HEADER HYDROLASE 11-FEB-08 3C87 TITLE CRYSTAL STRUCTURE OF THE ENTEROBACTIN ESTERASE FES FROM SHIGELLA TITLE 2 FLEXNERI IN THE PRESENCE OF ENTEROBACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENTEROCHELIN ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 2A STR. 2457T; SOURCE 3 ORGANISM_TAXID: 198215; SOURCE 4 STRAIN: 2457T / SEROTYPE 2A; SOURCE 5 ATCC: 700930; SOURCE 6 GENE: FES, S0503, SF0497; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS SIDEROPHORE, IROD, ALPHA-BETA-ALPHA SANDWICH, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,R.ABERGEL,K.RAYMOND,D.HOLZLE,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-JUL-11 3C87 1 VERSN REVDAT 3 09-JUN-09 3C87 1 REMARK TITLE REVDAT 2 24-FEB-09 3C87 1 VERSN REVDAT 1 26-FEB-08 3C87 0 JRNL AUTH Y.KIM,N.MALTSEVA,R.ABERGEL,K.RAYMOND,D.HOLZLE,A.JOACHIMIAK JRNL TITL SIDEROPHORE MEDIATED IRON ACQUISITION: STRUCTURE AND JRNL TITL 2 SPECIFICITY OF ENTEROBACTIN ESTERASE FROM SHIGELLA FLEXNERI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 41249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.702 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6607 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9034 ; 1.624 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 795 ; 6.561 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 323 ;36.741 ;23.622 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1050 ;17.006 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;16.709 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 931 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5190 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2850 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4364 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 314 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.000 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3945 ; 1.004 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6377 ; 1.883 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2909 ; 2.793 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2657 ; 4.277 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 396 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0198 53.0228 17.6294 REMARK 3 T TENSOR REMARK 3 T11: -0.0998 T22: -0.0813 REMARK 3 T33: -0.1278 T12: -0.0580 REMARK 3 T13: -0.0014 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.6195 L22: 1.9945 REMARK 3 L33: 0.8697 L12: -0.4676 REMARK 3 L13: 0.2891 L23: -0.3277 REMARK 3 S TENSOR REMARK 3 S11: 0.1048 S12: -0.0145 S13: -0.0193 REMARK 3 S21: 0.0534 S22: -0.1213 S23: -0.0267 REMARK 3 S31: -0.0744 S32: 0.0768 S33: 0.0165 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 396 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1008 