HEADER SIGNALING PROTEIN 31-JAN-08 3C5H TITLE CRYSTAL STRUCTURE OF THE RAS HOMOLOG DOMAIN OF HUMAN GRLF1 TITLE 2 (P190RHOGAP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR DNA-BINDING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RAS HOMOLOG DOMAIN: RESIDUES 13-249; COMPND 5 SYNONYM: GLUCOCORTICOID RECEPTOR REPRESSION FACTOR 1, GRF-1, RHO GAP COMPND 6 P190A, P190-A; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRLF1, GRF1, KIAA1722; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS RAS, GTPASE, GLUCORTICOID RECEPTOR, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, ALTERNATIVE SPLICING, ANTI-ONCOGENE, CELL CYCLE, CYTOPLASM, KEYWDS 3 DNA-BINDING, GTPASE ACTIVATION, NUCLEUS, PHOSPHOPROTEIN, REPRESSOR, KEYWDS 4 TRANSCRIPTION, TRANSCRIPTION REGULATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.SHEN,Y.TONG,W.TEMPEL,F.MACKENZIE,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 21-FEB-24 3C5H 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3C5H 1 REMARK REVDAT 2 24-FEB-09 3C5H 1 VERSN REVDAT 1 12-FEB-08 3C5H 0 JRNL AUTH L.SHEN,Y.TONG,W.TEMPEL,F.MACKENZIE,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE RAS HOMOLOG DOMAIN OF HUMAN GRLF1 JRNL TITL 2 (P190RHOGAP). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 26626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1775 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.936 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1869 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1193 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2549 ; 1.465 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2938 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 6.285 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;33.331 ;25.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;11.656 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;25.159 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2076 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 364 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 352 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1235 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 916 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 915 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.027 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.284 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 18 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 2.720 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 477 ; 0.702 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1876 ; 3.601 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 785 ; 2.861 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 668 ; 3.899 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DUE TO CONSIDERABLE NON-ISOMORPHISM REMARK 3 BETWEEN THE PHASING AND REFINEMENT DATA SETS, A PRELIMINARY REMARK 3 MODEL OBTAINED BY THE PROGRAM 'RESOLVE' BASED ON THE PHASING REMARK 3 DATA WAS USED IN MOLECULAR REPLACEMENT WITH THE HIGHER REMARK 3 RESOLUTION REFINEMENT DATA AND THE PROGRAM 'PHASER'. FOLLOWING REMARK 3 DENSITY MODIFICATION WITH 'DM', 'ARP/WARP' WAS USED FOR REMARK 3 AUTOTRACING OF THE HIGHER RESOLUTION MODEL. HYDROGENS HAVE BEEN REMARK 3 ADDED IN THE RIDING POSITIONS DURING FINAL REFINEMENT. PROGRAMS, REMARK 3 ARP/WARP, COOT, MOLPROBITY HAVE ALSO BEEN USED IN REFINEMENT REMARK 4 REMARK 4 3C5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-07; 06-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 23-ID-B; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926; 0.97931, 0.97945, REMARK 200 0.98166, 0.97243 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; ADSC REMARK 200 QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.13, RESOLVE 2.13 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATIVE CRYSTAL, USED FOR MODEL REMARK 280 REFINEMENT: 26% PEG 4000, 0.1M TRIS-HCL, 0.2M MAGNESIUM CHLORIDE, REMARK 280 0.1MM DTT, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K. SELENO-METHIONINE DERIVATIVE CRYSTAL, USED FOR MAD PHASING: REMARK 280 33% PEG 4000, 0.1M TRIS-HCL, 0.2M MAGNESIUM CHLORIDE, 0.1MM DTT, REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K. A TEN- REMARK 280 FOLD EXCESS OF GPPNHP WAS ADDED TO THE PROTEIN SAMPLES PRIOR TO REMARK 280 CRYSTALLIZATION. