HEADER LYASE 06-FEB-08 3C6X TITLE HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYNITRILASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (S)-ACETONE-CYANOHYDRIN LYASE, (S)-HYDROXYNITRILE LYASE, COMPND 5 OXYNITRILASE; COMPND 6 EC: 4.1.2.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEVEA BRASILIENSIS; SOURCE 3 ORGANISM_COMMON: PARA RUBBER TREE; SOURCE 4 ORGANISM_TAXID: 3981; SOURCE 5 GENE: HNL; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BHIL-D2 KEYWDS ATOMIC RESOLUTION, HYDROXYNITRIL LYASE, CATALYSIS, PROTONATION STATE, KEYWDS 2 AB INITIO CALCULATIONS, SUBSTRATE BINDING, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHMIDT REVDAT 5 01-NOV-23 3C6X 1 REMARK LINK REVDAT 4 25-OCT-17 3C6X 1 REMARK REVDAT 3 24-FEB-09 3C6X 1 VERSN REVDAT 2 12-AUG-08 3C6X 1 JRNL REVDAT 1 03-JUN-08 3C6X 0 JRNL AUTH A.SCHMIDT,K.GRUBER,C.KRATKY,V.S.LAMZIN JRNL TITL ATOMIC RESOLUTION CRYSTAL STRUCTURES AND QUANTUM CHEMISTRY JRNL TITL 2 MEET TO REVEAL SUBTLETIES OF HYDROXYNITRILE LYASE CATALYSIS JRNL REF J.BIOL.CHEM. V. 283 21827 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18524775 JRNL DOI 10.1074/JBC.M801056200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ZUEGG,K.GRUBER,M.GUGGANIG,U.G.WAGNER,C.KRATKY REMARK 1 TITL THREE-DIMENSIONAL STRUCTURES OF ENZYME-SUBSTRATE COMPLEXES REMARK 1 TITL 2 OF THE HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS REMARK 1 REF PROTEIN SCI. V. 8 1990 1999 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 10548044 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.GRUBER,M.GUGGANIG,U.G.WAGNER,C.KRATKY REMARK 1 TITL ATOMIC RESOLUTION CRYSTAL STRUCTURE OF HYDROXYNITRILE LYASE REMARK 1 TITL 2 FROM HEVEA BRASILIENSIS REMARK 1 REF BIOL.CHEM. V. 380 993 1999 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 10494852 REMARK 1 DOI 10.1515/BC.1999.123 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.106 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.106 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 145064 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.100 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 129836 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 604 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2655.9 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2000.6 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 44 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 25692 REMARK 3 NUMBER OF RESTRAINTS : 31734 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.027 REMARK 3 ANGLE DISTANCES (A) : 0.034 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.031 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.092 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.100 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.126 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.042 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.107 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FULL ANISOTROPIC REFINEMENT APPLIED REMARK 4 REMARK 4 3C6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8430 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO REMARK 200 SOFTWARE USED: REFMAC (RIGID BODY) REMARK 200 STARTING MODEL: PDB ENTRY 1QJ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG400, 2M AMMONIUM SULPHATE, 0.1M REMARK 