HEADER ELECTRON TRANSPORT 02-FEB-08 3C63 TITLE TETRAMERIC CYTOCHROME CB562 (K34/H59/D62/H63/H73/A74/H77) ASSEMBLY TITLE 2 STABILIZED BY INTERPROTEIN ZINC COORDINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CYTOCHROME B-562; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 16-HELIX BUNDLE, INTERFACIAL ZN-COORDINATION, ELECTRON TRANSPORT, KEYWDS 2 HEME, IRON, METAL-BINDING, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR F.A.TEZCAN,E.N.SALGADO,R.A.LEWIS,J.FARAONE-MENNELLA REVDAT 7 30-AUG-23 3C63 1 REMARK REVDAT 6 20-OCT-21 3C63 1 REMARK SEQADV LINK REVDAT 5 07-MAR-18 3C63 1 REMARK REVDAT 4 13-JUL-11 3C63 1 VERSN REVDAT 3 24-FEB-09 3C63 1 VERSN REVDAT 2 08-JUL-08 3C63 1 JRNL REVDAT 1 06-MAY-08 3C63 0 JRNL AUTH E.N.SALGADO,R.A.LEWIS,J.FARAONE-MENNELLA,F.A.TEZCAN JRNL TITL METAL-MEDIATED SELF-ASSEMBLY OF PROTEIN SUPERSTRUCTURES: JRNL TITL 2 INFLUENCE OF SECONDARY INTERACTIONS ON PROTEIN JRNL TITL 3 OLIGOMERIZATION AND AGGREGATION. JRNL REF J.AM.CHEM.SOC. V. 130 6082 2008 JRNL REFN ISSN 0002-7863 JRNL PMID 18422313 JRNL DOI 10.1021/JA8012177 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 37193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2618 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 43 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 181 REMARK 3 SOLVENT ATOMS : 545 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42100 REMARK 3 B22 (A**2) : -0.28700 REMARK 3 B33 (A**2) : -0.13400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.081 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.525 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.302 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.310 ; 3.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 47.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19X.HEME REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE REMARK 4 REMARK 4 3C63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : SIEMENS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MICROCAPILLARY COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37193 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 2.760 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.14 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : 0.51000 REMARK 200 FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 400, 200 MM CACL2, 100 MM REMARK 280 TRIS, 1.25 MM ZNCL2, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.94950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -286.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 101 CAC HEM C 150 1.78 REMARK 500 OD1 ASP A 62 O HOH A 305 1.82 REMARK 500 SG CYS C 98 CAB HEM C 150 1.84 REMARK 500 SG CYS B 101 CAC HEM B 150 1.86 REMARK 500 SG CYS D 98 CAB HEM D 150 1.86 REMARK 500 SG CYS A 101 CAC HEM A 150 1.86 REMARK 500 SG CYS D 101 CAC HEM D 150 1.86 REMARK 500 SG CYS B 98 CAB HEM B 150 1.87 REMARK 500 SG CYS A 98 CAB HEM A 150 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 189 O HOH D 252 1454 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 108 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 4 OE1 REMARK 620 2 HEM A 150 O1A 89.1 REMARK 620 3 HEM A 150 O2A 86.1 49.