HEADER TRANSPORT PROTEIN 15-FEB-08 3C9H TITLE CRYSTAL STRUCTURE OF THE SUBSTRATE BINDING PROTEIN OF THE ABC TITLE 2 TRANSPORTER FROM AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: GI:17936349, AGR_C_4480, ATU2467; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS SUBSTRATE BINDING PROTEIN, ABC TRANSPORTER, STRUCTURAL GENOMICS, KEYWDS 2 MCSG, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 21-FEB-24 3C9H 1 REMARK LINK REVDAT 3 13-JUL-11 3C9H 1 VERSN REVDAT 2 24-FEB-09 3C9H 1 VERSN REVDAT 1 04-MAR-08 3C9H 0 JRNL AUTH R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE SUBSTRATE BINDING PROTEIN OF JRNL TITL 2 THE ABC TRANSPORTER FROM AGROBACTERIUM TUMEFACIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 54136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2898 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3879 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5265 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 433 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.497 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.333 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5415 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3672 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7356 ; 1.371 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8897 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 669 ; 5.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;34.946 ;23.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 871 ;13.921 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;15.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 802 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6058 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1136 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1185 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3819 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2594 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2743 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 376 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.016 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.277 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4314 ; 1.486 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1351 ; 0.544 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5399 ; 1.726 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2439 ; 3.033 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1957 ; 4.110 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 14 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 60 REMARK 3 RESIDUE RANGE : A 61 A 100 REMARK 3 RESIDUE RANGE : A 101 A 150 REMARK 3 RESIDUE RANGE : A 151 A 200 REMARK 3 RESIDUE RANGE : A 201 A 250 REMARK 3 RESIDUE RANGE : A 251 A 300 REMARK 3 RESIDUE RANGE : A 301 A 354 REMARK 3 RESIDUE RANGE : B 15 B 60 REMARK 3 RESIDUE RANGE : B 61 B 100 REMARK 3 RESIDUE