data_3C9M # _entry.id 3C9M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3C9M pdb_00003c9m 10.2210/pdb3c9m/pdb RCSB RCSB046514 ? ? WWPDB D_1000046514 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2J4Y _pdbx_database_related.details ;THIS ENTRY 3C9M REFLECTS AN ALTERNATIVE MODELING OF X-RAY DATA R2J4YSF. Diffraction data and coordinates for 2J4Y were transformed to space group P6(4). ; _pdbx_database_related.content_type re-refinement # _pdbx_database_status.entry_id 3C9M _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-02-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Stenkamp, R.E.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Alternative models for two crystal structures of bovine rhodopsin.' 'Acta Crystallogr.,Sect.D' 64 902 904 2008 ABCRE6 DK 0907-4449 0766 ? 18645239 10.1107/S0907444908017162 original_data_1 'Crystal structure of a thermally stable rhodopsin mutant' J.Mol.Biol. 372 1179 1188 2007 JMOBAK UK 0022-2836 0070 ? 17825322 10.1016/j.jmb.2007.03.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stenkamp, R.E.' 1 ? original_data_1 'Standfuss, J.' 2 ? original_data_1 'Xie, G.' 3 ? original_data_1 'Edwards, P.C.' 4 ? original_data_1 'Burghammer, M.' 5 ? original_data_1 'Oprian, D.D.' 6 ? original_data_1 'Schertler, G.F.' 7 ? # _cell.entry_id 3C9M _cell.length_a 109.300 _cell.length_b 109.300 _cell.length_c 77.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3C9M _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Rhodopsin 39008.551 1 ? 'N2C, D282C' ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 3 non-polymer syn 'ACETYL GROUP' 44.053 1 ? ? ? ? 4 non-polymer syn RETINAL 284.436 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA ; _entity_poly.pdbx_seq_one_letter_code_can ;MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 CYS n 1 3 GLY n 1 4 THR n 1 5 GLU n 1 6 GLY n 1 7 PRO n 1 8 ASN n 1 9 PHE n 1 10 TYR n 1 11 VAL n 1 12 PRO n 1 13 PHE n 1 14 SER n 1 15 ASN n 1 16 LYS n 1 17 THR n 1 18 GLY n 1 19 VAL n 1 20 VAL n 1 21 ARG n 1 22 SER n 1 23 PRO n 1 24 PHE n 1 25 GLU n 1 26 ALA n 1 27 PRO n 1 28 GLN n 1 29 TYR n 1 30 TYR n 1 31 LEU n 1 32 ALA n 1 33 GLU n 1 34 PRO n 1 35 TRP n 1 36 GLN n 1 37 PHE n 1 38 SER n 1 39 MET n 1 40 LEU n 1 41 ALA n 1 42 ALA n 1 43 TYR n 1 44 MET n 1 45 PHE n 1 46 LEU n 1 47 LEU n 1 48 ILE n 1 49 MET n 1 50 LEU n 1 51 GLY n 1 52 PHE n 1 53 PRO n 1 54 ILE n 1 55 ASN n 1 56 PHE n 1 57 LEU n 1 58 THR n 1 59 LEU n 1 60 TYR n 1 61 VAL n 1 62 THR n 1 63 VAL n 1 64 GLN n 1 65 HIS n 1 66 LYS n 1 67 LYS n 1 68 LEU n 1 69 ARG n 1 70 THR n 1 71 PRO n 1 72 LEU n 1 73 ASN n 1 74 TYR n 1 75 ILE n 1 76 LEU n 1 77 LEU n 1 78 ASN n 1 79 LEU n 1 80 ALA n 1 81 VAL n 1 82 ALA n 1 83 ASP n 1 84 LEU n 1 85 PHE n 1 86 MET n 1 87 VAL n 1 88 PHE n 1 89 GLY n 1 90 GLY n 1 91 PHE n 1 92 THR n 1 93 THR n 1 94 THR n 1 95 LEU n 1 96 TYR n 1 97 THR n 1 98 SER n 1 99 LEU n 1 100 HIS n 1 101 GLY n 1 102 TYR n 1 103 PHE n 1 104 VAL n 1 105 PHE n 1 106 GLY n 1 107 PRO n 1 108 THR n 1 109 GLY n 1 110 CYS n 1 111 ASN n 1 112 LEU n 1 113 GLU n 1 114 GLY n 1 115 PHE n 1 116 PHE n 1 117 ALA n 1 118 THR n 1 119 LEU n 1 120 GLY n 1 121 GLY n 1 122 GLU n 1 123 ILE n 1 124 ALA n 1 125 LEU n 1 126 TRP n 1 127 SER n 1 128 LEU n 1 129 VAL n 1 130 VAL n 1 131 LEU n 1 132 ALA n 1 133 ILE n 1 134 GLU n 1 135 ARG n 1 136 TYR n 1 137 VAL n 1 138 VAL n 1 139 VAL n 1 140 CYS n 1 141 LYS n 1 142 PRO n 1 143 MET n 1 144 SER n 1 145 ASN n 1 146 PHE n 1 147 ARG n 1 148 PHE n 1 149 GLY n 1 150 GLU n 