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.47950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.47950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.65950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.47950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.47950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.65950 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.47950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.47950 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.65950 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 54.47950 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.47950 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.65950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 81 REMARK 465 SER A 82 REMARK 465 LEU A 83 REMARK 465 GLU A 84 REMARK 465 ASP A 85 REMARK 465 CYS A 86 REMARK 465 VAL A 87 REMARK 465 GLU A 88 REMARK 465 CYS A 89 REMARK 465 GLY A 169 REMARK 465 MET A 170 REMARK 465 ASN A 171 REMARK 465 ARG A 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 GLU A 25 CD OE1 OE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLN A 30 CG CD OE1 NE2 REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 109 CD NE CZ NH1 NH2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 GLN A 143 CG CD OE1 NE2 REMARK 470 ASP A 144 CG OD1 OD2 REMARK 470 LYS A 154 CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 ARG A 208 CD NE CZ NH1 NH2 REMARK 470 ARG A 211 CD NE CZ NH1 NH2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 ASN A 222 CG OD1 ND2 REMARK 470 ARG A 231 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 97 -153.89 -139.63 REMARK 500 LEU A 141 39.85 -149.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 36 OG REMARK 620 2 GLU A 95 OE2 83.6 REMARK 620 3 GNP A 301 O2G 175.4 91.8 REMARK 620 4 GNP A 301 O2B 95.8 95.4 84.7 REMARK 620 5 HOH A 389 O 92.1 174.9 92.5 82.4 REMARK 620 6 HOH A 390 O 93.7 94.3 86.6 167.2 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 312 O REMARK 620 2 HOH A 314 O 90.6 REMARK 620 3 HOH A 318 O 92.6 176.8 REMARK 620 4 HOH A 323 O 92.1 88.9 91.0 REMARK 620 5 HOH A 328 O 92.7 82.6 97.3 170.3 REMARK 620 6 HOH A 337 O 179.3 89.2 87.6 88.5 86.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 308 DBREF 3C5H A 13 249 UNP Q9NRY4 GRLF1_HUMAN 13 249 SEQADV 3C5H MET A -5 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A -4 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A -3 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A -2 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A -1 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A 0 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A 1 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H SER A 2 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H SER A 3 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H GLY A 4 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H ARG A 5 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H GLU A 6 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H ASN A 7 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H LEU A 8 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H TYR A 9 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H PHE A 10 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H GLN A 11 