RANGE : B 101 B 150 REMARK 3 RESIDUE RANGE : B 151 B 200 REMARK 3 RESIDUE RANGE : B 201 B 250 REMARK 3 RESIDUE RANGE : B 251 B 300 REMARK 3 RESIDUE RANGE : B 301 B 353 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7530 -0.0840 11.1450 REMARK 3 T TENSOR REMARK 3 T11: -0.0293 T22: -0.0228 REMARK 3 T33: -0.0462 T12: 0.0063 REMARK 3 T13: -0.0003 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.6245 L22: 0.1016 REMARK 3 L33: 0.2935 L12: 0.1767 REMARK 3 L13: -0.0115 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0196 S13: 0.0044 REMARK 3 S21: -0.0151 S22: 0.0184 S23: -0.0024 REMARK 3 S31: -0.0121 S32: -0.0162 S33: -0.0314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54136 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 68.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.73100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 0.2M AMMONIUM REMARK 280 ACETATE, 30% PEG 4000, 10MM ATP, PH 5.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.65650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.82100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.47350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.82100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.65650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.47350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ILE A 3 REMARK 465 CYS A 4 REMARK 465 LEU A 5 REMARK 465 PHE A 6 REMARK 465 LEU A 7 REMARK 465 CYS A 8 REMARK 465 LEU A 9 REMARK 465 CYS A 10 REMARK 465 LEU A 11 REMARK 465 CYS A 12 REMARK 465 MET A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 LYS A 30 REMARK 465 THR A 31 REMARK 465 ASP A 32 REMARK 465 ALA A 33 REMARK 465 SER A 181 REMARK 465 GLN A 355 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ILE B 3 REMARK 465 CYS B 4 REMARK 465 LEU B 5 REMARK 465 PHE B 6 REMARK 465 LEU B 7 REMARK 465 CYS B 8 REMARK 465 LEU B 9 REMARK 465 CYS B 10 REMARK 465 LEU B 11 REMARK 465 CYS B 12 REMARK 465 MET B 13 REMARK 465 ALA B 14 REMARK 465 SER B 354 REMARK 465 GLN B 355 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 414 O HOH A 612 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 278 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 278 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 146 58.97 -119.01 REMARK 500 ASP A 197 42.13 -90.86 REMARK 500 ALA B 114 -37.62 -32.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 41 O REMARK 620 2 ASP A 43 OD1 101.9 REMARK 620 3 CIT A 402 O2 79.1 99.4 REMARK 620 4 CIT A 402 O7 101.0 156.0 78.0 REMARK 620 5 HOH A 414 O 96.5 89.3 170.9 95.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 41 O REMARK 620 2 ASP B 43 OD1 99.2 REMARK 620 3 CIT B 402 O1 76.8 100.7 REMARK 620 4 CIT B 402 O7 102.7 156.2 75.7 REMARK 620 5 HOH B 425 O 99.8 91.2 167.9 94.