1 151 ASN n 1 152 HIS n 1 153 ALA n 1 154 ILE n 1 155 MET n 1 156 GLY n 1 157 VAL n 1 158 ALA n 1 159 PHE n 1 160 THR n 1 161 TRP n 1 162 VAL n 1 163 MET n 1 164 ALA n 1 165 LEU n 1 166 ALA n 1 167 CYS n 1 168 ALA n 1 169 ALA n 1 170 PRO n 1 171 PRO n 1 172 LEU n 1 173 VAL n 1 174 GLY n 1 175 TRP n 1 176 SER n 1 177 ARG n 1 178 TYR n 1 179 ILE n 1 180 PRO n 1 181 GLU n 1 182 GLY n 1 183 MET n 1 184 GLN n 1 185 CYS n 1 186 SER n 1 187 CYS n 1 188 GLY n 1 189 ILE n 1 190 ASP n 1 191 TYR n 1 192 TYR n 1 193 THR n 1 194 PRO n 1 195 HIS n 1 196 GLU n 1 197 GLU n 1 198 THR n 1 199 ASN n 1 200 ASN n 1 201 GLU n 1 202 SER n 1 203 PHE n 1 204 VAL n 1 205 ILE n 1 206 TYR n 1 207 MET n 1 208 PHE n 1 209 VAL n 1 210 VAL n 1 211 HIS n 1 212 PHE n 1 213 ILE n 1 214 ILE n 1 215 PRO n 1 216 LEU n 1 217 ILE n 1 218 VAL n 1 219 ILE n 1 220 PHE n 1 221 PHE n 1 222 CYS n 1 223 TYR n 1 224 GLY n 1 225 GLN n 1 226 LEU n 1 227 VAL n 1 228 PHE n 1 229 THR n 1 230 VAL n 1 231 LYS n 1 232 GLU n 1 233 ALA n 1 234 ALA n 1 235 ALA n 1 236 GLN n 1 237 GLN n 1 238 GLN n 1 239 GLU n 1 240 SER n 1 241 ALA n 1 242 THR n 1 243 THR n 1 244 GLN n 1 245 LYS n 1 246 ALA n 1 247 GLU n 1 248 LYS n 1 249 GLU n 1 250 VAL n 1 251 THR n 1 252 ARG n 1 253 MET n 1 254 VAL n 1 255 ILE n 1 256 ILE n 1 257 MET n 1 258 VAL n 1 259 ILE n 1 260 ALA n 1 261 PHE n 1 262 LEU n 1 263 ILE n 1 264 CYS n 1 265 TRP n 1 266 LEU n 1 267 PRO n 1 268 TYR n 1 269 ALA n 1 270 GLY n 1 271 VAL n 1 272 ALA n 1 273 PHE n 1 274 TYR n 1 275 ILE n 1 276 PHE n 1 277 THR n 1 278 HIS n 1 279 GLN n 1 280 GLY n 1 281 SER n 1 282 CYS n 1 283 PHE n 1 284 GLY n 1 285 PRO n 1 286 ILE n 1 287 PHE n 1 288 MET n 1 289 THR n 1 290 ILE n 1 291 PRO n 1 292 ALA n 1 293 PHE n 1 294 PHE n 1 295 ALA n 1 296 LYS n 1 297 THR n 1 298 SER n 1 299 ALA n 1 300 VAL n 1 301 TYR n 1 302 ASN n 1 303 PRO n 1 304 VAL n 1 305 ILE n 1 306 TYR n 1 307 ILE n 1 308 MET n 1 309 MET n 1 310 ASN n 1 311 LYS n 1 312 GLN n 1 313 PHE n 1 314 ARG n 1 315 ASN n 1 316 CYS n 1 317 MET n 1 318 VAL n 1 319 THR n 1 320 THR n 1 321 LEU n 1 322 CYS n 1 323 CYS n 1 324 GLY n 1 325 LYS n 1 326 ASN n 1 327 PRO n 1 328 LEU n 1 329 GLY n 1 330 ASP n 1 331 ASP n 1 332 GLU n 1 333 ALA n 1 334 SER n 1 335 THR n 1 336 THR n 1 337 VAL n 1 338 SER n 1 339 LYS n 1 340 THR n 1 341 GLU n 1 342 THR n 1 343 SER n 1 344 GLN n 1 345 VAL n 1 346 ALA n 1 347 PRO n 1 348 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name Bovine _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id ? _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OPSD_BOVIN _struct_ref.pdbx_db_accession P02699 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3C9M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 348 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02699 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 348 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 348 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3C9M CYS A 2 ? UNP P02699 ASN 2 'engineered mutation' 2 1 1 3C9M CYS A 282 ? UNP P02699 ASP 282 'engineered mutation' 282 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3C9M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.43 _exptl_crystal.density_percent_sol 64.19 _exptl_crystal.description 'AUTHOR USED THE SF DATA FROM ENTRY 2J4Y.' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 3C9M _refine.ls_d_res_high 3.400 _refine.ls_d_res_low 40.420 _refine.pdbx_ls_sigma_F 2.05 _refine.ls_percent_reflns_obs 99.800 _refine.ls_number_reflns_obs 7353 _refine.ls_R_factor_obs 0.176 _refine.ls_R_factor_R_work 0.174 _refine.ls_R_factor_R_free 0.219 _refine.ls_percent_reflns_R_free 4.640 _refine.ls_number_reflns_R_free 341 _refine.ls_number_reflns_R_work 7012 _refine.B_iso_mean 72.082 _refine.solvent_model_param_bsol 45.656 _refine.solvent_model_param_ksol 0.299 _refine.aniso_B[1][1] 0.981 _refine.aniso_B[2][2] 0.981 _refine.aniso_B[3][3] -1.961 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values TWIN_LSQ_F _refine.B_iso_max 145.12 _refine.B_iso_min 38.57 _refine.pdbx_overall_phase_error 32.930 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_starting_model 'The A chain of PDB entry 2J4Y, after suitable transformation into this space group.' _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_ion_probe_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2589 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2626 _refine_hist.d_res_high 3.400 _refine_hist.d_res_low 40.420 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 2714 0.012 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 3695 1.495 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 410 0.142 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 459 0.008 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 917 20.334 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 3.400 3.742 4 98.000 1735 . 0.210 0.287 . 79 . 1814 . . 'X-RAY DIFFRACTION' 3.742 4.283 4 98.000 1727 . 0.182 0.228 . 101 . 1828 . . 'X-RAY DIFFRACTION' 4.283 5.394 4 98.000 1766 . 0.147 0.179 . 70 . 1836 . . 'X-RAY DIFFRACTION' 5.394 40.423 4 98.000 1784 . 0.174 0.211 . 91 . 1875 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3C9M _struct.title 'Structure of a mutant bovine rhodopsin in hexagonal crystal form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3C9M _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;chromophore, lipoprotein, glycoprotein, sensory transduction, photoreceptor protein, integral membrane protein, G-protein coupled receptor, vision membrane, receptor, palmitate, transducer, retinal protein, phosphorylation, signaling protein, photoreceptor, transmembrane, visual pigment, alternate space group, Phosphoprotein ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TRP A 35 ? LEU A 57 ? TRP A 35 LEU A 57 1 ? 23 HELX_P HELX_P2 2 LEU A 57 ? HIS A 65 ? LEU A 57 HIS A 65 1 ? 9 HELX_P HELX_P3 3 THR A 70 ? HIS A 100 ? THR A 70 HIS A 100 1 ? 31 HELX_P HELX_P4 4 GLY A 106 ? VAL A 139 ? GLY A 106 VAL A 139 1 ? 34 HELX_P HELX_P5 5 GLY A 149 ? GLY A 174 ? GLY A 149 GLY A 174 1 ? 26 HELX_P HELX_P6 6 ASN A 199 ? PHE A 212 ? ASN A 199 PHE A 212 1 ? 14 HELX_P HELX_P7 7 PHE A 212 ? LEU A 226 ? PHE A 212 LEU A 226 1 ? 15 HELX_P HELX_P8 8 LYS A 231 ? GLN A 236 ? LYS A 231 GLN A 236 1 ? 6 HELX_P HELX_P9 9 THR A 242 ? HIS A 278 ? THR A 242 HIS A 278 1 ? 37 HELX_P HELX_P10 10 MET A 288 ? LYS A 296 ? MET A 288 LYS A 296 1 ? 9 HELX_P HELX_P11 11 THR A 297 ? VAL A 300 ? THR A 297 VAL A 300 5 ? 4 HELX_P HELX_P12 12 TYR A 301 ? ASN A 310 ? TYR A 301 ASN A 310 1 ? 10 HELX_P HELX_P13 13 ASN A 310 ? CYS A 323 ? ASN A 310 CYS A 323 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 282 SG ? ? A CYS 2 A CYS 282 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 110 SG ? ? ? 1_555 A CYS 187 SG ? ? A CYS 110 A CYS 187 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale both ? C ACE . C ? ? ? 1_555 A MET 1 N ? ? A ACE 0 A MET 1 1_555 ? ? ? ? ? ? ? 1.266 ? ? covale2 covale one ? A ASN 15 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 15 A NAG 1335 1_555 ? ? ? ? ? ? ? 