280 HEPES-NA, PH7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.62550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.17150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.62550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.17150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.11000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.62550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.17150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.11000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.62550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.17150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 106.34300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2274 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2275 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2276 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2281 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2479 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3036 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 170 O HOH A 2060 1.59 REMARK 500 O PRO A 45 O HOH A 2544 2.18 REMARK 500 OH TYR A 116 O3 SO4 A 1005 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 45 C ARG A 46 N 0.214 REMARK 500 CYS A 94 CB CYS A 94 SG -0.116 REMARK 500 CYS A 94 CB CYS A 94 SG -0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 44 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP A 44 O - C - N ANGL. DEV. = -14.7 DEGREES REMARK 500 PRO A 45 C - N - CA ANGL. DEV. = 42.3 DEGREES REMARK 500 PRO A 45 C - N - CD ANGL. DEV. = -47.5 DEGREES REMARK 500 PRO A 45 CA - C - O ANGL. DEV. = 15.8 DEGREES REMARK 500 PRO A 45 CA - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG A 46 C - N - CA ANGL. DEV. = -17.1 DEGREES REMARK 500 GLU A 56 OE1 - CD - OE2 ANGL. DEV. = 9.5 DEGREES REMARK 500 PHE A 64 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 CYS A 94 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 TYR A 116 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 116 CG - CD1 - CE1 ANGL. DEV. = -5.2 DEGREES REMARK 500 GLY A 162 C - N - CA ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 GLU A 220 OE1 - CD - OE2 ANGL. DEV. = -9.1 DEGREES REMARK 500 GLU A 247 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 80 -114.51 49.64 REMARK 500 ASN A 104 53.36 39.57 REMARK 500 LYS A 129 -122.07 63.62 REMARK 500 ILE A 209 -50.25 -124.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 44 PRO A 45 -148.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 44 -19.57 REMARK 500 PRO A 45 10.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QJ4 RELATED DB: PDB REMARK 900 HNL AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 7YAS RELATED DB: PDB REMARK 900 HNL LOW TEMPERATURE NATIVE STRUCTURE REMARK 900 RELATED ID: 3C6Y RELATED DB: PDB REMARK 900 HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION, COMPLEX WITH REMARK 900 ACETONE REMARK 900 RELATED ID: 3C6Z RELATED DB: PDB REMARK 900 HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION, COMPLEX WITH REMARK 900 ISOPROPANOL REMARK 900 RELATED ID: 3C70 RELATED DB: PDB REMARK 900 HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION, COMPLEX WITH REMARK 900 RHODANIDE (SCN) DBREF 3C6X A 1 257 UNP P52704 HNL_HEVBR 1 257 SEQRES 1 A 257 MET ALA PHE ALA HIS