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H GLY A 12 UNP Q9NRY4 EXPRESSION TAG SEQRES 1 A 255 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 255 LEU TYR PHE GLN GLY THR TYR ASN ILE SER VAL VAL GLY SEQRES 3 A 255 LEU SER GLY THR GLU LYS GLU LYS GLY GLN CYS GLY ILE SEQRES 4 A 255 GLY LYS SER CYS LEU CYS ASN ARG PHE VAL ARG PRO SER SEQRES 5 A 255 ALA ASP GLU PHE HIS LEU ASP HIS THR SER VAL LEU SER SEQRES 6 A 255 THR SER ASP PHE GLY GLY ARG VAL VAL ASN ASN ASP HIS SEQRES 7 A 255 PHE LEU TYR TRP GLY GLU VAL SER ARG SER LEU GLU ASP SEQRES 8 A 255 CYS VAL GLU CYS LYS MET HIS ILE VAL GLU GLN THR GLU SEQRES 9 A 255 PHE ILE ASP ASP GLN THR PHE GLN PRO HIS ARG SER THR SEQRES 10 A 255 ALA LEU GLN PRO TYR ILE LYS ARG ALA ALA ALA THR LYS SEQRES 11 A 255 LEU ALA SER ALA GLU LYS LEU MET TYR PHE CYS THR ASP SEQRES 12 A 255 GLN LEU GLY LEU GLU GLN ASP PHE GLU GLN LYS GLN MET SEQRES 13 A 255 PRO ASP GLY LYS LEU LEU VAL ASP GLY PHE LEU LEU GLY SEQRES 14 A 255 ILE ASP VAL SER ARG GLY MET ASN ARG ASN PHE ASP ASP SEQRES 15 A 255 GLN LEU LYS PHE VAL SER ASN LEU TYR ASN GLN LEU ALA SEQRES 16 A 255 LYS THR LYS LYS PRO ILE VAL VAL VAL LEU THR LYS CYS SEQRES 17 A 255 ASP GLU GLY VAL GLU ARG TYR ILE ARG ASP ALA HIS THR SEQRES 18 A 255 PHE ALA LEU SER LYS LYS ASN LEU GLN VAL VAL GLU THR SEQRES 19 A 255 SER ALA ARG SER ASN VAL ASN VAL ASP LEU ALA PHE SER SEQRES 20 A 255 THR LEU VAL GLN LEU ILE ASP LYS HET MG A 302 1 HET MG A 303 1 HET GNP A 301 32 HET UNX A 304 1 HET UNX A 305 1 HET UNX A 306 1 HET UNX A 307 1 HET UNX A 308 1 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 MG 2(MG 2+) FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 UNX 5(X) FORMUL 10 HOH *96(H2 O) HELIX 1 1 GLY A 34 ARG A 44 1 11 HELIX 2 2 SER A 59 GLY A 64 1 6 HELIX 3 3 ARG A 109 LEU A 113 5 5 HELIX 4 4 PRO A 115 ALA A 121 1 7 HELIX 5 5 CYS A 135 LEU A 139 5 5 HELIX 6 6 LEU A 141 PHE A 145 5 5 HELIX 7 7 MET A 150 ASP A 152 5 3 HELIX 8 8 ASN A 173 THR A 191 1 19 HELIX 9 9 LYS A 201 GLY A 205 5 5 HELIX 10 10 VAL A 206 SER A 219 1 14 HELIX 11 11 ASN A 235 LYS A 249 1 15 SHEET 1 A 6 PHE A 73 VAL A 79 0 SHEET 2 A 6 MET A 91 GLN A 96 -1 O ILE A 93 N TRP A 76 SHEET 3 A 6 TYR A 14 GLY A 20 1 N VAL A 18 O VAL A 94 SHEET 4 A 6 GLY A 159 ASP A 165 1 O GLY A 163 N VAL A 19 SHEET 5 A 6 ILE A 195 THR A 200 1 O VAL A 196 N LEU A 162 SHEET 6 A 6 VAL A 225 GLU A 227 1 O VAL A 226 N VAL A 197 SHEET 1 B 2 VAL A 57 LEU A 58 0 SHEET 2 B 2 ILE A 100 ASP A 101 1 O ILE A 100 N LEU A 58 SHEET 1 C 2 LYS A 124 ALA A 126 0 SHEET 2 C 2 LYS A 154 LEU A 156 -1 O LEU A 155 N LEU A 125 LINK OG SER A 36 MG MG A 302 1555 1555 2.11 LINK OE2 GLU A 95 MG MG A 302 1555 1555 2.16 LINK O2G GNP A 301 MG MG A 302 1555 1555 1.99 LINK O2B GNP A 301 MG MG A 302 1555 1555 2.09 LINK MG MG A 302 O HOH A 389 1555 1555 2.16 LINK MG MG A 302 O HOH A 390 1555 1555 2.10 LINK MG MG A 303 O HOH A 312 1555 1555 2.12 LINK MG MG A 303 O HOH A 314 1555 1555 1.96 LINK MG MG A 303 O HOH A 318 1555 1555 1.97 LINK MG MG A 303 O HOH A 323 1555 1555 2.16 LINK MG MG A 303 O HOH A 328 1555 1555 2.11 LINK MG MG A 303 O HOH A 337 1555 1555 2.19 SITE 1 AC1 5 SER A 36 GLU A 95 GNP A 301 HOH A 389 SITE 2 AC1 5 HOH A 390 SITE 1 AC2 6 HOH A 312 HOH A 314 HOH A 318 HOH A 323 SITE 2 AC2 6 HOH A 328 HOH A 337 SITE 1 AC3 26 LYS A 28 GLY A 32 ILE A 33 GLY A 34 SITE 2 AC3 26 LYS A 35 SER A 36 CYS A 37 LEU A 52 SITE 3 AC3 26 ASP A 53 SER A 56 GLU A 95 THR A 97 SITE 4 AC3 26 LYS A 201 ASP A 203 SER A 229 ALA A 230 SITE 5 AC3 26 ARG A 231 MG A 302 HOH A 311 HOH A 316 SITE 6 AC3 26 HOH A 319 HOH A 389 HOH A 390 HOH A 394 SITE 7 AC3 26 HOH A 395 HOH A 396 SITE 1 AC4 2 TYR A 116 ILE A 117 SITE 1 AC5 3 VAL A 43 ARG A 44 MET A 132 SITE 1 AC6 3 ASN A 235 ASP A 237 LEU A 238 SITE 1 AC7 2 PHE A 42 ASP A 237 CRYST1 108.959 108.959 51.319 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019486 0.00000