53.8797 53.6496 REMARK 3 T TENSOR REMARK 3 T11: -0.1245 T22: -0.0678 REMARK 3 T33: -0.0881 T12: -0.0131 REMARK 3 T13: 0.0059 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.7572 L22: 1.9091 REMARK 3 L33: 0.8418 L12: 0.7186 REMARK 3 L13: 0.2274 L23: -0.1199 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.0321 S13: 0.0482 REMARK 3 S21: -0.1300 S22: 0.0854 S23: 0.0604 REMARK 3 S31: 0.1102 S32: -0.0808 S33: -0.0611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB046463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 46.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.69700 REMARK 200 FOR SHELL : 3.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXL-97, RESOLVE, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 8000, 0.1 M PHOSPHATE-CITRATE REMARK 280 PH 4.2, 0.2 M NACL, 5 MM ENTEROBACTIN, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.65250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.56150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.62250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.56150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.65250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.62250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 HIS A 60 REMARK 465 GLN A 61 REMARK 465 SER A 106 REMARK 465 GLY A 314 REMARK 465 GLY A 315 REMARK 465 HIS A 397 REMARK 465 ASP A 398 REMARK 465 ARG A 399 REMARK 465 SER A 400 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 HIS B 60 REMARK 465 GLN B 61 REMARK 465 ASN B 62 REMARK 465 PRO B 105 REMARK 465 SER B 106 REMARK 465 PRO B 107 REMARK 465 GLY B 314 REMARK 465 GLY B 315 REMARK 465 HIS B 397 REMARK 465 ASP B 398 REMARK 465 ARG B 399 REMARK 465 SER B 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 233 O HOH A 562 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 233 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 -169.40 -160.79 REMARK 500 VAL A 56 -56.28 -127.24 REMARK 500 ILE A 235 -64.62 76.79 REMARK 500 SER A 281 -111.02 41.87 REMARK 500 HIS B 16 36.26 -140.64 REMARK 500 ASN B 24 -167.65 -163.40 REMARK 500 VAL B 56 -56.15 -120.02 REMARK 500 THR B 81 -166.35 -129.72 REMARK 500 ILE B 235 -71.90 78.70 REMARK 500 SER B 281 -118.97 54.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 587 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH B 610 DISTANCE = 5.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 O REMARK 620 2 HOH A 550 O 85.8 REMARK 620 3 HOH A 551 O 88.1 92.4 REMARK 620 4 HOH A 645 O 89.1 87.7 177.