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6296 RELATED DB: TARGETDB DBREF 3C9H A 1 355 UNP Q7CWZ6 Q7CWZ6_AGRT5 5 359 DBREF 3C9H B 1 355 UNP Q7CWZ6 Q7CWZ6_AGRT5 5 359 SEQRES 1 A 355 MET ARG ILE CYS LEU PHE LEU CYS LEU CYS LEU CYS MET SEQRES 2 A 355 ALA SER PRO ALA LEU ALA GLN VAL ALA VAL PHE PRO ALA SEQRES 3 A 355 LEU SER GLY LYS THR ASP ALA GLN THR LEU VAL VAL TYR SEQRES 4 A 355 SER SER LEU ASP GLU PRO LEU ALA THR PRO MET ILE GLU SEQRES 5 A 355 GLY PHE GLN LYS ALA ASN PRO ASP ILE ALA VAL HIS TYR SEQRES 6 A 355 GLU ASP MET LEU THR GLY GLU ILE TYR ASP ARG ILE VAL SEQRES 7 A 355 LYS GLU THR ASP ALA GLY LYS LYS THR ALA ASP PHE ALA SEQRES 8 A 355 PHE SER SER ALA MET ASP LEU GLN VAL LYS LEU SER ASN SEQRES 9 A 355 ASP GLY TYR ALA GLN ARG SER ASP LEU ALA MET SER ALA SEQRES 10 A 355 ARG TRP PRO ALA TRP ALA ASN TRP ARG ASN THR ALA TYR SEQRES 11 A 355 ALA LEU THR PHE GLU PRO ALA VAL PHE VAL TYR HIS LYS SEQRES 12 A 355 PRO SER PHE THR THR GLU LYS PRO PRO ALA THR ARG ALA SEQRES 13 A 355 GLU PHE VAL ASP TYR LEU GLU ARG HIS ALA LYS GLU VAL SEQRES 14 A 355 HIS GLY ARG ILE ALA THR TYR ASP ILE GLU ARG SER GLY SEQRES 15 A 355 VAL GLY PHE LEU PHE MET SER ARG ASP GLN GLU GLN PHE SEQRES 16 A 355 GLY ASP ILE TRP SER VAL ILE LYS ALA MET GLY ALA ALA SEQRES 17 A 355 GLY VAL LYS VAL TYR SER THR SER SER ALA ILE LEU GLU SEQRES 18 A 355 ARG VAL SER ASP GLY ARG PHE VAL LEU GLY TYR ASN ILE SEQRES 19 A 355 LEU GLY SER TYR ALA ALA ASP TRP ALA SER ARG HIS PRO SEQRES 20 A 355 ASP VAL GLY ILE VAL LEU PRO LYS ASP TYR THR VAL VAL SEQRES 21 A 355 MET SER ARG ILE GLY LEU VAL PRO GLU ALA ALA ALA ASN SEQRES 22 A 355 PRO GLU LEU GLY ARG ARG TYR LEU GLU PHE PHE MET SER SEQRES 23 A 355 LYS GLU GLY GLN THR ILE MET ALA ARG GLN LEU GLN ILE SEQRES 24 A 355 PRO ALA VAL SER PRO GLU VAL ALA GLY GLU ASN THR ALA SEQRES 25 A 355 ASN THR MET GLN ALA ILE HIS GLY ALA GLN LEU ARG PRO SEQRES 26 A 355 VAL PRO VAL SER PRO GLY LEU MET VAL TYR LEU ASP GLN SEQRES 27 A 355 VAL LYS ARG SER ARG LEU ILE GLU ARG TRP ASN GLU ALA SEQRES 28 A 355 LEU ARG SER GLN SEQRES 1 B 355 MET ARG ILE CYS LEU PHE LEU CYS LEU CYS LEU CYS MET SEQRES 2 B 355 ALA SER PRO ALA LEU ALA GLN VAL ALA VAL PHE PRO ALA SEQRES 3 B 355 LEU SER GLY LYS THR ASP ALA GLN THR LEU VAL VAL TYR SEQRES 4 B 355 SER SER LEU ASP GLU PRO LEU ALA THR PRO MET ILE GLU SEQRES 5 B 355 GLY PHE GLN LYS ALA ASN PRO ASP ILE ALA VAL HIS TYR SEQRES 6 B 355 GLU ASP MET LEU THR GLY GLU ILE TYR ASP ARG ILE VAL SEQRES 7 B 355 LYS GLU THR ASP ALA GLY LYS LYS THR ALA ASP PHE ALA SEQRES 8 B 355 PHE SER SER ALA MET ASP LEU GLN VAL LYS LEU SER ASN SEQRES 9 B 355 ASP GLY TYR ALA GLN ARG SER ASP LEU ALA MET SER ALA SEQRES 10 B 355 ARG TRP PRO ALA TRP ALA ASN TRP ARG ASN THR ALA TYR SEQRES 11 B 355 ALA LEU THR PHE GLU PRO ALA VAL PHE VAL TYR HIS LYS SEQRES 12 B 355 PRO SER PHE THR THR GLU LYS PRO PRO ALA THR ARG ALA SEQRES 13 B 355 GLU PHE VAL ASP TYR LEU GLU ARG HIS ALA LYS GLU VAL SEQRES 14 B 355 HIS GLY ARG ILE ALA THR TYR ASP ILE GLU ARG SER GLY SEQRES 15 B 355 VAL GLY PHE LEU PHE MET SER ARG ASP GLN GLU GLN