1.481 ? N-Glycosylation covale3 covale one ? A LYS 296 NZ ? ? ? 1_555 D RET . C15 ? ? A LYS 296 A RET 1332 1_555 ? ? ? ? ? ? ? 1.320 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _atom_sites.entry_id 3C9M _atom_sites.fract_transf_matrix[1][1] 0.009149 _atom_sites.fract_transf_matrix[1][2] 0.005282 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010565 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012870 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'MET A 1 HAS WRONG CHIRALITY AT ATOM CA' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 CYS 110 110 110 CYS CYS A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 TRP 126 126 126 TRP TRP A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 TYR 136 136 136 TYR TYR A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 CYS 140 140 140 CYS CYS A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 MET 143 143 143 MET MET A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 HIS 152 152 152 HIS HIS A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 MET 155 155 155 MET MET A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 TRP 161 161 161 TRP TRP A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 MET 163 163 163 MET MET A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 CYS 167 167 167 CYS CYS A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 PRO 170 170 170 PRO PRO A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 TRP 175 175 175 TRP TRP A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 TYR 178 178 178 TYR TYR A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 PRO 180 180 180 PRO PRO A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 MET 183 183 183 MET MET A . n A 1 184 GLN 184 184 184 GLN GLN A . n A 1 185 CYS 185 185 185 CYS CYS A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 CYS 187 187 187 CYS CYS A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 ASP 190 190 190 ASP ASP A . n A 1 191 TYR 191 191 191 TYR TYR A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 HIS 195 195 195 HIS HIS A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 ASN 199 199 199 ASN ASN A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 SER 202 202 202 SER SER A . n A 1 203 PHE 203 203 203 PHE PHE A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 ILE 205 205 205 ILE ILE A . n A 1 206 TYR 206 206 206 TYR TYR A . n A 1 207 MET 207 207 207 MET MET A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 VAL 210 210 210 VAL VAL A . n A 1 211 HIS 211 211 211 HIS HIS A . n A 1 212 PHE 212 212 212 PHE PHE A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 PRO 215 215 215 PRO PRO A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 VAL 218 218 218 VAL VAL A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 PHE 220 220 220 PHE PHE A . n A 1 221 PHE 221 221 221 PHE PHE A . n A 1 222 CYS 222 222 222 CYS CYS A . n A 1 223 TYR 223 223 223 TYR TYR A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 GLN 225 225 225 GLN GLN A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 PHE 228 228 228 PHE PHE A . n A 1 229 THR 229 229 229 THR THR A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 ALA 235 235 235 ALA ALA A . n A 1 236 GLN 236 236 236 GLN GLN A . n A 1 237 GLN 237 237 237 GLN GLN A . n A 1 238 GLN 238 238 238 GLN GLN A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 SER 240 240 240 SER SER A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 