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 7 SD REMARK 620 2 HEM A 150 NA 87.7 REMARK 620 3 HEM A 150 NB 86.1 88.9 REMARK 620 4 HEM A 150 NC 90.6 175.8 94.7 REMARK 620 5 HEM A 150 ND 89.7 90.7 175.8 85.5 REMARK 620 6 HIS A 102 NE2 176.9 89.3 93.2 92.5 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 NE2 REMARK 620 2 HIS C 63 NE2 111.4 REMARK 620 3 HIS D 73 NE2 108.7 110.7 REMARK 620 4 HIS D 77 NE2 109.2 109.8 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 NE2 REMARK 620 2 HIS B 73 NE2 110.0 REMARK 620 3 HIS B 77 NE2 116.6 105.8 REMARK 620 4 HIS C 59 NE2 105.4 114.5 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 73 NE2 REMARK 620 2 HIS A 77 NE2 108.1 REMARK 620 3 HIS B 63 NE2 108.0 118.3 REMARK 620 4 HIS D 59 NE2 114.2 106.4 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 109 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 2 OD1 REMARK 620 2 ASP B 2 OD2 50.0 REMARK 620 3 GLU B 4 OE2 132.1 84.9 REMARK 620 4 HOH B 233 O 112.4 85.8 73.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 7 SD REMARK 620 2 HEM B 150 NA 89.3 REMARK 620 3 HEM B 150 NB 84.4 89.1 REMARK 620 4 HEM B 150 NC 89.0 177.5 88.9 REMARK 620 5 HEM B 150 ND 91.9 91.7 176.2 90.3 REMARK 620 6 HIS B 102 NE2 176.0 88.3 92.3 93.2 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 108 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 12 OD1 REMARK 620 2 ASP B 12 OD2 46.0 REMARK 620 3 HOH B 264 O 76.1 108.1 REMARK 620 4 HOH B 282 O 140.9 160.8 67.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 59 NE2 REMARK 620 2 HIS C 73 NE2 114.6 REMARK 620 3 HIS C 77 NE2 113.9 104.4 REMARK 620 4 HIS D 63 NE2 103.4 103.4 117.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET C 7 SD REMARK 620 2 HEM C 150 NA 92.9 REMARK 620 3 HEM C 150 NB 87.1 89.4 REMARK 620 4 HEM C 150 NC 92.8 174.2 90.1 REMARK 620 5 HEM C 150 ND 94.9 92.0 177.5 88.4 REMARK 620 6 HIS C 102 NE2 177.7 85.0 91.8 89.2 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 108 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 4 OE1 REMARK 620 2 GLU D 4 OE2 48.4 REMARK 620 3 ASP D 5 OD1 109.7 75.0 REMARK 620 4 HOH D 259 O 84.1 131.8 140.7 REMARK 620 5 HOH D 366 O 94.5 114.3 71.7 70.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET D 7 SD REMARK 620 2 HEM D 150 NA 89.3 REMARK 620 3 HEM D 150 NB 82.9 87.8 REMARK 620 4 HEM D 150 NC 87.8 177.0 92.5 REMARK 620 5 HEM D 150 ND 92.9 88.6 174.5 90.9 REMARK 620 6 HIS D 102 NE2 174.3 88.7 91.6 94.3 92.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QLA RELATED DB: PDB REMARK 900 STRUCTURE OF A 16-HELIX BUNDLE ARCHITECTURE PRODUCED BY THE ZINC- REMARK 900 MEDIATED SELF ASSEMBLY OF FOUR CYTOCHROME CB562 MOLECULES REMARK 900 RELATED ID: 2BC5 RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI CYTOCHROME B562 WITH ENGINEERED C-TYPE HEME REMARK 900 LINKAGES REMARK 900 RELATED ID: 3C62 RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT MUTATION DBREF 3C63 A 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 3C63 B 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 3C63 C 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 3C63 D 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 3C63 LYS A 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 3C63 HIS A 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 3C63 ASP A 62 UNP P0ABE7 ARG 84 ENGINEERED MUTATION SEQADV 3C63 HIS A 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 3C63 ALA A 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 3C63 HIS A 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 3C63 CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 3C63 CYS A 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 3C63 LYS B 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 3C63 HIS B 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 3C63 ASP B 62 UNP P0ABE7 ARG 84 ENGINEERED MUTATION SEQADV 3C63 HIS B 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 3C63 ALA B 