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC27316 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2B20 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENTEROCHELIN ESTERASE IROD FROM REMARK 900 SHIGELLA FLEXNERI REMARK 900 RELATED ID: 2QM0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BES PROTEIN FROM BACILLUS CEREUS REMARK 900 RELATED ID: 2GZR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENTEROBACTIN AND SALMOCHELIN HYDROLASE REMARK 900 IROE REMARK 900 RELATED ID: 2GZS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENTEROBACTIN HYDROLASE IROE COMPLEX REMARK 900 WITH DFP REMARK 900 RELATED ID: 3C8D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENTEROBACTIN ESTERASE FES FROM REMARK 900 SHIGELLA FLEXNERI IN THE PRESENCE OF 2,3-DI-HYDROXY-N- REMARK 900 BENZOYL-GLYCINE REMARK 900 RELATED ID: 3C8H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENTEROBACTIN ESTERASE FES FROM REMARK 900 SHIGELLA FLEXNERI IN THE PRESENCE OF 2,3-DI-HYDROXY-N- REMARK 900 BENZOYL-SERINE DBREF 3C87 A 1 400 UNP Q83SB9 Q83SB9_SHIFL 1 400 DBREF 3C87 B 1 400 UNP Q83SB9 Q83SB9_SHIFL 1 400 SEQADV 3C87 SER A -2 UNP Q83SB9 EXPRESSION TAG SEQADV 3C87 ASN A -1 UNP Q83SB9 EXPRESSION TAG SEQADV 3C87 ALA A 0 UNP Q83SB9 EXPRESSION TAG SEQADV 3C87 SER B -2 UNP Q83SB9 EXPRESSION TAG SEQADV 3C87 ASN B -1 UNP Q83SB9 EXPRESSION TAG SEQADV 3C87 ALA B 0 UNP Q83SB9 EXPRESSION TAG SEQRES 1 A 403 SER ASN ALA MSE THR ALA LEU LYS VAL GLY SER GLU SER SEQRES 2 A 403 TRP TRP GLN SER LYS HIS GLY PRO GLU TRP GLN ARG LEU SEQRES 3 A 403 ASN ASP GLU MSE PHE GLU VAL THR PHE TRP TRP ARG ASP SEQRES 4 A 403 PRO GLN GLY SER GLU GLU TYR SER THR ILE LYS ARG VAL SEQRES 5 A 403 TRP VAL TYR ILE THR GLY VAL THR ASP HIS HIS GLN ASN SEQRES 6 A 403 SER GLN PRO GLN SER MSE GLN ARG ILE ALA GLY THR ASP SEQRES 7 A 403 VAL TRP GLN TRP THR THR GLN LEU ASN ALA ASN TRP ARG SEQRES 8 A 403 GLY SER TYR CYS PHE ILE PRO THR GLU ARG ASP ASP ILE SEQRES 9 A 403 PHE SER ALA PRO SER PRO ASP ARG LEU GLU LEU ARG GLU SEQRES 10 A 403 GLY TRP ARG LYS LEU LEU PRO GLN ALA ILE ALA ASP PRO SEQRES 11 A 403 LEU ASN PRO GLN SER TRP LYS GLY GLY LEU GLY HIS ALA SEQRES 12 A 403 VAL SER ALA LEU GLU MSE PRO GLN ALA PRO LEU GLN PRO SEQRES 13 A 403 GLY TRP ASP CYS PRO GLN ALA PRO GLU ILE PRO ALA LYS SEQRES 14 A 403 GLU ILE ILE TRP LYS SER GLU ARG LEU LYS ASN SER ARG SEQRES 15 A 403 ARG VAL TRP ILE PHE THR THR GLY ASP VAL THR ALA GLU SEQRES 16 A 403 GLU ARG PRO LEU ALA VAL LEU LEU ASP GLY GLU PHE TRP SEQRES 17 A 403 ALA GLN SER MSE PRO VAL TRP PRO VAL LEU THR SER LEU SEQRES 18 A 403 THR HIS ARG GLN GLN LEU PRO PRO ALA VAL TYR VAL LEU SEQRES 19 A 403 ILE ASP ALA ILE ASP THR THR HIS ARG ALA HIS GLU LEU SEQRES 20 A 403 PRO CYS ASN ALA ASP PHE TRP LEU ALA VAL GLN GLN GLU SEQRES 21 A 403 LEU LEU PRO LEU VAL LYS VAL ILE ALA PRO PHE SER ASP SEQRES 22 A 403 ARG ALA ASP ARG THR VAL VAL ALA GLY GLN SER PHE GLY SEQRES 23 A 403 GLY