THR 242 242 242 THR THR A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 LYS 245 245 245 LYS LYS A . n A 1 246 ALA 246 246 246 ALA ALA A . n A 1 247 GLU 247 247 247 GLU GLU A . n A 1 248 LYS 248 248 248 LYS LYS A . n A 1 249 GLU 249 249 249 GLU GLU A . n A 1 250 VAL 250 250 250 VAL VAL A . n A 1 251 THR 251 251 251 THR THR A . n A 1 252 ARG 252 252 252 ARG ARG A . n A 1 253 MET 253 253 253 MET MET A . n A 1 254 VAL 254 254 254 VAL VAL A . n A 1 255 ILE 255 255 255 ILE ILE A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 MET 257 257 257 MET MET A . n A 1 258 VAL 258 258 258 VAL VAL A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 PHE 261 261 261 PHE PHE A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 ILE 263 263 263 ILE ILE A . n A 1 264 CYS 264 264 264 CYS CYS A . n A 1 265 TRP 265 265 265 TRP TRP A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 PRO 267 267 267 PRO PRO A . n A 1 268 TYR 268 268 268 TYR TYR A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 GLY 270 270 270 GLY GLY A . n A 1 271 VAL 271 271 271 VAL VAL A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 PHE 273 273 273 PHE PHE A . n A 1 274 TYR 274 274 274 TYR TYR A . n A 1 275 ILE 275 275 275 ILE ILE A . n A 1 276 PHE 276 276 276 PHE PHE A . n A 1 277 THR 277 277 277 THR THR A . n A 1 278 HIS 278 278 278 HIS HIS A . n A 1 279 GLN 279 279 279 GLN GLN A . n A 1 280 GLY 280 280 280 GLY GLY A . n A 1 281 SER 281 281 281 SER SER A . n A 1 282 CYS 282 282 282 CYS CYS A . n A 1 283 PHE 283 283 283 PHE PHE A . n A 1 284 GLY 284 284 284 GLY GLY A . n A 1 285 PRO 285 285 285 PRO PRO A . n A 1 286 ILE 286 286 286 ILE ILE A . n A 1 287 PHE 287 287 287 PHE PHE A . n A 1 288 MET 288 288 288 MET MET A . n A 1 289 THR 289 289 289 THR THR A . n A 1 290 ILE 290 290 290 ILE ILE A . n A 1 291 PRO 291 291 291 PRO PRO A . n A 1 292 ALA 292 292 292 ALA ALA A . n A 1 293 PHE 293 293 293 PHE PHE A . n A 1 294 PHE 294 294 294 PHE PHE A . n A 1 295 ALA 295 295 295 ALA ALA A . n A 1 296 LYS 296 296 296 LYS LYS A . n A 1 297 THR 297 297 297 THR THR A . n A 1 298 SER 298 298 298 SER SER A . n A 1 299 ALA 299 299 299 ALA ALA A . n A 1 300 VAL 300 300 300 VAL VAL A . n A 1 301 TYR 301 301 301 TYR TYR A . n A 1 302 ASN 302 302 302 ASN ASN A . n A 1 303 PRO 303 303 303 PRO PRO A . n A 1 304 VAL 304 304 304 VAL VAL A . n A 1 305 ILE 305 305 305 ILE ILE A . n A 1 306 TYR 306 306 306 TYR TYR A . n A 1 307 ILE 307 307 307 ILE ILE A . n A 1 308 MET 308 308 308 MET MET A . n A 1 309 MET 309 309 309 MET MET A . n A 1 310 ASN 310 310 310 ASN ASN A . n A 1 311 LYS 311 311 311 LYS LYS A . n A 1 312 GLN 312 312 312 GLN GLN A . n A 1 313 PHE 313 313 313 PHE PHE A . n A 1 314 ARG 314 314 314 ARG ARG A . n A 1 315 ASN 315 315 315 ASN ASN A . n A 1 316 CYS 316 316 316 CYS CYS A . n A 1 317 MET 317 317 317 MET MET A . n A 1 318 VAL 318 318 318 VAL VAL A . n A 1 319 THR 319 319 319 THR THR A . n A 1 320 THR 320 320 320 THR THR A . n A 1 321 LEU 321 321 321 LEU LEU A . n A 1 322 CYS 322 322 322 CYS CYS A . n A 1 323 CYS 323 323 323 CYS CYS A . n A 1 324 GLY 324 324 324 GLY GLY A . n A 1 325 LYS 325 325 325 LYS LYS A . n A 1 326 ASN 326 326 326 ASN ASN A . n A 1 327 PRO 327 327 327 PRO PRO A . n A 1 328 LEU 328 328 ? ? ? A . n A 1 329 GLY 329 329 ? ? ? A . n A 1 330 ASP 330 330 ? ? ? A . n A 1 331 ASP 331 331 ? ? ? A . n A 1 332 GLU 332 332 ? ? ? A . n A 1 333 ALA 333 333 ? ? ? A . n A 1 334 SER 334 334 ? ? ? A . n A 1 335 THR 335 335 ? ? ? A . n A 1 336 THR 336 336 ? ? ? A . n A 