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 3C63 HIS B 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 3C63 CYS B 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 3C63 CYS B 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 3C63 LYS C 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 3C63 HIS C 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 3C63 ASP C 62 UNP P0ABE7 ARG 84 ENGINEERED MUTATION SEQADV 3C63 HIS C 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 3C63 ALA C 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 3C63 HIS C 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 3C63 CYS C 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 3C63 CYS C 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 3C63 LYS D 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 3C63 HIS D 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 3C63 ASP D 62 UNP P0ABE7 ARG 84 ENGINEERED MUTATION SEQADV 3C63 HIS D 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 3C63 ALA D 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 3C63 HIS D 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 3C63 CYS D 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 3C63 CYS D 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET LYS ALA ALA ALA LEU ASP SEQRES 4 A 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ASP SER PRO GLU MET HIS ASP PHE ASP HIS GLY PHE SEQRES 6 A 106 ASP ILE LEU VAL GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 A 106 TYR ARG SEQRES 1 B 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 B 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 B 106 LYS ASP ALA LEU THR LYS MET LYS ALA ALA ALA LEU ASP SEQRES 4 B 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 B 106 PRO ASP SER PRO GLU MET HIS ASP PHE ASP HIS GLY PHE SEQRES 6 B 106 ASP ILE LEU VAL GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 B 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 B 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 B 106 TYR ARG SEQRES 1 C 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 C 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 C 106 LYS ASP ALA LEU THR LYS MET LYS ALA ALA ALA LEU ASP SEQRES 4 C 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 C 106 PRO ASP SER PRO GLU MET HIS ASP PHE ASP HIS GLY PHE SEQRES 6 C 106 ASP ILE LEU VAL GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 C 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 C 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 C 106 TYR ARG SEQRES 1 D 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 D 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 D 106 LYS ASP ALA LEU THR LYS MET LYS ALA ALA ALA LEU ASP SEQRES 4 D 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 D 106 PRO ASP SER PRO GLU MET HIS ASP PHE ASP HIS GLY PHE SEQRES 6 D 106 ASP ILE LEU VAL GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 D 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 D 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 D 106 TYR ARG HET ZN A 107 1 HET CA A 108 1 HET HEM A 150 43 HET ZN B 107 1 HET CA B 108 1 HET CA B 109 1 HET CA B 110 1 HET HEM B 150 43 HET ZN C 107 1 HET HEM C 150 43 HET ZN D 107 1 HET CA D 108 1 HET HEM D 150 43 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 5 ZN 4(ZN 2+) FORMUL 6 CA 5(CA 2+) FORMUL 7 HEM 4(C34 H32 FE N4 O4) FORMUL 18 HOH *545(H2 O) HELIX 1 1 ASP A 2 ALA A 20 1 19 HELIX 2 2 ASN A 22 GLN A 41 1 20 HELIX 3 3 PRO A 45 GLU A 49 5 5 HELIX 4 4 SER A 55 GLU A 81 1 27 HELIX 5 5 LYS A 83 LEU A 