 sing N N 122 LIV C21 N21 sing N N 123 LIV C21 C31 sing N N 124 LIV C21 H21 sing N N 125 LIV N21 H211 sing N N 126 LIV N21 H212 sing N N 127 LIV C31 C41 sing N N 128 LIV C31 H311 sing N N 129 LIV C31 H312 sing N N 130 LIV C41 O41 sing N N 131 LIV C41 C51 sing N N 132 LIV C41 H41 sing N N 133 LIV O41 H3 sing N N 134 LIV C51 O51 sing N N 135 LIV C51 C61 sing N N 136 LIV C51 H51 sing N N 137 LIV C61 O61 sing N N 138 LIV C61 H611 sing N N 139 LIV C61 H612 sing N N 140 LIV O61 H61 sing N N 141 LIV C12 N12 sing N N 142 LIV C12 C62 sing N N 143 LIV C12 C22 sing N N 144 LIV C12 H12 sing N N 145 LIV N12 H121 sing N N 146 LIV N12 H122 sing N N 147 LIV C62 O62 sing N N 148 LIV C62 C52 sing N N 149 LIV C62 H62 sing N N 150 LIV O62 H2 sing N N 151 LIV C52 O52 sing N N 152 LIV C52 C42 sing N N 153 LIV C52 H52 sing N N 154 LIV O52 C13 sing N N 155 LIV C42 C32 sing N N 156 LIV C42 H42 sing N N 157 LIV C32 N32 sing N N 158 LIV C32 C22 sing N N 159 LIV C32 H32 sing N N 160 LIV N32 H321 sing N N 161 LIV N32 H322 sing N N 162 LIV C22 H221 sing N N 163 LIV C22 H222 sing N N 164 LIV C13 C23 sing N N 165 LIV C13 O43 sing N N 166 LIV C13 H13 sing N N 167 LIV C23 O23 sing N N 168 LIV C23 C33 sing N N 169 LIV C23 H23 sing N N 170 LIV O23 H1 sing N N 171 LIV C33 C43 sing N N 172 LIV C33 O33 sing N N 173 LIV C33 H33 sing N N 174 LIV C43 O43 sing N N 175 LIV C43 C53 sing N N 176 LIV C43 H43 sing N N 177 LIV C53 O53 sing N N 178 LIV C53 H531 sing N N 179 LIV C53 H532 sing N N 180 LIV O53 H53 sing N N 181 LIV C44 O44 sing N N 182 LIV C44 C34 sing N N 183 LIV C44 C54 sing N N 184 LIV C44 H44 sing N N 185 LIV O44 C15 sing N N 186 LIV C34 O34 sing N N 187 LIV C34 C24 sing N N 188 LIV C34 H34 sing N N 189 LIV O34 H4 sing N N 190 LIV C24 N24 sing N N 191 LIV C24 C14 sing N N 192 LIV C24 H24 sing N N 193 LIV N24 H241 sing N N 194 LIV N24 H242 sing N N 195 LIV C14 O33 sing N N 196 LIV C14 O54 sing N N 197 LIV C14 H14 sing N N 198 LIV C54 O54 sing N N 199 LIV C54 C64 sing N N 200 LIV C54 H54 sing N N 201 LIV C64 N64 sing N N 202 LIV C64 H11A sing N N 203 LIV C64 H12A sing N N 204 LIV N64 H641 sing N N 205 LIV N64 H642 sing N N 206 LIV C15 C25 sing N N 207 LIV C15 O55 sing N N 208 LIV C15 H15 sing N N 209 LIV C25 C35 sing N N 210 LIV C25 O25 sing N N 211 LIV C25 H25 sing N N 212 LIV C35 C45 sing N N 213 LIV C35 O35 sing N N 214 LIV C35 H35 sing N N 215 LIV C45 C55 sing N N 216 LIV C45 O45 sing N N 217 LIV C45 H45 sing N N 218 LIV C55 C65 sing N N 219 LIV C55 O55 sing N N 220 LIV C55 H55 sing N N 221 LIV C65 O65 sing N N 222 LIV C65 H651 sing N N 223 LIV C65 H652 sing N N 224 LIV O25 H7 sing N N 225 LIV O35 H6 