HEADER CHAPERONE 15-FEB-08 3C9D TITLE CRYSTAL STRUCTURE OF VPS75 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 75; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 GENE: VPS75; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS CHROMATIN, HISTONE CHAPERONE, NUCLEUS, PHOSPHOPROTEIN, PROTEIN KEYWDS 2 TRANSPORT, TRANSPORT, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR C.E.BERNDSEN,T.TSUBOTA,S.E.LINDNER,S.LEE,J.M.HOLTON,P.D.KAUFMAN, AUTHOR 2 J.L.KECK,J.M.DENU REVDAT 6 21-FEB-24 3C9D 1 REMARK REVDAT 5 25-OCT-17 3C9D 1 REMARK REVDAT 4 13-JUL-11 3C9D 1 VERSN REVDAT 3 08-SEP-09 3C9D 1 JRNL REVDAT 2 10-FEB-09 3C9D 1 VERSN JRNL REVDAT 1 12-AUG-08 3C9D 0 JRNL AUTH C.E.BERNDSEN,T.TSUBOTA,S.E.LINDNER,S.LEE,J.M.HOLTON, JRNL AUTH 2 P.D.KAUFMAN,J.L.KECK,J.M.DENU JRNL TITL MOLECULAR FUNCTIONS OF THE HISTONE ACETYLTRANSFERASE JRNL TITL 2 CHAPERONE COMPLEX RTT109-VPS75 JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 948 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 19172748 JRNL DOI 10.1038/NSMB.1459 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 37548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.42000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : -2.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3546 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4775 ; 0.844 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 5.196 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;31.882 ;24.144 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 647 ;15.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.425 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 485 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2702 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1659 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2410 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 304 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 108 ; 0.369 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.381 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2122 ; 0.665 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3330 ; 1.076 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1655 ; 1.711 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1445 ; 2.862 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8901 0.6554 -8.4571 REMARK 3 T TENSOR REMARK 3 T11: 0.0064 T22: -0.0331 REMARK 3 T33: -0.0463 T12: 0.0229 REMARK 3 T13: 0.0064 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.5597 L22: 0.6912 REMARK 3 L33: 0.7737 L12: -0.1419 REMARK 3 L13: 0.0107 L23: 0.2227 REMARK 3 S TENSOR REMARK 3 S11: 0.0759 S12: 0.0756 S13: 0.0742 REMARK 3 S21: -0.0323 S22: 0.0643 S23: -0.1357 REMARK 3 S31: -0.0178 S32: 0.1130 S33: -0.1402 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 221 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1002 -15.2934 18.7161 REMARK 3 T TENSOR REMARK 3 T11: -0.0762 T22: -0.0741 REMARK 3 T33: -0.0390 T12: -0.0098 REMARK 3 T13: -0.0120 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.7117 L22: 0.9504 REMARK 3 L33: 0.5883 L12: -0.5302 REMARK 3 L13: -0.2987 L23: 0.1131 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.0173 S13: -0.1048 REMARK 3 S21: -0.0676 S22: 0.0179 S23: 0.0758 REMARK 3 S31: 0.0300 S32: -0.0350 S33: -0.0311 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9392 -8.8251 7.9136 REMARK 3 T TENSOR REMARK 3 T11: -0.0212 T22: -0.0262 REMARK 3 T33: 0.0308 T12: -0.0027 REMARK 3 T13: -0.0084 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.2887 L22: 0.1716 REMARK 3 L33: 0.2074 L12: -0.1425 REMARK 3 L13: -0.1114 L23: -0.0741 REMARK 3 S TENSOR REMARK 3 S11: 0.0371 S12: 0.0045 S13: -0.0173 REMARK 3 S21: 0.0090 S22: 0.0080 S23: 0.0322 REMARK 3 S31: -0.0027 S32: 0.0222 S33: -0.0451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS, 100 MM KCL, 10 MM MGCL(2), REMARK 280 35% PEG400, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.40250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.82050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.04250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.82050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.40250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.04250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 130 REMARK 465 LYS A 131 REMARK 465 ASP A 132 REMARK 465 ASP A 133 REMARK 465 GLN A 134 REMARK 465 GLU A 135 REMARK 465 ASP A 222 REMARK 465 LEU A 223 REMARK 465 GLU A 224 REMARK 465 ASP A 225 REMARK 465 GLU A 226 REMARK 465 GLU A 227 REMARK 465 GLY A 228 REMARK 465 GLU A 229 REMARK 465 SER A 230 REMARK 465 GLY A 231 REMARK 465 LEU A 232 REMARK 465 SER A 233 REMARK 465 ALA A 234 REMARK 465 ASP A 235 REMARK 465 GLY A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLU A 239 REMARK 465 ASP A 240 REMARK 465 ASP A 241 REMARK 465 ASP A 242 REMARK 465 GLY A 243 REMARK 465 SER A 244 REMARK 465 LEU A 245 REMARK 465 GLY A 246 REMARK 465 GLU A 247 REMARK 465 VAL A 248 REMARK 465 ASP A 249 REMARK 465 LEU A 250 REMARK 465 PRO A 251 REMARK 465 LEU A 252 REMARK 465 SER A 253 REMARK 465 ASP A 254 REMARK 465 GLU A 255 REMARK 465 GLU A 256 REMARK 465 PRO A 257 REMARK 465 SER A 258 REMARK 465 SER A 259 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 GLU B 8 REMARK 465 ASN B 9 REMARK 465 GLU B 10 REMARK 465 GLY B 130 REMARK 465 LYS B 131 REMARK 465 ASP B 132 REMARK 465 ASP B 133 REMARK 465 GLN B 134 REMARK 465 GLU B 135 REMARK 465 ASP B 222 REMARK 465 LEU B 223 REMARK 465 GLU B 224 REMARK 465 ASP B 225 REMARK 465 GLU B 226 REMARK 465 GLU B 227 REMARK 465 GLY B 228 REMARK 465 GLU B 229 REMARK 465 SER B 230 REMARK 465 GLY B 231 REMARK 465 LEU B 232 REMARK 465 SER B 233 REMARK 465 ALA