HEADER METAL BINDING PROTEIN 05-FEB-08 3C6W TITLE CRYSTAL STRUCTURE OF THE ING5 PHD FINGER IN COMPLEX WITH H3K4ME3 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INHIBITOR OF GROWTH PROTEIN 5; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 184-236; COMPND 5 SYNONYM: P28ING5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: H3K4ME3 HISTONE PEPTIDE; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ING5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: SYNTHETIC H3K4ME3 HISTONE PEPTIDE KEYWDS CHROMATIN, PHD, ING, EPIGENETICS, HISTONE, ALTERNATIVE SPLICING, KEYWDS 2 METAL-BINDING, PHOSPHOPROTEIN, ZINC, ZINC-FINGER, METAL BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.S.CHAMPAGNE,P.V.PENA,K.JOHNSON,T.G.KUTATELADZE REVDAT 6 26-MAR-25 3C6W 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 3C6W 1 REMARK REVDAT 4 22-SEP-09 3C6W 1 TITLE REVDAT 3 24-FEB-09 3C6W 1 VERSN REVDAT 2 05-AUG-08 3C6W 1 JRNL REVDAT 1 03-JUN-08 3C6W 0 JRNL AUTH K.S.CHAMPAGNE,N.SAKSOUK,P.V.PENA,K.JOHNSON,M.ULLAH,X.J.YANG, JRNL AUTH 2 J.COTE,T.G.KUTATELADZE JRNL TITL THE CRYSTAL STRUCTURE OF THE ING5 PHD FINGER IN COMPLEX WITH JRNL TITL 2 AN H3K4ME3 HISTONE PEPTIDE. JRNL REF PROTEINS V. 72 1371 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18623064 JRNL DOI 10.1002/PROT.22140 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 12981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1888 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 975 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15900 REMARK 3 B22 (A**2) : 0.15900 REMARK 3 B33 (A**2) : -0.31800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 1.75 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.337 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.29 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.520 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2574, 1.28304, 1.28264 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13176 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.950 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.23 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM CITRATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 14.12500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.18750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 7.06250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOMOLECULE IS A MONOMER WITH A BOUND PEPTIDE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 178 REMARK 465 VAL A 179 REMARK 465 CYS A 180 REMARK 465 ARG A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 ASN A 184 REMARK 465 LYS A 236 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 GLY B 12 REMARK 465 LEU C 178 REMARK 465 VAL C 179 REMARK 465 CYS C 180 REMARK 465 ARG C 181 REMARK 465 GLY C 182 REMARK 465 SER C 183 REMARK 465 LYS C 236 REMARK 465 GLY D 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 226 O HOH A 267 1.90 REMARK 500 O HOH A 251 O HOH A 286 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 260 O HOH A 288 3554 0.