1 337 VAL 337 337 ? ? ? A . n A 1 338 SER 338 338 ? ? ? A . n A 1 339 LYS 339 339 ? ? ? A . n A 1 340 THR 340 340 ? ? ? A . n A 1 341 GLU 341 341 ? ? ? A . n A 1 342 THR 342 342 ? ? ? A . n A 1 343 SER 343 343 ? ? ? A . n A 1 344 GLN 344 344 ? ? ? A . n A 1 345 VAL 345 345 ? ? ? A . n A 1 346 ALA 346 346 ? ? ? A . n A 1 347 PRO 347 347 ? ? ? A . n A 1 348 ALA 348 348 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 1335 1335 NAG NAG A . C 3 ACE 1 0 0 ACE ACE A . D 4 RET 1 1332 1332 RET RET A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 15 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 15 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-10-05 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2020-07-29 6 'Structure model' 1 5 2021-10-20 7 'Structure model' 1 6 2023-08-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Other 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Structure summary' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Structure summary' 13 7 'Structure model' 'Data collection' 14 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 4 'Structure model' struct_conn 3 5 'Structure model' chem_comp 4 5 'Structure model' database_PDB_caveat 5 5 'Structure model' entity 6 5 'Structure model' pdbx_chem_comp_identifier 7 5 'Structure model' pdbx_entity_nonpoly 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_site 10 5 'Structure model' struct_site_gen 11 6 'Structure model' chem_comp 12 6 'Structure model' database_2 13 6 'Structure model' struct_ref_seq_dif 14 7 'Structure model' chem_comp_atom 15 7 'Structure model' chem_comp_bond 16 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.contact_author' 2 4 'Structure model' '_software.contact_author_email' 3 4 'Structure model' '_software.language' 4 4 'Structure model' '_software.location' 5 4 'Structure model' '_software.name' 6 4 'Structure model' '_software.type' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 5 'Structure model' '_chem_comp.name' 9 5 'Structure model' '_chem_comp.type' 10 5 'Structure model' '_entity.pdbx_description' 11 5 'Structure model' '_pdbx_entity_nonpoly.name' 12 5 'Structure model' '_struct_conn.pdbx_dist_value' 13 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 5 'Structure model' '_struct_conn.pdbx_role' 15 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 6 'Structure model' '_chem_comp.pdbx_synonyms' 28 6 'Structure model' '_database_2.pdbx_DOI' 29 6 'Structure model' '_database_2.pdbx_database_accession' 30 6 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal PHENIX . ? ? ? ? refinement ? ? ? 1 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 # _pdbx_database_remark.id 0 _pdbx_database_remark.text ;This entry 3C9M reflects an alternative modeling of the structural data in R2J4YSF, original data determined by author: J.STANDFUSS,G.XIE,P.EDWARDS,M.BURGHAMMER,D.D.OPRIAN,G.F.X.SCHERTLER ; # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ASN _pdbx_validate_rmsd_bond.auth_seq_id_1 326 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 PRO _pdbx_validate_rmsd_bond.auth_seq_id_2 327 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.518 _pdbx_validate_rmsd_bond.bond_target_value 1.338 _pdbx_validate_rmsd_bond.bond_deviation 0.180 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A MET 1 ? ? CA A MET 1 ? ? C A MET 1 ? ? 125.24 110.40 14.84 2.00 N 2 1 N A MET 1 ? ? CA A MET 1 ? ? CB A MET 1 ? ? 128.38 110.60 17.78 1.80 N 3 1 CA A CYS 2 ? ? CB A CYS 2 ? ? SG A CYS 2 ? ? 