PHE SEQRES 16 B 355 GLY ASP ILE TRP SER VAL ILE LYS ALA MET GLY ALA ALA SEQRES 17 B 355 GLY VAL LYS VAL TYR SER THR SER SER ALA ILE LEU GLU SEQRES 18 B 355 ARG VAL SER ASP GLY ARG PHE VAL LEU GLY TYR ASN ILE SEQRES 19 B 355 LEU GLY SER TYR ALA ALA ASP TRP ALA SER ARG HIS PRO SEQRES 20 B 355 ASP VAL GLY ILE VAL LEU PRO LYS ASP TYR THR VAL VAL SEQRES 21 B 355 MET SER ARG ILE GLY LEU VAL PRO GLU ALA ALA ALA ASN SEQRES 22 B 355 PRO GLU LEU GLY ARG ARG TYR LEU GLU PHE PHE MET SER SEQRES 23 B 355 LYS GLU GLY GLN THR ILE MET ALA ARG GLN LEU GLN ILE SEQRES 24 B 355 PRO ALA VAL SER PRO GLU VAL ALA GLY GLU ASN THR ALA SEQRES 25 B 355 ASN THR MET GLN ALA ILE HIS GLY ALA GLN LEU ARG PRO SEQRES 26 B 355 VAL PRO VAL SER PRO GLY LEU MET VAL TYR LEU ASP GLN SEQRES 27 B 355 VAL LYS ARG SER ARG LEU ILE GLU ARG TRP ASN GLU ALA SEQRES 28 B 355 LEU ARG SER GLN HET MG A 401 1 HET CIT A 402 13 HET MG B 401 1 HET CIT B 402 13 HETNAM MG MAGNESIUM ION HETNAM CIT CITRIC ACID FORMUL 3 MG 2(MG 2+) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 7 HOH *433(H2 O) HELIX 1 1 ASP A 43 ASN A 58 1 16 HELIX 2 2 LEU A 69 ALA A 83 1 15 HELIX 3 3 ALA A 95 ASP A 105 1 11 HELIX 4 4 PRO A 120 TRP A 122 5 3 HELIX 5 5 PRO A 144 PHE A 146 5 3 HELIX 6 6 THR A 154 HIS A 165 1 12 HELIX 7 7 HIS A 165 HIS A 170 1 6 HELIX 8 8 GLY A 182 PHE A 195 1 14 HELIX 9 9 ASP A 197 ALA A 208 1 12 HELIX 10 10 THR A 215 ASP A 225 1 11 HELIX 11 11 GLY A 236 HIS A 246 1 11 HELIX 12 12 ASN A 273 SER A 286 1 14 HELIX 13 13 SER A 286 LEU A 297 1 12 HELIX 14 14 THR A 311 GLY A 320 1 10 HELIX 15 15 GLY A 331 TYR A 335 5 5 HELIX 16 16 ASP A 337 SER A 354 1 18 HELIX 17 17 ASP B 43 ASN B 58 1 16 HELIX 18 18 LEU B 69 ALA B 83 1 15 HELIX 19 19 ALA B 95 ASP B 105 1 11 HELIX 20 20 MET B 115 TRP B 119 5 5 HELIX 21 21 PRO B 120 TRP B 122 5 3 HELIX 22 22 PRO B 144 PHE B 146 5 3 HELIX 23 23 THR B 154 HIS B 165 1 12 HELIX 24 24 HIS B 165 HIS B 170 1 6 HELIX 25 25 SER B 181 PHE B 195 1 15 HELIX 26 26 ASP B 197 ALA B 208 1 12 HELIX 27 27 THR B 215 ASP B 225 1 11 HELIX 28 28 GLY B 236 SER B 244 1 9 HELIX 29 29 ASN B 273 SER B 286 1 14 HELIX 30 30 SER B 286 LEU B 297 1 12 HELIX 31 31 THR B 311 GLY B 320 1 10 HELIX 32 32 PRO B 330 TYR B 335 5 6 HELIX 33 33 ASP B 337 ARG B 353 1 17 SHEET 1 A12 ALA A 108 GLN A 109 0 SHEET 2 A12 ILE A 264 PRO A 268 -1 O VAL A 267 N GLN A 109 SHEET 3 A12 PHE A 90 SER A 93 -1 N SER A 93 O ILE A 264 SHEET 4 A12 THR A 35 SER A 40 1 N TYR A 39 O PHE A 90 SHEET 5 A12 ALA A 62 ASP A 67 1 O HIS A 64 N LEU A 36 SHEET 6 A12 ALA A 17 PHE A 24 -1 N PHE A 24 O VAL A 63 SHEET 7 A12 ALA B 17 PHE B 24 -1 O VAL B 21 N ALA A 19 SHEET 8 A12 ILE B 61 ASP B 67 -1 O ASP B 67 N GLN B 20 SHEET 9 A12 GLN B 34 SER B 40 1 N LEU B 36 O HIS B 64 SHEET 10 A12 PHE B 90 SER B 93 1 O PHE B 90 N TYR B 39 SHEET 11 A12 ILE B 264 PRO B 268 -1 O LEU B 266 N ALA B 91 SHEET 12 A12 ALA B 108 GLN B 109 -1 N GLN B 109 O VAL B 267 SHEET 1 B14 ASN A 124 