LEU SER ALA LEU TYR ALA GLY LEU HIS TRP PRO GLU SEQRES 24 A 403 ARG PHE GLY CYS VAL LEU SER GLN SER GLY SER TYR TRP SEQRES 25 A 403 TRP PRO HIS ARG GLY GLY GLN GLN GLU GLY VAL LEU LEU SEQRES 26 A 403 GLU LYS LEU LYS ALA GLY GLU VAL SER ALA GLU GLY LEU SEQRES 27 A 403 ARG ILE VAL LEU GLU ALA GLY ILE ARG GLU PRO MSE ILE SEQRES 28 A 403 MSE ARG ALA ASN GLN ALA LEU TYR ALA GLN LEU HIS PRO SEQRES 29 A 403 ILE LYS GLU SER ILE PHE TRP ARG GLN VAL ASP GLY GLY SEQRES 30 A 403 HIS ASP ALA LEU CYS TRP ARG GLY GLY LEU MSE GLN GLY SEQRES 31 A 403 LEU ILE ASP LEU TRP GLN PRO LEU PHE HIS ASP ARG SER SEQRES 1 B 403 SER ASN ALA MSE THR ALA LEU LYS VAL GLY SER GLU SER SEQRES 2 B 403 TRP TRP GLN SER LYS HIS GLY PRO GLU TRP GLN ARG LEU SEQRES 3 B 403 ASN ASP GLU MSE PHE GLU VAL THR PHE TRP TRP ARG ASP SEQRES 4 B 403 PRO GLN GLY SER GLU GLU TYR SER THR ILE LYS ARG VAL SEQRES 5 B 403 TRP VAL TYR ILE THR GLY VAL THR ASP HIS HIS GLN ASN SEQRES 6 B 403 SER GLN PRO GLN SER MSE GLN ARG ILE ALA GLY THR ASP SEQRES 7 B 403 VAL TRP GLN TRP THR THR GLN LEU ASN ALA ASN TRP ARG SEQRES 8 B 403 GLY SER TYR CYS PHE ILE PRO THR GLU ARG ASP ASP ILE SEQRES 9 B 403 PHE SER ALA PRO SER PRO ASP ARG LEU GLU LEU ARG GLU SEQRES 10 B 403 GLY TRP ARG LYS LEU LEU PRO GLN ALA ILE ALA ASP PRO SEQRES 11 B 403 LEU ASN PRO GLN SER TRP LYS GLY GLY LEU GLY HIS ALA SEQRES 12 B 403 VAL SER ALA LEU GLU MSE PRO GLN ALA PRO LEU GLN PRO SEQRES 13 B 403 GLY TRP ASP CYS PRO GLN ALA PRO GLU ILE PRO ALA LYS SEQRES 14 B 403 GLU ILE ILE TRP LYS SER GLU ARG LEU LYS ASN SER ARG SEQRES 15 B 403 ARG VAL TRP ILE PHE THR THR GLY ASP VAL THR ALA GLU SEQRES 16 B 403 GLU ARG PRO LEU ALA VAL LEU LEU ASP GLY GLU PHE TRP SEQRES 17 B 403 ALA GLN SER MSE PRO VAL TRP PRO VAL LEU THR SER LEU SEQRES 18 B 403 THR HIS ARG GLN GLN LEU PRO PRO ALA VAL TYR VAL LEU SEQRES 19 B 403 ILE ASP ALA ILE ASP THR THR HIS ARG ALA HIS GLU LEU SEQRES 20 B 403 PRO CYS ASN ALA ASP PHE TRP LEU ALA VAL GLN GLN GLU SEQRES 21 B 403 LEU LEU PRO LEU VAL LYS VAL ILE ALA PRO PHE SER ASP SEQRES 22 B 403 ARG ALA ASP ARG THR VAL VAL ALA GLY GLN SER PHE GLY SEQRES 23 B 403 GLY LEU SER ALA LEU TYR ALA GLY LEU HIS TRP PRO GLU SEQRES 24 B 403 ARG PHE GLY CYS VAL LEU SER GLN SER GLY SER TYR TRP SEQRES 25 B 403 TRP PRO HIS ARG GLY GLY GLN GLN GLU GLY VAL LEU LEU SEQRES 26 B 403 GLU LYS LEU LYS ALA GLY GLU VAL SER ALA GLU GLY LEU SEQRES 27 B 403 ARG ILE VAL LEU GLU ALA GLY ILE ARG GLU PRO MSE ILE SEQRES 28 B 403 MSE ARG ALA ASN GLN ALA LEU TYR ALA GLN LEU HIS PRO SEQRES 29 B 403 ILE LYS GLU SER ILE PHE TRP ARG GLN VAL ASP GLY GLY SEQRES 30 B 403 HIS ASP ALA LEU CYS TRP ARG GLY GLY LEU MSE GLN GLY SEQRES 31 B 403 LEU ILE ASP LEU TRP GLN PRO LEU PHE HIS ASP ARG SER MODRES 3C87 MSE A 27 MET