94 1 12 HELIX 6 6 LEU A 94 ARG A 106 1 13 HELIX 7 7 ASP B 2 ALA B 20 1 19 HELIX 8 8 ASN B 22 GLN B 41 1 20 HELIX 9 9 PRO B 45 GLU B 49 5 5 HELIX 10 10 SER B 55 GLU B 81 1 27 HELIX 11 11 LYS B 83 LEU B 94 1 12 HELIX 12 12 LEU B 94 ARG B 106 1 13 HELIX 13 13 ASP C 2 ALA C 20 1 19 HELIX 14 14 ASN C 22 LYS C 42 1 21 HELIX 15 15 PRO C 45 GLU C 49 5 5 HELIX 16 16 SER C 55 GLU C 81 1 27 HELIX 17 17 LYS C 83 LEU C 94 1 12 HELIX 18 18 LEU C 94 ARG C 106 1 13 HELIX 19 19 ASP D 2 ALA D 20 1 19 HELIX 20 20 ASN D 22 GLN D 41 1 20 HELIX 21 21 PRO D 45 GLU D 49 5 5 HELIX 22 22 SER D 55 GLU D 81 1 27 HELIX 23 23 LYS D 83 LEU D 94 1 12 HELIX 24 24 LEU D 94 ARG D 106 1 13 LINK OE1 GLU A 4 CA CA A 108 1555 1555 2.63 LINK SD MET A 7 FE HEM A 150 1555 1555 2.33 LINK NE2 HIS A 59 ZN ZN D 107 1555 1555 2.06 LINK NE2 HIS A 63 ZN ZN B 107 1555 1555 1.99 LINK NE2 HIS A 73 ZN ZN A 107 1555 1555 1.99 LINK NE2 HIS A 77 ZN ZN A 107 1555 1555 1.98 LINK NE2 HIS A 102 FE HEM A 150 1555 1555 1.98 LINK ZN ZN A 107 NE2 HIS B 63 1555 1555 2.04 LINK ZN ZN A 107 NE2 HIS D 59 1555 1555 2.07 LINK CA CA A 108 O1A HEM A 150 1555 1555 2.69 LINK CA CA A 108 O2A HEM A 150 1555 1555 2.60 LINK OD1 ASP B 2 CA CA B 109 1555 1555 2.57 LINK OD2 ASP B 2 CA CA B 109 1555 1555 2.66 LINK OE2 GLU B 4 CA CA B 109 1555 1555 2.52 LINK SD MET B 7 FE HEM B 150 1555 1555 2.32 LINK OD1 ASP B 12 CA CA B 108 1555 1555 2.88 LINK OD2 ASP B 12 CA CA B 108 1555 1555 2.73 LINK NE2 HIS B 59 ZN ZN C 107 1555 1555 2.00 LINK NE2 HIS B 73 ZN ZN B 107 1555 1555 2.04 LINK NE2 HIS B 77 ZN ZN B 107 1555 1555 2.01 LINK NE2 HIS B 102 FE HEM B 150 1555 1555 2.07 LINK ZN ZN B 107 NE2 HIS C 59 1555 1555 2.04 LINK CA CA B 108 O HOH B 264 1555 1555 2.43 LINK CA CA B 108 O HOH B 282 1555 1555 2.87 LINK CA CA B 109 O HOH B 233 1555 1555 2.74 LINK SD MET C 7 FE HEM C 150 1555 1555 2.17 LINK NE2 HIS C 63 ZN ZN D 107 1555 1555 1.96 LINK NE2 HIS C 73 ZN ZN C 107 1555 1555 1.93 LINK NE2 HIS C 77 ZN ZN C 107 1555 1555 1.98 LINK NE2 HIS C 102 FE HEM C 150 1555 1555 2.08 LINK ZN ZN C 107 NE2 HIS D 63 1555 1555 2.08 LINK OE1 GLU D 4 CA CA D 108 1555 1555 2.52 LINK OE2 GLU D 4 CA CA D 108 1555 1555 2.78 LINK OD1 ASP D 5 CA CA D 108 1555 1555 2.49 LINK SD MET D 7 FE HEM D 150 1555 1555 2.33 LINK NE2 HIS D 73 ZN ZN D 107 1555 1555 2.08 LINK NE2 HIS D 77 ZN ZN D 107 1555 1555 2.00 LINK NE2 HIS D 102 FE HEM D 150 1555 1555 1.96 LINK CA CA D 108 O HOH D 259 1555 1555 2.92 LINK CA CA D 108 O HOH D 366 1555 1555 2.55 SITE 1 AC1 4 HIS A 73 HIS A 77 HIS B 63 HIS D 59 SITE 1 AC2 4 HIS A 59 HIS C 63 HIS D 73 HIS D 77 SITE 1 AC3 4 HIS A 63 HIS B 73 HIS B 77 HIS C 59 SITE 1 AC4 4 HIS B 59 HIS C 73 HIS C 77 HIS D 63 SITE 1 AC5 1 ASP B 12 SITE 1 AC6 2 ASP B 2 GLU B 4 SITE 1 AC7 1 GLU A 4 SITE 1 AC8 2 GLU D 4 ASP D 5 SITE 1 AC9 13 GLU A 4 MET A 7 LEU A 10 LEU A 14 SITE 2 AC9 13 PRO A 45 PRO A 46 PHE A 61 PHE A 65 SITE 3 AC9 13 CYS A 98 CYS A 101 HIS A 102 TYR A 105 SITE 4 AC9 13 ARG A 106 SITE 1 BC1 11 GLU B 4 MET B 7 LEU B 14 PRO B 46 SITE 2 BC1 11 PHE B 61 PHE B 65 CYS B 98 CYS B 101 SITE 3 BC1 11 HIS B 102 TYR B 105 ARG B 106 SITE 1 BC2 10 LEU C 3 GLU C 4 MET C 7 ASN C 11 SITE 2 BC2 10 PHE C 61 CYS C 98 CYS C 101 HIS C 102 SITE 3 BC2 10 TYR C 105 ARG C 106 SITE 1 BC3 10 MET D 7 GLU D 8 ASN D 11 PRO D 45 SITE 2 BC3 10 PHE D 61 CYS D 98 CYS D 101 HIS D 102 SITE 3 BC3 10 TYR D 105 ARG D 106 CRYST1 47.966 89.899 49.688 90.00 110.30 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020848 0.000000 0.007712 0.00000 SCALE2 0.000000 0.011124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021458 0.00000