121.82 114.20 7.62 1.10 N 4 1 C A ALA 26 ? ? N A PRO 27 ? ? CA A PRO 27 ? ? 128.37 119.30 9.07 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 2 ? ? -73.78 -90.09 2 1 PRO A 12 ? ? -84.61 45.64 3 1 PRO A 23 ? ? -64.90 13.60 4 1 PRO A 27 ? ? -34.01 142.83 5 1 ALA A 32 ? ? -135.55 -157.57 6 1 PRO A 34 ? ? -57.46 -3.13 7 1 LEU A 59 ? ? -65.21 10.76 8 1 TYR A 60 ? ? -137.62 -39.30 9 1 LYS A 66 ? ? -94.28 -74.34 10 1 TYR A 102 ? ? 161.43 155.67 11 1 CYS A 110 ? ? -65.98 2.13 12 1 PHE A 116 ? ? -71.68 23.52 13 1 ALA A 117 ? ? -135.66 -49.37 14 1 VAL A 139 ? ? -68.37 -72.91 15 1 CYS A 140 ? ? -90.61 57.60 16 1 LYS A 141 ? ? -29.08 119.03 17 1 PRO A 142 ? ? -51.63 -122.81 18 1 MET A 143 ? ? -91.82 -112.03 19 1 SER A 144 ? ? -83.81 -157.53 20 1 PHE A 146 ? ? -98.76 33.24 21 1 ARG A 147 ? ? -37.64 128.65 22 1 PHE A 148 ? ? -18.85 114.50 23 1 VAL A 162 ? ? -63.35 -76.19 24 1 SER A 176 ? ? 95.63 -149.94 25 1 ARG A 177 ? ? 171.78 139.62 26 1 ILE A 189 ? ? -4.51 121.46 27 1 ASP A 190 ? ? -58.95 82.18 28 1 TYR A 192 ? ? -94.92 -65.93 29 1 HIS A 195 ? ? -10.44 126.15 30 1 GLU A 197 ? ? -62.40 8.14 31 1 ASN A 199 ? ? 49.12 29.58 32 1 ASN A 200 ? ? -17.15 -75.36 33 1 SER A 202 ? ? -59.90 -75.09 34 1 PHE A 212 ? ? -151.19 -76.05 35 1 ILE A 213 ? ? -45.74 -78.32 36 1 GLN A 225 ? ? -39.90 -20.51 37 1 LEU A 226 ? ? -82.62 46.56 38 1 VAL A 227 ? ? -154.66 8.21 39 1 VAL A 230 ? ? -60.56 12.04 40 1 LYS A 231 ? ? -149.33 -102.38 41 1 ALA A 233 ? ? -69.69 28.53 42 1 ALA A 234 ? ? -135.66 -46.18 43 1 GLN A 237 ? ? -69.77 99.17 44 1 ALA A 241 ? ? -64.13 13.08 45 1 GLN A 244 ? ? -70.25 43.77 46 1 LYS A 245 ? ? -146.79 -55.05 47 1 VAL A 258 ? ? -66.18 -71.44 48 1 HIS A 278 ? ? -85.64 43.70 49 1 VAL A 300 ? ? -150.65 -45.24 50 1 CYS A 323 ? ? 65.87 120.62 51 1 ASN A 326 ? ? -59.10 -73.49 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 MET _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 1 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 CYS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 2 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 136.23 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id MET _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 1 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -16.23 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id MET _pdbx_validate_chiral.auth_seq_id 1 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PRO 327 ? CA ? A PRO 327 CA 2 1 Y 1 A PRO 327 ? C ? A PRO 327 C 3 1 Y 1 A PRO 327 ? O ? A PRO 327 O 4 1 Y 1 A PRO 327 ? CB ? A PRO 327 CB 5 1 Y 1 A PRO 327 ? CG ? A PRO 327 CG 6 1 Y 1 A PRO 327 ? CD ? A PRO 327 CD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 328 ? A LEU 328 2 1 Y 1 A GLY 329 ? A GLY 329 3 1 Y 1 A ASP 330 ? A ASP 330 4 1 Y 1 A ASP 331 ? A ASP 331 5 1 Y 1 A GLU 332 ? A GLU 332 6 1 Y 1 A ALA 333 ? A ALA 333 7 1 Y 1 A SER 334 ? A SER 334 8 1 Y 1 A THR 335 ? A THR 335 9 1 Y 1 A THR 336 ? A THR 336 10 1 Y 1 A VAL 337 ? A VAL 337 11 1 Y 1 A SER 338 ? A SER 338 12 1 Y 1 A LYS 339 ? A LYS 339 13 1 Y 1 A THR 340 ? A THR 340 14 1 Y 1 A GLU 341 ? A GLU 341 15 1 Y 1 A THR 342 ? A THR 342 16 1 Y 1 A SER 343 ? A SER 343 17 1 Y 1 A GLN 344 ? A GLN 344 18 1 Y 1 A VAL 345 ? A VAL 345 19 1 Y 1 A ALA 346 ? A ALA 346 20 1 Y 1 A PRO 347 ? A PRO 347 21 1 Y 1 A ALA 348 ? A ALA 348 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 CYS N N N N 81 CYS CA C N R 82 CYS C C N N 83 CYS O O N N 84 CYS CB C N N 85 CYS SG S N N 86 CYS OXT O N N 87 CYS H H N N 88 CYS H2 