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN C 184 O - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 186 150.81 -43.89 REMARK 500 CYS A 189 -176.99 65.99 REMARK 500 GLU A 210 -49.43 74.37 REMARK 500 CYS C 189 -178.95 67.64 REMARK 500 GLU C 210 -54.98 70.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN C 184 -24.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 CYS A 191 SG 115.8 REMARK 620 3 HIS A 213 ND1 97.5 92.5 REMARK 620 4 CYS A 216 SG 108.4 116.9 124.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 202 SG REMARK 620 2 CYS A 207 SG 110.3 REMARK 620 3 CYS A 229 SG 113.9 113.6 REMARK 620 4 CYS A 232 SG 107.7 106.2 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 189 SG REMARK 620 2 CYS C 191 SG 116.0 REMARK 620 3 CYS C 216 SG 108.8 116.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 202 SG REMARK 620 2 CYS C 207 SG 111.4 REMARK 620 3 CYS C 229 SG 114.4 112.3 REMARK 620 4 CYS C 232 SG 106.2 107.4 104.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 4 DBREF 3C6W A 184 236 UNP Q8WYH8 ING5_HUMAN 184 236 DBREF 3C6W C 184 236 UNP Q8WYH8 ING5_HUMAN 184 236 DBREF 3C6W B 1 12 PDB 3C6W 3C6W 1 12 DBREF 3C6W D 1 12 PDB 3C6W 3C6W 1 12 SEQADV 3C6W LEU A 178 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W VAL A 179 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W CYS A 180 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W ARG A 181 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W GLY A 182 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W SER A 183 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W LEU C 178 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W VAL C 179 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W CYS C 180 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W ARG C 181 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W GLY C 182 UNP Q8WYH8 EXPRESSION TAG SEQADV 3C6W SER C 183 UNP Q8WYH8 EXPRESSION TAG SEQRES 1 A 59 LEU VAL CYS ARG GLY SER ASN GLU PRO THR TYR CYS LEU SEQRES 2 A 59 CYS HIS GLN VAL SER TYR GLY GLU MET ILE GLY CYS ASP SEQRES 3 A 59 ASN PRO ASP CYS PRO ILE GLU TRP PHE HIS PHE ALA CYS SEQRES 4 A 59 VAL ASP LEU THR THR LYS PRO LYS GLY LYS TRP PHE CYS SEQRES 5 A 59 PRO ARG CYS VAL GLN GLU LYS SEQRES 1 B 12 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY SEQRES 1 C 59 LEU VAL CYS ARG GLY SER ASN GLU PRO THR TYR CYS LEU SEQRES 2 C 59 CYS HIS GLN VAL SER TYR GLY GLU MET ILE GLY CYS ASP SEQRES 3 C 59 ASN PRO ASP CYS PRO ILE GLU TRP PHE HIS PHE ALA CYS SEQRES 4 C 59 VAL ASP LEU THR THR LYS PRO LYS GLY LYS TRP PHE CYS SEQRES 5 C 59 PRO ARG CYS VAL GLN GLU LYS SEQRES 1 D 12 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY MODRES 3C6W M3L B 4 LYS N-TRIMETHYLLYSINE MODRES 3C6W M3L D 4 LYS N-TRIMETHYLLYSINE HET M3L B 4 12 HET M3L D 4 12 HET ZN A 1 1 HET ZN A 2 1 HET ZN C 3 1 HET ZN C 4 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION FORMUL 2 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *137(H2 O) HELIX 