sing N N 226 LIV O45 H5 sing N N 227 LIV O65 H65 sing N N 228 U OP3 P sing N N 229 U OP3 HOP3 sing N N 230 U P OP1 doub N N 231 U P OP2 sing N N 232 U P "O5'" sing N N 233 U OP2 HOP2 sing N N 234 U "O5'" "C5'" sing N N 235 U "C5'" "C4'" sing N N 236 U "C5'" "H5'" sing N N 237 U "C5'" "H5''" sing N N 238 U "C4'" "O4'" sing N N 239 U "C4'" "C3'" sing N N 240 U "C4'" "H4'" sing N N 241 U "O4'" "C1'" sing N N 242 U "C3'" "O3'" sing N N 243 U "C3'" "C2'" sing N N 244 U "C3'" "H3'" sing N N 245 U "O3'" "HO3'" sing N N 246 U "C2'" "O2'" sing N N 247 U "C2'" "C1'" sing N N 248 U "C2'" "H2'" sing N N 249 U "O2'" "HO2'" sing N N 250 U "C1'" N1 sing N N 251 U "C1'" "H1'" sing N N 252 U N1 C2 sing N N 253 U N1 C6 sing N N 254 U C2 O2 doub N N 255 U C2 N3 sing N N 256 U N3 C4 sing N N 257 U N3 H3 sing N N 258 U C4 O4 doub N N 259 U C4 C5 sing N N 260 U C5 C6 doub N N 261 U C5 H5 sing N N 262 U C6 H6 sing N N 263 UMS OP3 P sing N N 264 UMS OP3 HOP3 sing N N 265 UMS P OP1 doub N N 266 UMS P OP2 sing N N 267 UMS P "O5'" sing N N 268 UMS OP2 HOP2 sing N N 269 UMS "O5'" "C5'" sing N N 270 UMS "C5'" "C4'" sing N N 271 UMS "C5'" "H5'" sing N N 272 UMS "C5'" "H5'2" sing N N 273 UMS "C4'" "O4'" sing N N 274 UMS "C4'" "C3'" sing N N 275 UMS "C4'" "H4'" sing N N 276 UMS "O4'" "C1'" sing N N 277 UMS "C3'" "O3'" sing N N 278 UMS "C3'" "C2'" sing N N 279 UMS "C3'" "H3'" sing N N 280 UMS "O3'" "HO3'" sing N N 281 UMS "C2'" "SE2'" sing N N 282 UMS "C2'" "C1'" sing N N 283 UMS "C2'" "H2'" sing N N 284 UMS "SE2'" "CA'" sing N N 285 UMS "C1'" N1 sing N N 286 UMS "C1'" "H1'" sing N N 287 UMS "CA'" "HA'" sing N N 288 UMS "CA'" "HA'2" sing N N 289 UMS "CA'" "HA'3" sing N N 290 UMS N1 C2 sing N N 291 UMS N1 C6 sing N N 292 UMS C2 O2 doub N N 293 UMS C2 N3 sing N N 294 UMS N3 C4 sing N N 295 UMS N3 H3 sing N N 296 UMS C4 O4 doub N N 297 UMS C4 C5 sing N N 298 UMS C5 C6 doub N N 299 UMS C5 H5 sing N N 300 UMS C6 H6 sing N N 301 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3C5D 'double helix' 3C5D 'a-form double helix' 3C5D 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 23 1_555 0.015 -0.283 0.057 7.410 -20.730 -3.971 1 A_C1:G23_B A 1 ? B 23 ? 19 1 1 A U 2 1_555 B A 22 1_555 -0.178 -0.112 0.164 1.661 -17.275 4.626 2 A_U2:A22_B A 2 ? B 22 ? 20 1 1 A UMS 3 1_555 B A 21 1_555 0.239 -0.180 0.062 5.353 -12.411 5.204 3 A_UMS3:A21_B A 3 ? B 21 ? 20 1 1 A G 4 1_555 B C 20 1_555 0.007 -0.183 0.095 -2.647 -17.662 1.382 4 A_G4:C20_B A 4 ? B 20 ? 19 1 1 A C 5 1_555 B G 19 1_555 0.324 -0.141 0.206 -2.913 -14.187 1.512 5 A_C5:G19_B A 5 ? B 19 ? 19 1 1 A U 6 1_555 B A 18 1_555 -0.155 -0.171 0.204 -0.492 -13.479 3.856 6 A_U6:A18_B A 6 ? B 18 ? 