B 234 REMARK 465 ASP B 235 REMARK 465 GLY B 236 REMARK 465 ASP B 237 REMARK 465 SER B 238 REMARK 465 GLU B 239 REMARK 465 ASP B 240 REMARK 465 ASP B 241 REMARK 465 ASP B 242 REMARK 465 GLY B 243 REMARK 465 SER B 244 REMARK 465 LEU B 245 REMARK 465 GLY B 246 REMARK 465 GLU B 247 REMARK 465 VAL B 248 REMARK 465 ASP B 249 REMARK 465 LEU B 250 REMARK 465 PRO B 251 REMARK 465 LEU B 252 REMARK 465 SER B 253 REMARK 465 ASP B 254 REMARK 465 GLU B 255 REMARK 465 GLU B 256 REMARK 465 PRO B 257 REMARK 465 SER B 258 REMARK 465 SER B 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 56 NZ LYS B 59 1.54 REMARK 500 NH2 ARG B 173 O HOH B 491 2.02 REMARK 500 OE1 GLU A 113 O HOH A 394 2.05 REMARK 500 CD GLU B 56 NZ LYS B 59 2.11 REMARK 500 NH1 ARG B 73 O HOH B 356 2.13 REMARK 500 O HOH B 332 O HOH B 467 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 376 O HOH B 393 4555 1.59 REMARK 500 OE1 GLU B 96 OE2 GLU B 113 3444 1.76 REMARK 500 OE2 GLU B 96 O HOH B 489 3444 1.98 REMARK 500 O HOH B 492 O HOH B 495 3454 2.02 REMARK 500 OE2 GLU B 96 OE2 GLU B 113 3444 2.09 REMARK 500 CD GLU B 96 OE2 GLU B 113 3444 2.12 REMARK 500 CD GLU B 96 O HOH B 489 3444 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 -71.82 -45.33 REMARK 500 ASP A 115 -39.64 -143.21 REMARK 500 GLU A 207 -64.76 -125.39 REMARK 500 ALA B 55 -78.94 -26.40 REMARK 500 ARG B 164 45.33 -89.45 REMARK 500 PRO B 166 -49.52 -25.42 REMARK 500 GLU B 207 -63.61 -124.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C9B RELATED DB: PDB REMARK 900 SEMET VPS75 DBREF 3C9D A 1 221 UNP P53853 VPS75_YEAST 1 221 DBREF 3C9D B 1 221 UNP P53853 VPS75_YEAST 1 221 SEQRES 1 A 259 MET MET SER ASP GLN GLU ASN GLU ASN GLU HIS ALA LYS SEQRES 2 A 259 ALA PHE LEU GLY LEU ALA LYS CYS GLU GLU GLU VAL ASP SEQRES 3 A 259 ALA ILE GLU ARG GLU VAL GLU LEU TYR ARG LEU ASN LYS SEQRES 4 A 259 MET LYS PRO VAL TYR GLU LYS ARG ASP ALA TYR ILE ASP SEQRES 5 A 259 GLU ILE ALA GLU PHE TRP LYS ILE VAL LEU SER GLN HIS SEQRES 6 A 259 VAL SER PHE ALA ASN TYR ILE ARG ALA SER ASP PHE LYS SEQRES 7 A 259 TYR ILE ASP THR ILE ASP LYS ILE LYS VAL GLU TRP LEU SEQRES 8 A 259 ALA LEU GLU SER GLU MET TYR ASP THR ARG ASP PHE SER SEQRES 9 A 259 ILE THR PHE HIS PHE HIS GLY ILE GLU GLY ASP PHE LYS SEQRES 10 A 259 GLU GLN GLN VAL THR LYS VAL PHE GLN ILE LYS LYS GLY SEQRES 11 A 259 LYS ASP ASP GLN GLU ASP GLY ILE LEU THR SER GLU PRO SEQRES 12 A 259 VAL PRO ILE GLU TRP PRO GLN SER TYR ASP SER ILE ASN SEQRES 13 A 259 PRO ASP LEU ILE LYS ASP LYS ARG SER PRO GLU GLY LYS SEQRES 14 A 259 LYS LYS TYR ARG GLN GLY MET LYS THR ILE PHE GLY TRP SEQRES 15 A 259 PHE ARG TRP THR GLY LEU LYS PRO GLY LYS GLU PHE PRO SEQRES 16 A 259 HIS GLY ASP SER LEU ALA SER LEU PHE SER GLU GLU ILE SEQRES 17 A 259 TYR PRO PHE CYS VAL LYS TYR TYR ALA GLU ALA GLN ARG SEQRES 18 A 259 ASP LEU GLU ASP GLU GLU GLY GLU SER GLY LEU SER