1 1 ALA A 215 ASP A 218 5 4 HELIX 2 2 CYS A 229 GLN A 234 1 6 HELIX 3 3 ALA C 215 ASP C 218 5 4 HELIX 4 4 CYS C 229 GLN C 234 1 6 SHEET 1 A 2 THR A 187 TYR A 188 0 SHEET 2 A 2 GLN A 193 VAL A 194 -1 O GLN A 193 N TYR A 188 SHEET 1 B 3 TRP A 211 HIS A 213 0 SHEET 2 B 3 GLU A 198 GLY A 201 -1 N ILE A 200 O PHE A 212 SHEET 3 B 3 THR B 3 GLN B 5 -1 O M3L B 4 N MET A 199 SHEET 1 C 3 TRP C 211 HIS C 213 0 SHEET 2 C 3 MET C 199 GLY C 201 -1 N ILE C 200 O PHE C 212 SHEET 3 C 3 ARG D 2 M3L D 4 -1 O ARG D 2 N GLY C 201 LINK C THR B 3 N M3L B 4 1555 1555 1.33 LINK C M3L B 4 N GLN B 5 1555 1555 1.33 LINK C THR D 3 N M3L D 4 1555 1555 1.33 LINK C M3L D 4 N GLN D 5 1555 1555 1.33 LINK ZN ZN A 1 SG CYS A 189 1555 1555 2.35 LINK ZN ZN A 1 SG CYS A 191 1555 1555 2.31 LINK ZN ZN A 1 ND1 HIS A 213 1555 1555 2.80 LINK ZN ZN A 1 SG CYS A 216 1555 1555 2.25 LINK ZN ZN A 2 SG CYS A 202 1555 1555 2.33 LINK ZN ZN A 2 SG CYS A 207 1555 1555 2.30 LINK ZN ZN A 2 SG CYS A 229 1555 1555 2.31 LINK ZN ZN A 2 SG CYS A 232 1555 1555 2.32 LINK ZN ZN C 3 SG CYS C 189 1555 1555 2.30 LINK ZN ZN C 3 SG CYS C 191 1555 1555 2.32 LINK ZN ZN C 3 SG CYS C 216 1555 1555 2.26 LINK ZN ZN C 4 SG CYS C 202 1555 1555 2.34 LINK ZN ZN C 4 SG CYS C 207 1555 1555 2.28 LINK ZN ZN C 4 SG CYS C 229 1555 1555 2.32 LINK ZN ZN C 4 SG CYS C 232 1555 1555 2.30 SITE 1 AC1 4 CYS A 189 CYS A 191 HIS A 213 CYS A 216 SITE 1 AC2 4 CYS A 202 CYS A 207 CYS A 229 CYS A 232 SITE 1 AC3 4 CYS C 189 CYS C 191 HIS C 213 CYS C 216 SITE 1 AC4 4 CYS C 202 CYS C 207 CYS C 229 CYS C 232 CRYST1 68.140 68.140 28.250 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014676 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035398 0.00000 TER 412 GLU A 235 HETATM 436 N M3L B 4 -3.045 22.107 14.158 1.00 16.70 N HETATM 437 CA M3L B 4 -3.422 23.452 13.747 1.00 19.72 C HETATM 438 CB M3L B 4 -2.755 23.860 12.430 1.00 19.71 C HETATM 439 CG M3L B 4 -3.286 23.091 11.217 1.00 19.98 C HETATM 440 CD M3L B 4 -2.633 23.489 9.894 1.00 22.34 C HETATM 441 CE M3L B 4 -3.008 22.524 8.762 1.00 24.04 C HETATM 442 NZ M3L B 4 -2.936 23.128 7.364 1.00 25.12 N HETATM 443 C M3L B 4 -4.935 23.511 13.610 1.00 21.74 C HETATM 444 O M3L B 4 -5.585 22.505 13.322 1.00 20.60 O HETATM 445 CM1 M3L B 4 -1.529 23.485 7.011 1.00 24.50 C HETATM 446 CM2 M3L B 4 -3.696 24.395 7.113 1.00 25.80 C HETATM 447 CM3 M3L B 4 -3.411 22.123 6.370 1.00 26.28 C TER 469 ALA B 7 TER 889 GLU C 235 HETATM 913 N M3L D 4 19.353 17.304 7.205 1.00 13.53 N HETATM 914 CA M3L D 4 18.203 16.543 7.656 1.00 12.95 C HETATM 915 CB M3L D 4 18.346 16.031 9.091 1.00 14.16 C HETATM 916 CG M3L D 4 18.235 17.125 10.144 1.00 12.97 C HETATM 917 CD M3L D 4 18.374 16.611 11.571 1.00 15.24 C HETATM 918 CE M3L D 4 18.627 17.763 12.540 1.00 14.05 C HETATM 919 NZ M3L D 4 18.503 17.402 14.008 1.00 12.37 N HETATM 920 C M3L D 4 16.977 17.433 7.492 1.00 13.72 C HETATM 921 O M3L D 4 17.071 18.663 7.572 1.00 13.41 O HETATM 922 CM1 M3L D 4 19.544 16.415 14.410 1.00 10.42 C HETATM 923 CM2 M3L D 4 17.219 16.774 14.465 