20 1 1 A G 7 1_555 B C 17 1_555 -0.388 -0.099 -0.007 -9.942 -28.968 4.680 7 A_G7:C17_B A 7 ? B 17 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.343 -0.231 -0.218 1.962 -7.898 -1.414 8 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A U 11 1_555 B A 14 1_555 -0.306 -0.112 -0.090 0.256 -7.854 -1.529 9 A_U11:A14_B A 11 ? B 14 ? 20 1 1 A G 12 1_555 B C 13 1_555 0.045 -0.234 0.374 8.481 -4.832 -2.429 10 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 0.301 -0.214 0.016 -0.186 -13.486 3.054 11 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A A 14 1_555 B U 11 1_555 0.148 -0.182 -0.001 -3.631 -12.143 1.853 12 A_A14:U11_B A 14 ? B 11 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.407 -0.099 0.117 -2.979 -9.395 1.893 13 A_C15:G10_B A 15 ? B 10 ? 19 1 1 A C 17 1_555 B G 7 1_555 0.325 -0.304 -0.005 7.598 -19.736 2.164 14 A_C17:G7_B A 17 ? B 7 ? 19 1 1 A A 18 1_555 B U 6 1_555 -0.024 -0.112 0.237 3.737 -18.587 8.314 15 A_A18:U6_B A 18 ? B 6 ? 20 1 1 A G 19 1_555 B C 5 1_555 -0.226 -0.171 -0.028 2.489 -13.285 1.610 16 A_G19:C5_B A 19 ? B 5 ? 19 1 1 A C 20 1_555 B G 4 1_555 0.275 -0.098 0.050 2.777 -12.340 2.497 17 A_C20:G4_B A 20 ? B 4 ? 19 1 1 A A 21 1_555 B UMS 3 1_555 -0.070 -0.150 -0.028 -4.568 -10.693 4.272 18 A_A21:UMS3_B A 21 ? B 3 ? 20 1 1 A A 22 1_555 B U 2 1_555 0.325 -0.392 0.335 1.986 -13.640 0.138 19 A_A22:U2_B A 22 ? B 2 ? 20 1 1 A G 23 1_555 B C 1 1_555 -0.201 -0.335 -0.080 -6.295 -20.468 1.196 20 A_G23:C1_B A 23 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 23 1_555 A U 2 1_555 B A 22 1_555 -0.127 -1.300 3.262 -3.550 12.277 34.126 -3.682 -0.259 2.652 20.068 5.803 36.374 1 AA_C1U2:A22G23_BB A 1 ? B 23 ? A 2 ? B 22 ? 1 A U 2 1_555 B A 22 1_555 A UMS 3 1_555 B A 21 1_555 -0.016 -0.952 3.195 -1.685 5.865 34.352 -2.437 -0.217 2.994 9.834 2.825 34.874 2 AA_U2UMS3:A21A22_BB A 2 ? B 22 ? A 3 ? B 21 ? 1 A UMS 3 1_555 B A 21 1_555 A G 4 1_555 B C 20 1_555 0.048 -1.353 3.131 1.413 16.921 32.143 -4.225 0.095 2.174 28.235 -2.358 36.247 3 AA_UMS3G4:C20A21_BB A 3 ? B 21 ? A 4 ? B 20 ? 1 A G 4 1_555 B C 20 1_555 A C 5 1_555 B G 19 1_555 0.180 -1.502 3.264 0.242 3.174 33.851 -3.064 -0.270 3.116 5.437 -0.414 33.996 4 AA_G4C5:G19C20_BB A 4 ? B 20 ? A 5 ? B 19 ? 1 A C 5 1_555 B G 19 1_555 A U 6 1_555 B A 18 1_555 -0.019 -1.660 3.092 0.556 7.122 24.807 -5.459 0.178 2.523 16.155 -1.262 25.800 5 AA_C5U6:A18G19_BB A 5 ? B 19 ? A 6 ? B 18 ? 1 A U 6 1_555 B A 18 1_555 A G 7 1_555 B C 17 1_555 -0.075 -1.444 3.303 1.465 15.574 32.383 -4.389 0.314 2.378 26.110 -2.456 35.872 6 AA_U6G7:C17A18_BB A 6 ? B 18 ? A 7 ? B 17 ? 