ALA SEQRES 19 A 259 ASP GLY ASP SER GLU ASP ASP ASP GLY SER LEU GLY GLU SEQRES 20 A 259 VAL ASP LEU PRO LEU SER ASP GLU GLU PRO SER SER SEQRES 1 B 259 MET MET SER ASP GLN GLU ASN GLU ASN GLU HIS ALA LYS SEQRES 2 B 259 ALA PHE LEU GLY LEU ALA LYS CYS GLU GLU GLU VAL ASP SEQRES 3 B 259 ALA ILE GLU ARG GLU VAL GLU LEU TYR ARG LEU ASN LYS SEQRES 4 B 259 MET LYS PRO VAL TYR GLU LYS ARG ASP ALA TYR ILE ASP SEQRES 5 B 259 GLU ILE ALA GLU PHE TRP LYS ILE VAL LEU SER GLN HIS SEQRES 6 B 259 VAL SER PHE ALA ASN TYR ILE ARG ALA SER ASP PHE LYS SEQRES 7 B 259 TYR ILE ASP THR ILE ASP LYS ILE LYS VAL GLU TRP LEU SEQRES 8 B 259 ALA LEU GLU SER GLU MET TYR ASP THR ARG ASP PHE SER SEQRES 9 B 259 ILE THR PHE HIS PHE HIS GLY ILE GLU GLY ASP PHE LYS SEQRES 10 B 259 GLU GLN GLN VAL THR LYS VAL PHE GLN ILE LYS LYS GLY SEQRES 11 B 259 LYS ASP ASP GLN GLU ASP GLY ILE LEU THR SER GLU PRO SEQRES 12 B 259 VAL PRO ILE GLU TRP PRO GLN SER TYR ASP SER ILE ASN SEQRES 13 B 259 PRO ASP LEU ILE LYS ASP LYS ARG SER PRO GLU GLY LYS SEQRES 14 B 259 LYS LYS TYR ARG GLN GLY MET LYS THR ILE PHE GLY TRP SEQRES 15 B 259 PHE ARG TRP THR GLY LEU LYS PRO GLY LYS GLU PHE PRO SEQRES 16 B 259 HIS GLY ASP SER LEU ALA SER LEU PHE SER GLU GLU ILE SEQRES 17 B 259 TYR PRO PHE CYS VAL LYS TYR TYR ALA GLU ALA GLN ARG SEQRES 18 B 259 ASP LEU GLU ASP GLU GLU GLY GLU SER GLY LEU SER ALA SEQRES 19 B 259 ASP GLY ASP SER GLU ASP ASP ASP GLY SER LEU GLY GLU SEQRES 20 B 259 VAL ASP LEU PRO LEU SER ASP GLU GLU PRO SER SER FORMUL 3 HOH *309(H2 O) HELIX 1 1 GLU A 8 ASP A 52 1 45 HELIX 2 2 GLU A 56 HIS A 65 1 10 HELIX 3 3 SER A 67 ILE A 72 1 6 HELIX 4 4 ARG A 73 SER A 75 5 3 HELIX 5 5 ASP A 76 ASP A 81 1 6 HELIX 6 6 ALA A 92 GLU A 94 5 3 HELIX 7 7 PRO A 149 ASP A 153 5 5 HELIX 8 8 SER A 165 LYS A 177 1 13 HELIX 9 9 THR A 178 PHE A 183 1 6 HELIX 10 10 HIS A 196 GLU A 207 1 12 HELIX 11 11 GLU A 207 ARG A 221 1 15 HELIX 12 12 HIS B 11 ASP B 52 1 42 HELIX 13 13 GLU B 56 HIS B 65 1 10 HELIX 14 14 SER B 67 ILE B 72 5 6 HELIX 15 15 ARG B 73 SER B 75 5 3 HELIX 16 16 ASP B 76 ASP B 81 1 6 HELIX 17 17 ALA B 92 GLU B 94 5 3 HELIX 18 18 PRO B 149 ASN B 156 5 8 HELIX 19 19 SER B 165 LYS B 177 1 13 HELIX 20 20 THR B 178 PHE B 183 1 6 HELIX 21 21 HIS B 196 GLU B 207 1 12 HELIX 22 22 GLU B 207 ARG B 221 1 15 SHEET 1 A 4 ILE A 83 TRP A 90 0 SHEET 2 A 4 PHE A 103 PHE A 109 -1 O SER A 104 N GLU A 89 SHEET 3 A 4 GLN A 119 LYS A 128 -1 O PHE A 125 N PHE A 103 SHEET 4 A 4 ILE A 138 SER A 141 -1 O ILE A 138 N LYS A 128 SHEET 1 B 4 ILE B 83 TRP B 90 0 SHEET 2 B 4 PHE B 103 PHE B 109 -1 O THR B 106 N LYS B 87 SHEET 3 B 4 GLN B 119 LYS B 128 -1 O PHE B 125 N PHE B 103 SHEET 4 B 4 ILE B 138 SER B 141 -1 O ILE B 138 N LYS B 128 CRYST1 74.805 86.085 85.641 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013368 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011677 0.00000