1.00 11.53 C HETATM 924 CM3 M3L D 4 18.711 18.637 14.818 1.00 12.39 C TER 979 THR D 11 HETATM 980 ZN ZN A 1 -9.619 13.407 6.529 1.00 15.90 ZN HETATM 981 ZN ZN A 2 2.841 10.302 7.095 1.00 15.27 ZN HETATM 982 ZN ZN C 3 18.780 28.398 14.304 1.00 16.81 ZN HETATM 983 ZN ZN C 4 30.828 23.881 14.002 1.00 17.32 ZN HETATM 984 O HOH A 27 3.174 18.054 8.921 1.00 14.13 O HETATM 985 O HOH A 237 4.898 15.472 7.085 1.00 12.82 O HETATM 986 O HOH A 238 -4.106 13.940 0.736 1.00 14.69 O HETATM 987 O HOH A 239 -13.336 14.335 5.377 1.00 12.24 O HETATM 988 O HOH A 240 8.633 17.457 12.942 1.00 13.90 O HETATM 989 O HOH A 241 -13.201 18.876 0.095 1.00 11.98 O HETATM 990 O HOH A 242 2.961 15.823 14.931 1.00 13.37 O HETATM 991 O HOH A 243 10.071 15.633 11.442 1.00 13.07 O HETATM 992 O HOH A 244 11.357 8.428 2.683 1.00 15.37 O HETATM 993 O HOH A 245 -10.548 18.034 11.486 1.00 15.51 O HETATM 994 O HOH A 246 -0.704 6.303 12.920 1.00 15.53 O HETATM 995 O HOH A 247 8.674 8.049 3.446 1.00 19.09 O HETATM 996 O HOH A 248 -5.307 15.060 -1.492 1.00 16.33 O HETATM 997 O HOH A 249 -11.875 15.746 12.087 1.00 17.04 O HETATM 998 O HOH A 250 7.456 9.135 1.329 1.00 29.97 O HETATM 999 O HOH A 251 14.223 13.780 3.808 1.00 23.59 O HETATM 1000 O HOH A 252 -12.856 8.637 14.089 1.00 23.71 O HETATM 1001 O HOH A 253 -11.278 14.738 -3.293 1.00 23.26 O HETATM 1002 O HOH A 254 -12.709 13.988 9.684 1.00 19.50 O HETATM 1003 O HOH A 255 6.640 15.710 2.277 1.00 30.51 O HETATM 1004 O HOH A 256 -7.803 23.258 2.360 1.00 21.19 O HETATM 1005 O HOH A 257 2.262 7.667 15.625 1.00 24.71 O HETATM 1006 O HOH A 258 1.464 6.494 0.393 1.00 38.87 O HETATM 1007 O HOH A 259 5.830 17.663 5.954 1.00 22.44 O HETATM 1008 O HOH A 260 -6.125 7.875 0.509 1.00 35.87 O HETATM 1009 O HOH A 261 -3.722 -0.859 5.329 1.00 25.41 O HETATM 1010 O HOH A 262 -7.216 6.146 10.531 1.00 26.56 O HETATM 1011 O HOH A 263 -7.934 10.972 21.190 1.00 23.96 O HETATM 1012 O HOH A 264 -10.459 21.364 -3.580 1.00 34.07 O HETATM 1013 O HOH A 265 -3.256 7.216 13.256 1.00 26.17 O HETATM 1014 O HOH A 266 4.092 5.820 15.922 1.00 31.05 O HETATM 1015 O HOH A 267 10.163 17.815 15.016 1.00 30.74 O HETATM 1016 O HOH A 268 -11.887 19.369 14.770 1.00 26.54 O HETATM 1017 O HOH A 269 -10.646 9.403 19.927 1.00 30.16 O HETATM 1018 O HOH A 270 -12.399 19.436 -2.509 1.00 27.18 O HETATM 1019 O HOH A 271 -4.224 13.472 24.291 1.00 32.45 O HETATM 1020 O HOH A 272 -15.488 15.307 3.984 1.00 24.35 O HETATM 1021 O HOH A 273 -5.377 5.804 12.503 1.00 26.23 O HETATM 1022 O HOH A 274 -8.505 18.209 20.606 1.00 54.01 O HETATM 1023 O HOH A 275 -2.204 16.080 1.451 1.00 21.94 O HETATM 1024 O HOH A 276 1.722 2.508 3.891 1.00 28.14 O HETATM 1025 O HOH A 277 -9.720 19.020 -5.321 1.00 36.79 O HETATM 1026 O HOH A 278 -1.912 18.851 0.060 1.00 34.76 O HETATM 1027 O HOH A 279 -11.642 17.169 -4.446 1.00 34.65 O HETATM 1028 O HOH A 280 6.093 16.840 16.486 1.00 30.52 O HETATM 1029 O HOH A 281 -4.133 19.504 -3.116 1.00 25.34 O HETATM 1030 O HOH A 282 -15.033 12.657 3.994 1.00 29.41 O HETATM 1031 O HOH A 283 