SELENOMETHIONINE MODRES 3C87 MSE A 68 MET SELENOMETHIONINE MODRES 3C87 MSE A 146 MET SELENOMETHIONINE MODRES 3C87 MSE A 209 MET SELENOMETHIONINE MODRES 3C87 MSE A 347 MET SELENOMETHIONINE MODRES 3C87 MSE A 349 MET SELENOMETHIONINE MODRES 3C87 MSE A 385 MET SELENOMETHIONINE MODRES 3C87 MSE B 27 MET SELENOMETHIONINE MODRES 3C87 MSE B 68 MET SELENOMETHIONINE MODRES 3C87 MSE B 146 MET SELENOMETHIONINE MODRES 3C87 MSE B 209 MET SELENOMETHIONINE MODRES 3C87 MSE B 347 MET SELENOMETHIONINE MODRES 3C87 MSE B 349 MET SELENOMETHIONINE MODRES 3C87 MSE B 385 MET SELENOMETHIONINE HET MSE A 27 8 HET MSE A 68 8 HET MSE A 146 8 HET MSE A 209 8 HET MSE A 347 8 HET MSE A 349 8 HET MSE A 385 8 HET MSE B 27 8 HET MSE B 68 8 HET MSE B 146 8 HET MSE B 209 8 HET MSE B 347 8 HET MSE B 349 8 HET MSE B 385 8 HET NA A 501 1 HET PO4 B 502 5 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 NA NA 1+ FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *302(H2 O) HELIX 1 1 SER A 8 SER A 14 1 7 HELIX 2 2 SER A 40 SER A 44 5 5 HELIX 3 3 ASP A 108 LEU A 120 1 13 HELIX 4 4 PRO A 121 ALA A 123 5 3 HELIX 5 5 ASP A 201 SER A 208 1 8 HELIX 6 6 VAL A 211 ARG A 221 1 11 HELIX 7 7 ASP A 236 LEU A 244 1 9 HELIX 8 8 ASN A 247 GLU A 257 1 11 HELIX 9 9 GLU A 257 ALA A 266 1 10 HELIX 10 10 ARG A 271 ARG A 274 5 4 HELIX 11 11 SER A 281 TRP A 294 1 14 HELIX 12 12 GLY A 319 ALA A 327 1 9 HELIX 13 13 GLU A 345 LEU A 359 1 15 HELIX 14 14 HIS A 360 GLU A 364 5 5 HELIX 15 15 ASP A 376 GLN A 393 1 18 HELIX 16 16 PRO A 394 PHE A 396 5 3 HELIX 17 17 SER B 10 LYS B 15 5 6 HELIX 18 18 ASP B 108 LEU B 120 1 13 HELIX 19 19 PRO B 121 ALA B 123 5 3 HELIX 20 20 ASP B 201 SER B 208 1 8 HELIX 21 21 VAL B 211 ARG B 221 1 11 HELIX 22 22 ASP B 236 LEU B 244 1 9 HELIX 23 23 ASN B 247 GLU B 257 1 11 HELIX 24 24 GLU B 257 ALA B 266 1 10 HELIX 25 25 ARG B 271 ARG B 274 5 4 HELIX 26 26 SER B 281 TRP B 294 1 14 HELIX 27 27 GLY B 319 GLY B 328 1 10 HELIX 28 28 GLU B 345 GLN B 358 1 14 HELIX 29 29 ASP B 376 TRP B 392 1 17 HELIX 30 30 GLN B 393 PHE B 396 5 4 SHEET 1 A 4 GLU A 19 ARG A 22 0 SHEET 2 A 4 MSE A 27 ARG A 35 -1 O GLU A 29 N GLN A 21 SHEET 3 A 4 VAL A 76 ASN A 84 -1 O TRP A 79 N PHE A 32 SHEET 4 A 4 GLN A 69 ARG A 70 -1 N GLN A 69 O GLN A 78 SHEET 1 B 4 ARG A 48 ILE A 53 0 SHEET 2 B 4 ARG A 88 THR A 96 -1 O THR A 96 N ARG A 48 SHEET 3 B 4 ALA A 140 GLU A 145 -1 O LEU A 144 N GLY A 89 SHEET 4 B 4 SER A 132 LYS A 134 -1 N TRP A 133 O VAL A 141 SHEET 1 C 8 LYS A 166 SER A 172 0 SHEET 2 C 8 ASN A 177 THR A 185 -1 O ILE A 183 N LYS A 166 SHEET 3 C 8 VAL A 228 ILE A 232 -1 O TYR A 229 N PHE A 184 SHEET 4 C 8 LEU A 196 LEU A 199 1 N LEU A 199 O VAL A 230 SHEET 5 C 8 VAL A 276 GLN A 280 1 O VAL A 276 N VAL A 198 SHEET 6 C 8 CYS A 300 GLN A 304 