TRP A 125 0 SHEET 2 B14 ALA A 129 ALA A 131 -1 O ALA A 129 N TRP A 125 SHEET 3 B14 ILE A 264 PRO A 268 -1 O GLY A 265 N TYR A 130 SHEET 4 B14 PHE A 90 SER A 93 -1 N SER A 93 O ILE A 264 SHEET 5 B14 THR A 35 SER A 40 1 N TYR A 39 O PHE A 90 SHEET 6 B14 ALA A 62 ASP A 67 1 O HIS A 64 N LEU A 36 SHEET 7 B14 ALA A 17 PHE A 24 -1 N PHE A 24 O VAL A 63 SHEET 8 B14 ALA B 17 PHE B 24 -1 O VAL B 21 N ALA A 19 SHEET 9 B14 ILE B 61 ASP B 67 -1 O ASP B 67 N GLN B 20 SHEET 10 B14 GLN B 34 SER B 40 1 N LEU B 36 O HIS B 64 SHEET 11 B14 PHE B 90 SER B 93 1 O PHE B 90 N TYR B 39 SHEET 12 B14 ILE B 264 PRO B 268 -1 O LEU B 266 N ALA B 91 SHEET 13 B14 ALA B 129 ALA B 131 -1 N TYR B 130 O GLY B 265 SHEET 14 B14 ASN B 124 TRP B 125 -1 N TRP B 125 O ALA B 129 SHEET 1 C 5 LYS A 211 TYR A 213 0 SHEET 2 C 5 ILE A 173 TYR A 176 1 N ILE A 173 O LYS A 211 SHEET 3 C 5 LEU A 230 LEU A 235 1 O TYR A 232 N ALA A 174 SHEET 4 C 5 GLU A 135 HIS A 142 -1 N VAL A 138 O ILE A 234 SHEET 5 C 5 VAL A 249 VAL A 252 -1 O GLY A 250 N TYR A 141 SHEET 1 D 6 LYS A 211 TYR A 213 0 SHEET 2 D 6 ILE A 173 TYR A 176 1 N ILE A 173 O LYS A 211 SHEET 3 D 6 LEU A 230 LEU A 235 1 O TYR A 232 N ALA A 174 SHEET 4 D 6 GLU A 135 HIS A 142 -1 N VAL A 138 O ILE A 234 SHEET 5 D 6 THR A 258 MET A 261 -1 O MET A 261 N GLU A 135 SHEET 6 D 6 LEU A 323 PRO A 325 1 O ARG A 324 N THR A 258 SHEET 1 E 5 LYS B 211 TYR B 213 0 SHEET 2 E 5 ILE B 173 TYR B 176 1 N ILE B 173 O LYS B 211 SHEET 3 E 5 LEU B 230 LEU B 235 1 O TYR B 232 N ALA B 174 SHEET 4 E 5 GLU B 135 HIS B 142 -1 N VAL B 138 O ILE B 234 SHEET 5 E 5 VAL B 249 VAL B 252 -1 O GLY B 250 N TYR B 141 SHEET 1 F 6 LYS B 211 TYR B 213 0 SHEET 2 F 6 ILE B 173 TYR B 176 1 N ILE B 173 O LYS B 211 SHEET 3 F 6 LEU B 230 LEU B 235 1 O TYR B 232 N ALA B 174 SHEET 4 F 6 GLU B 135 HIS B 142 -1 N VAL B 138 O ILE B 234 SHEET 5 F 6 THR B 258 MET B 261 -1 O MET B 261 N GLU B 135 SHEET 6 F 6 LEU B 323 PRO B 325 1 O ARG B 324 N THR B 258 LINK O SER A 41 MG MG A 401 1555 1555 2.27 LINK OD1 ASP A 43 MG MG A 401 1555 1555 2.32 LINK MG MG A 401 O2 CIT A 402 1555 1555 2.48 LINK MG MG A 401 O7 CIT A 402 1555 1555 2.36 LINK MG MG A 401 O HOH A 414 1555 1555 2.28 LINK O SER B 41 MG MG B 401 1555 1555 2.29 LINK OD1 ASP B 43 MG MG B 401 1555 1555 2.37 LINK MG MG B 401 O1 CIT B 402 1555 1555 2.49 LINK MG MG B 401 O7 CIT B 402 1555 1555 2.48 LINK MG MG B 401 O HOH B 425 1555 1555 2.27 SITE 1 AC1 3 SER A 41 ASP A 43 TYR A 238 SITE 1 AC2 2 SER B 41 ASP B 43 SITE 1 AC3 13 SER B 41 ASP B 43 LEU B 69 THR B 70 SITE 2 AC3 13 SER B 94 TYR B 176 SER B 181 GLY B 182 SITE 3 AC3 13 SER B 214 THR B 215 SER B 216 TYR B 238 SITE 4 AC3 13 ARG B 263 SITE 1 AC4 13 SER A 41 ASP A 43 LEU A 69 THR A 70 SITE 2 AC4 13 SER A 94 TYR A 176 GLY A 182 SER A 214 SITE 3 AC4 13 THR A 215 SER A 216 LEU A 235 TYR A 238 SITE 4 AC4 13 ARG A 263 CRYST1 75.313 86.947 109.642 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009121 0.00000