11.197 15.556 2.066 1.00 40.37 O HETATM 1032 O HOH A 284 -12.902 24.512 9.922 1.00 32.78 O HETATM 1033 O HOH A 285 -4.932 11.594 21.380 1.00 37.87 O HETATM 1034 O HOH A 286 13.082 15.473 3.506 1.00 50.66 O HETATM 1035 O HOH A 287 15.788 14.851 1.824 1.00 45.30 O HETATM 1036 O HOH A 288 7.807 6.045 7.644 1.00 64.00 O HETATM 1037 O HOH A 289 -12.696 24.601 5.406 1.00 34.66 O HETATM 1038 O HOH A 290 -5.665 24.770 3.291 1.00 37.24 O HETATM 1039 O HOH A 291 3.349 21.596 6.404 1.00 33.61 O HETATM 1040 O HOH A 292 -13.973 16.211 13.539 1.00 36.56 O HETATM 1041 O HOH A 293 8.620 17.614 1.579 1.00 60.11 O HETATM 1042 O HOH A 294 11.069 5.203 2.864 1.00 50.70 O HETATM 1043 O HOH A 295 -3.783 8.454 15.483 1.00 36.81 O HETATM 1044 O HOH B 26 3.976 22.486 12.409 1.00 19.13 O HETATM 1045 O HOH B 121 -3.764 26.698 14.565 1.00 39.09 O HETATM 1046 O HOH C 237 22.596 24.761 20.294 1.00 13.87 O HETATM 1047 O HOH C 238 14.196 19.609 18.436 1.00 16.62 O HETATM 1048 O HOH C 239 27.795 19.244 6.270 1.00 18.08 O HETATM 1049 O HOH C 240 15.535 25.334 9.231 1.00 12.84 O HETATM 1050 O HOH C 241 10.680 20.075 16.248 1.00 16.81 O HETATM 1051 O HOH C 242 39.786 16.322 17.010 1.00 20.55 O HETATM 1052 O HOH C 243 20.539 29.342 -2.938 1.00 17.15 O HETATM 1053 O HOH C 244 15.875 27.884 8.460 1.00 16.89 O HETATM 1054 O HOH C 245 23.110 22.296 19.411 1.00 18.04 O HETATM 1055 O HOH C 246 30.137 29.198 8.199 1.00 19.30 O HETATM 1056 O HOH C 247 26.590 32.432 8.450 1.00 23.06 O HETATM 1057 O HOH C 248 29.467 18.291 14.142 1.00 19.51 O HETATM 1058 O HOH C 249 25.145 32.944 10.782 1.00 22.06 O HETATM 1059 O HOH C 250 15.271 30.073 15.000 1.00 18.46 O HETATM 1060 O HOH C 251 20.816 24.524 22.379 1.00 18.21 O HETATM 1061 O HOH C 252 19.209 34.228 6.936 1.00 20.56 O HETATM 1062 O HOH C 253 16.089 29.780 10.884 1.00 21.24 O HETATM 1063 O HOH C 254 36.916 22.497 17.538 1.00 20.21 O HETATM 1064 O HOH C 255 16.802 23.919 0.170 1.00 26.31 O HETATM 1065 O HOH C 256 37.316 24.545 13.496 1.00 24.17 O HETATM 1066 O HOH C 257 31.051 16.271 11.837 1.00 23.82 O HETATM 1067 O HOH C 258 29.864 16.733 4.391 1.00 27.26 O HETATM 1068 O HOH C 259 31.676 26.377 5.646 1.00 25.56 O HETATM 1069 O HOH C 260 14.069 25.205 5.856 1.00 19.64 O HETATM 1070 O HOH C 261 12.301 22.743 23.907 1.00 31.56 O HETATM 1071 O HOH C 262 34.536 16.110 8.549 1.00 24.27 O HETATM 1072 O HOH C 263 21.915 20.334 20.718 1.00 35.74 O HETATM 1073 O HOH C 264 23.062 37.391 7.408 1.00 27.81 O HETATM 1074 O HOH C 265 15.599 21.368 25.498 1.00 31.31 O HETATM 1075 O HOH C 266 35.180 22.378 19.535 1.00 33.74 O HETATM 1076 O HOH C 267 34.253 27.106 5.391 1.00 21.24 O HETATM 1077 O HOH C 268 27.695 29.920 7.853 1.00 28.70 O HETATM 1078 O HOH C 269 12.262 26.415 20.324 1.00 21.28 O HETATM 1079 O HOH C 270 22.111 29.120 -0.110 1.00 32.21 O HETATM 1080 O HOH C 271 14.049 31.979 16.717 1.00 38.24 O HETATM 1081 O HOH C 272 41.561 14.418 18.063 1.00 43.65 O HETATM 1082 O HOH C 273 37.401 14.254 16.646 1.00 38.23 O HETATM 1083 O HOH C 274 16.451 29.024 4.113 1.00 