1 O LEU A 302 N VAL A 277 SHEET 7 C 8 ARG A 336 GLY A 342 1 O VAL A 338 N VAL A 301 SHEET 8 C 8 ILE A 366 VAL A 371 1 O PHE A 367 N LEU A 339 SHEET 1 D 4 GLU B 19 ARG B 22 0 SHEET 2 D 4 MSE B 27 ARG B 35 -1 O THR B 31 N GLU B 19 SHEET 3 D 4 VAL B 76 ASN B 84 -1 O LEU B 83 N PHE B 28 SHEET 4 D 4 GLN B 69 ARG B 70 -1 N GLN B 69 O GLN B 78 SHEET 1 E 4 ARG B 48 ILE B 53 0 SHEET 2 E 4 ARG B 88 THR B 96 -1 O THR B 96 N ARG B 48 SHEET 3 E 4 ALA B 140 GLU B 145 -1 O SER B 142 N TYR B 91 SHEET 4 E 4 SER B 132 LYS B 134 -1 N TRP B 133 O VAL B 141 SHEET 1 F 8 LYS B 166 SER B 172 0 SHEET 2 F 8 ASN B 177 THR B 185 -1 O ARG B 179 N TRP B 170 SHEET 3 F 8 VAL B 228 ILE B 232 -1 O TYR B 229 N PHE B 184 SHEET 4 F 8 LEU B 196 LEU B 199 1 N LEU B 199 O VAL B 230 SHEET 5 F 8 VAL B 276 GLN B 280 1 O VAL B 276 N VAL B 198 SHEET 6 F 8 CYS B 300 GLN B 304 1 O LEU B 302 N VAL B 277 SHEET 7 F 8 ARG B 336 GLY B 342 1 O VAL B 338 N VAL B 301 SHEET 8 F 8 SER B 365 VAL B 371 1 O SER B 365 N ILE B 337 LINK O ASP A 156 NA NA A 501 1555 1555 2.41 LINK NA NA A 501 O HOH A 550 1555 1555 2.58 LINK NA NA A 501 O HOH A 551 1555 1555 2.45 LINK NA NA A 501 O HOH A 645 1555 1555 2.58 LINK C GLU A 26 N MSE A 27 1555 1555 1.34 LINK C MSE A 27 N PHE A 28 1555 1555 1.33 LINK C SER A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N GLN A 69 1555 1555 1.34 LINK C GLU A 145 N MSE A 146 1555 1555 1.32 LINK C MSE A 146 N PRO A 147 1555 1555 1.36 LINK C SER A 208 N MSE A 209 1555 1555 1.32 LINK C MSE A 209 N PRO A 210 1555 1555 1.34 LINK C PRO A 346 N MSE A 347 1555 1555 1.33 LINK C MSE A 347 N ILE A 348 1555 1555 1.34 LINK C ILE A 348 N MSE A 349 1555 1555 1.34 LINK C MSE A 349 N ARG A 350 1555 1555 1.34 LINK C LEU A 384 N MSE A 385 1555 1555 1.33 LINK C MSE A 385 N GLN A 386 1555 1555 1.33 LINK C GLU B 26 N MSE B 27 1555 1555 1.34 LINK C MSE B 27 N PHE B 28 1555 1555 1.33 LINK C SER B 67 N MSE B 68 1555 1555 1.32 LINK C MSE B 68 N AGLN B 69 1555 1555 1.31 LINK C MSE B 68 N BGLN B 69 1555 1555 1.32 LINK C GLU B 145 N MSE B 146 1555 1555 1.32 LINK C MSE B 146 N PRO B 147 1555 1555 1.35 LINK C SER B 208 N MSE B 209 1555 1555 1.32 LINK C MSE B 209 N PRO B 210 1555 1555 1.33 LINK C PRO B 346 N MSE B 347 1555 1555 1.34 LINK C MSE B 347 N ILE B 348 1555 1555 1.32 LINK C ILE B 348 N MSE B 349 1555 1555 1.33 LINK C MSE B 349 N ARG B 350 1555 1555 1.33 LINK C LEU B 384 N MSE B 385 1555 1555 1.34 LINK C MSE B 385 N GLN B 386 1555 1555 1.33 CISPEP 1 TRP A 310 PRO A 311 0 2.34 CISPEP 2 TRP B 310 PRO B 311 0 -3.05 SITE 1 AC1 2 ASP A 156 ASP B 156 SITE 1 AC2 6 SER B 331 ALA B 332 GLU B 333 HIS B 360 SITE 2 AC2 6 LYS B 363 GLU B 364 CRYST1 47.305 113.245 151.123 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006617 0.00000