PHE VAL LEU ILE HIS THR ILE CYS SEQRES 2 A 257 HIS GLY ALA TRP ILE TRP HIS LYS LEU LYS PRO LEU LEU SEQRES 3 A 257 GLU ALA LEU GLY HIS LYS VAL THR ALA LEU ASP LEU ALA SEQRES 4 A 257 ALA SER GLY VAL ASP PRO ARG GLN ILE GLU GLU ILE GLY SEQRES 5 A 257 SER PHE ASP GLU TYR SER GLU PRO LEU LEU THR PHE LEU SEQRES 6 A 257 GLU ALA LEU PRO PRO GLY GLU LYS VAL ILE LEU VAL GLY SEQRES 7 A 257 GLU SER CYS GLY GLY LEU ASN ILE ALA ILE ALA ALA ASP SEQRES 8 A 257 LYS TYR CYS GLU LYS ILE ALA ALA ALA VAL PHE HIS ASN SEQRES 9 A 257 SER VAL LEU PRO ASP THR GLU HIS CYS PRO SER TYR VAL SEQRES 10 A 257 VAL ASP LYS LEU MET GLU VAL PHE PRO ASP TRP LYS ASP SEQRES 11 A 257 THR THR TYR PHE THR TYR THR LYS ASP GLY LYS GLU ILE SEQRES 12 A 257 THR GLY LEU LYS LEU GLY PHE THR LEU LEU ARG GLU ASN SEQRES 13 A 257 LEU TYR THR LEU CYS GLY PRO GLU GLU TYR GLU LEU ALA SEQRES 14 A 257 LYS MET LEU THR ARG LYS GLY SER LEU PHE GLN ASN ILE SEQRES 15 A 257 LEU ALA LYS ARG PRO PHE PHE THR LYS GLU GLY TYR GLY SEQRES 16 A 257 SER ILE LYS LYS ILE TYR VAL TRP THR ASP GLN ASP GLU SEQRES 17 A 257 ILE PHE LEU PRO GLU PHE GLN LEU TRP GLN ILE GLU ASN SEQRES 18 A 257 TYR LYS PRO ASP LYS VAL TYR LYS VAL GLU GLY GLY ASP SEQRES 19 A 257 HIS LYS LEU GLN LEU THR LYS THR LYS GLU ILE ALA GLU SEQRES 20 A 257 ILE LEU GLN GLU VAL ALA ASP THR TYR ASN HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET BME A1006 4 HET PEG A1501 7 HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 BME C2 H6 O S FORMUL 8 PEG C4 H10 O3 FORMUL 9 HOH *604(H2 O) HELIX 1 1 GLY A 15 HIS A 20 5 6 HELIX 2 2 LYS A 21 LEU A 29 1 9 HELIX 3 3 GLN A 47 ILE A 51 5 5 HELIX 4 4 SER A 53 SER A 58 1 6 HELIX 5 5 SER A 58 ALA A 67 1 10 HELIX 6 6 CYS A 81 CYS A 94 1 14 HELIX 7 7 SER A 115 PHE A 125 1 11 HELIX 8 8 GLY A 149 LEU A 157 1 9 HELIX 9 9 GLY A 162 THR A 173 1 12 HELIX 10 10 PHE A 179 ARG A 186 1 8 HELIX 11 11 GLY A 193 ILE A 197 5 5 HELIX 12 12 LEU A 211 TYR A 222 1 12 HELIX 13 13 LYS A 236 LYS A 241 1 6 HELIX 14 14 LYS A 241 TYR A 256 1 16 SHEET 1 A 6 LYS A 32 LEU A 36 0 SHEET 2 A 6 HIS A 5 ILE A 9 1 N LEU A 8 O THR A 34 SHEET 3 A 6 VAL A 74 SER A 80 1 O VAL A 77 N ILE A 9 SHEET 4 A 6 ILE A 97 SER A 105 1 O VAL A 101 N LEU A 76 SHEET 5 A 6 LYS A 199 TRP A 203 1 O VAL A 202 N PHE A 102 SHEET 6 A 6 LYS A 226 LYS A 229 1 O LYS A 226 N TYR A 201 SHEET 1 B 2 THR A 132 LYS A 138 0 SHEET 2 B 2 LYS A 141 LYS A 147 -1 O ILE A 143 N TYR A 136 LINK SG ACYS A 94 S2 BBME A1006 1555 1555 2.45 SITE 1 AC1 10 LYS A 23 LYS A 170 HOH A2030 HOH A2044 SITE 2 AC1 10 HOH A2123 HOH A2155 HOH A2286 HOH A2455 SITE 3 AC1 10 HOH A3040 HOH A3056 SITE 1 AC2 12 THR A 137 LYS A 138 ASP A 139 GLY A 140 SITE 2 AC2 12 GLY A 232 GLY A 233 LYS A 241 HOH A2208 SITE 3 AC2 12 HOH A2243 HOH A2320 HOH A2383 HOH A2386 SITE 1 AC3 5 THR A 110 GLY A 195 TYR A 222 HOH A2212 SITE 2 AC3 5 HOH A2454 SITE 1 AC4 6 LYS A 141 ASN A 181 LYS A 185 HOH A2086 SITE 2 AC4 6 HOH A2126 HOH A2152 SITE 1 AC5 9 TYR A 116 TRP A 217 LYS A 229 HOH A2090 SITE 2 AC5 9 HOH A2297 HOH A2400 HOH A2445 HOH A3028 SITE 3 AC5 9 HOH A4014 SITE 1 AC6 2 CYS A 94 GLU A 95 SITE 1 AC7 7 GLN A 47 LYS A 147 ARG A 174 LYS A 175 SITE 2 AC7 7 HOH A2147 HOH A2287 HOH A2417 CRYST1 47.251 106.343 128.220 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021164 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007799 0.00000