30.24 O HETATM 1084 O HOH C 275 26.775 28.943 5.643 1.00 25.62 O HETATM 1085 O HOH C 276 23.126 25.067 -3.216 1.00 37.88 O HETATM 1086 O HOH C 277 16.004 15.845 18.625 1.00 34.70 O HETATM 1087 O HOH C 278 31.456 31.646 8.791 1.00 28.45 O HETATM 1088 O HOH C 279 14.818 27.966 5.997 1.00 35.16 O HETATM 1089 O HOH C 280 42.456 12.679 16.140 1.00 40.56 O HETATM 1090 O HOH C 281 34.415 30.846 17.247 1.00 32.41 O HETATM 1091 O HOH C 282 40.510 32.133 14.111 1.00 42.87 O HETATM 1092 O HOH C 283 20.371 15.280 18.898 1.00 35.88 O HETATM 1093 O HOH C 284 18.840 22.360 -0.583 1.00 28.52 O HETATM 1094 O HOH C 285 18.810 20.578 1.520 1.00 43.34 O HETATM 1095 O HOH C 286 24.625 35.329 9.574 1.00 40.33 O HETATM 1096 O HOH C 287 13.443 29.218 7.975 1.00 41.05 O HETATM 1097 O HOH C 288 18.390 18.027 -2.472 1.00 50.94 O HETATM 1098 O HOH C 289 29.948 17.400 17.126 1.00 46.41 O HETATM 1099 O HOH C 290 24.508 26.736 -0.278 1.00 29.42 O HETATM 1100 O HOH C 291 18.201 21.868 24.971 1.00 34.64 O HETATM 1101 O HOH C 292 21.751 22.651 24.049 1.00 42.04 O HETATM 1102 O HOH C 293 31.651 15.253 8.679 1.00 43.48 O HETATM 1103 O HOH C 294 24.461 14.170 14.664 1.00 37.92 O HETATM 1104 O HOH D 22 4.846 19.736 7.611 1.00 21.61 O HETATM 1105 O HOH D 43 12.744 20.074 5.891 1.00 22.09 O HETATM 1106 O HOH D 58 22.500 14.234 4.565 1.00 23.47 O HETATM 1107 O HOH D 69 11.494 22.485 4.931 1.00 37.13 O HETATM 1108 O HOH D 70 13.370 16.763 14.447 1.00 21.41 O HETATM 1109 O HOH D 87 25.223 13.183 9.410 1.00 31.87 O HETATM 1110 O HOH D 91 14.925 17.709 12.330 1.00 27.24 O HETATM 1111 O HOH D 93 1.095 22.275 17.328 1.00 33.19 O HETATM 1112 O HOH D 100 14.255 15.633 16.630 1.00 43.91 O HETATM 1113 O HOH D 102 3.730 22.289 18.205 1.00 48.79 O HETATM 1114 O HOH D 105 8.319 18.052 4.973 1.00 30.50 O HETATM 1115 O HOH D 106 4.838 23.471 10.303 1.00 31.24 O HETATM 1116 O HOH D 110 18.074 16.332 4.062 1.00 30.36 O HETATM 1117 O HOH D 111 24.621 12.495 4.928 1.00 38.23 O HETATM 1118 O HOH D 113 22.756 16.572 1.973 1.00 35.26 O HETATM 1119 O HOH D 131 10.489 29.586 13.532 1.00 47.17 O HETATM 1120 O HOH D 137 11.147 18.001 3.663 1.00 41.84 O CONECT 41 980 CONECT 55 980 CONECT 138 981 CONECT 175 981 CONECT 231 980 CONECT 256 980 CONECT 362 981 CONECT 386 981 CONECT 431 436 CONECT 436 431 437 CONECT 437 436 438 443 CONECT 438 437 439 CONECT 439 438 440 CONECT 440 439 441 CONECT 441 440 442 CONECT 442 441 445 446 447 CONECT 443 437 444 448 CONECT 444 443 CONECT 445 442 CONECT 446 442 CONECT 447 442 CONECT 448 443 CONECT 518 982 CONECT 532 982 CONECT 615 983 CONECT 652 983 CONECT 733 982 CONECT 839 983 CONECT 863 983 CONECT 908 913 CONECT 913 908 914 CONECT 914 913 915 920 CONECT 915 914 916 CONECT 916 915 917 CONECT 917 916 918 CONECT 918 917 919 CONECT 919 918 922 923 924 CONECT 920 914 921 925 CONECT 921 920 CONECT 922 919 CONECT 923 919 CONECT 924 919 CONECT 925 920 CONECT 980 41 55 231 256 CONECT 981 138 175 362 386 CONECT 982 518 532 733 CONECT 983 615 652 839 863 MASTER 391 0 6 4 8 0 4 6 1116 4 47 12 END