1 A G 7 1_555 B C 17 1_555 A G 10 1_555 B C 15 1_555 -1.520 -3.425 6.240 8.511 21.787 78.501 -3.622 1.554 5.155 16.874 -6.592 81.369 7 AA_G7G10:C15C17_BB A 7 ? B 17 ? A 10 ? B 15 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.585 -2.608 3.332 -3.339 0.398 33.396 -4.584 0.453 3.343 0.691 5.791 33.560 8 AA_G10U11:A14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 11 1_555 B A 14 1_555 A G 12 1_555 B C 13 1_555 -1.093 -1.753 2.959 -4.088 9.087 27.888 -5.063 1.407 2.413 18.137 8.159 29.582 9 AA_U11G12:C13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 0.775 -1.350 3.492 2.844 14.157 35.288 -3.878 -0.825 2.818 22.239 -4.468 38.041 10 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A A 14 1_555 B U 11 1_555 0.238 -1.397 3.170 0.444 12.649 32.049 -4.127 -0.341 2.463 21.875 -0.768 34.397 11 AA_C13A14:U11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.414 -2.420 3.284 1.166 -0.118 31.930 -4.375 -0.539 3.306 -0.214 -2.118 31.951 12 AA_A14C15:G10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 A C 15 1_555 B G 10 1_555 A C 17 1_555 B G 7 1_555 1.388 -3.648 6.113 -6.372 16.650 77.524 -3.657 -1.393 5.263 13.135 5.027 79.232 13 AA_C15C17:G7G10_BB A 15 ? B 10 ? A 17 ? B 7 ? 1 A C 17 1_555 B G 7 1_555 A A 18 1_555 B U 6 1_555 0.388 -1.472 3.188 -0.949 13.358 31.633 -4.360 -0.790 2.379 23.245 1.651 34.284 14 AA_C17A18:U6G7_BB A 17 ? B 7 ? A 18 ? B 6 ? 1 A A 18 1_555 B U 6 1_555 A G 19 1_555 B C 5 1_555 -0.782 -1.510 3.275 -1.990 7.811 29.661 -4.310 1.105 2.840 14.914 3.800 30.713 15 AA_A18G19:C5U6_BB A 18 ? B 6 ? A 19 ? B 5 ? 1 A G 19 1_555 B C 5 1_555 A C 20 1_555 B G 4 1_555 0.200 -1.536 3.216 -0.659 6.174 34.226 -3.459 -0.429 2.899 10.384 1.108 34.768 16 AA_G19C20:G4C5_BB A 19 ? B 5 ? A 20 ? B 4 ? 1 A C 20 1_555 B G 4 1_555 A A 21 1_555 B UMS 3 1_555 -0.187 -1.515 3.221 0.916 12.686 30.086 -4.674 0.475 2.397 23.180 -1.673 32.607 17 AA_C20A21:UMS3G4_BB A 20 ? B 4 ? A 21 ? B 3 ? 1 A A 21 1_555 B UMS 3 1_555 A A 22 1_555 B U 2 1_555 -0.180 -1.263 2.936 -1.866 6.896 34.438 -2.979 0.058 2.647 11.495 3.111 35.150 18 AA_A21A22:U2UMS3_BB A 21 ? B 3 ? A 22 ? B 2 ? 1 A A 22 1_555 B U 2 1_555 A G 23 1_555 B C 1 1_555 0.486 -1.451 3.419 6.622 13.457 31.776 -4.385 0.166 2.655 23.042 -11.339 35.055 19 AA_A22G23:C1U2_BB A 22 ? B 2 ? A 23 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 ;(2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R ,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMET HYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL ; LIV 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3C3Z _pdbx_initial_refinement_model.details ? #