H N N 89 CYS HA H N N 90 CYS HB2 H N N 91 CYS HB3 H N N 92 CYS HG H N N 93 CYS HXT H N N 94 GLN N N N N 95 GLN CA C N S 96 GLN C C N N 97 GLN O O N N 98 GLN CB C N N 99 GLN CG C N N 100 GLN CD C N N 101 GLN OE1 O N N 102 GLN NE2 N N N 103 GLN OXT O N N 104 GLN H H N N 105 GLN H2 H N N 106 GLN HA H N N 107 GLN HB2 H N N 108 GLN HB3 H N N 109 GLN HG2 H N N 110 GLN HG3 H N N 111 GLN HE21 H N N 112 GLN HE22 H N N 113 GLN HXT H N N 114 GLU N N N N 115 GLU CA C N S 116 GLU C C N N 117 GLU O O N N 118 GLU CB C N N 119 GLU CG C N N 120 GLU CD C N N 121 GLU OE1 O N N 122 GLU OE2 O N N 123 GLU OXT O N N 124 GLU H H N N 125 GLU H2 H N N 126 GLU HA H N N 127 GLU HB2 H N N 128 GLU HB3 H N N 129 GLU HG2 H N N 130 GLU HG3 H N N 131 GLU HE2 H N N 132 GLU HXT H N N 133 GLY N N N N 134 GLY CA C N N 135 GLY C C N N 136 GLY O O N N 137 GLY OXT O N N 138 GLY H H N N 139 GLY H2 H N N 140 GLY HA2 H N N 141 GLY HA3 H N N 142 GLY HXT H N N 143 HIS N N N N 144 HIS CA C N S 145 HIS C C N N 146 HIS O O N N 147 HIS CB C N N 148 HIS CG C Y N 149 HIS ND1 N Y N 150 HIS CD2 C Y N 151 HIS CE1 C Y N 152 HIS NE2 N Y N 153 HIS OXT O N N 154 HIS H H N N 155 HIS H2 H N N 156 HIS HA H N N 157 HIS HB2 H N N 158 HIS HB3 H N N 159 HIS HD1 H N N 160 HIS HD2 H N N 161 HIS HE1 H N N 162 HIS HE2 H N N 163 HIS HXT H N N 164 ILE N N N N 165 ILE CA C N S 166 ILE C C N N 167 ILE O O N N 168 ILE CB C N S 169 ILE CG1 C N N 170 ILE CG2 C N N 171 ILE CD1 C N N 172 ILE OXT O N N 173 ILE H H N N 174 ILE H2 H N N 175 ILE HA H N N 176 ILE HB H N N 177 ILE HG12 H N N 178 ILE HG13 H N N 179 ILE HG21 H N N 180 ILE HG22 H N N 181 ILE HG23 H N N 182 ILE HD11 H N N 183 ILE HD12 H N N 184 ILE HD13 H N N 185 ILE HXT H N N 186 LEU N N N N 187 LEU CA C N S 188 LEU C C N N 189 LEU O O N N 190 LEU CB C N N 191 LEU CG C N N 192 LEU CD1 C N N 193 LEU CD2 C N N 194 LEU OXT O N N 195 LEU H H N N 196 LEU H2 H N N 197 LEU HA H N N 198 LEU HB2 H N N 199 LEU HB3 H N N 200 LEU HG H N N 201 LEU HD11 H N N 202 LEU HD12 H N N 203 LEU HD13 H N N 204 LEU HD21 H N N 205 LEU HD22 H N N 206 LEU HD23 H N N 207 LEU HXT H N N 208 LYS N N N N 209 LYS CA C N S 210 LYS C C N N 211 LYS O O N N 212 LYS CB C N N 213 LYS CG C N N 214 LYS CD C N N 215 LYS CE C N N 216 LYS NZ N N N 217 LYS OXT O N N 218 LYS H H N N 219 LYS H2 H N N 220 LYS HA H N N 221 LYS HB2 H N N 222 LYS HB3 H N N 223 LYS HG2 H N N 224 LYS HG3 H N N 225 LYS HD2 H N N 226 LYS HD3 H N N 227 LYS HE2 H N N 228 LYS HE3 H N N 229 LYS HZ1 H N N 230 LYS HZ2 H N N 231 LYS HZ3 H N N 232 LYS HXT H N N 233 MET N N N N 234 MET CA C N S 235 MET C C N N 236 MET O O N N 237 MET CB C N N 238 MET CG C N N 239 MET SD S N N 240 MET CE C N N 241 MET OXT O N N 242 MET H H N N 243 MET H2 H N N 244 MET HA H N N 245 MET HB2 H N N 246 MET HB3 H N N 247 MET HG2 H N N 248 MET HG3 H N N 249 MET HE1 H N N 250 MET HE2 H N N 251 MET HE3 H N N 252 MET HXT H N N 253 NAG C1 C N R 254 NAG C2 C N R 255 NAG C3 C N R 256 NAG C4 C N S 257 NAG C5 C N R 258 NAG C6 C N N 259 NAG C7 C N N 260 NAG C8 C N N 261 NAG N2 N N N 262 NAG O1 O N N 263 NAG O3 O N N 264 NAG O4 O N N 265 NAG O5 O N N 266 NAG O6 O N N 267 NAG O7 O N N 268 NAG H1 H N N 269 NAG H2 H N N 270 NAG H3 H N N 271 NAG H4 H N N 272 NAG H5 H N N 273 NAG H61 H N N 274 NAG H62 H N N 275 NAG H81 H N N 276 NAG H82 H N N 277 NAG H83 H N N 278 NAG HN2 H N N 279 NAG HO1 H N N 280 NAG HO3 H N N 281 NAG HO4 H N N 282 NAG HO6 H N N 283 PHE N N N N 284 PHE CA C N S 285 PHE C C N N 286 PHE O O N N 287 PHE CB C N N 288 PHE CG C Y N 289 PHE CD1 C Y N 290 PHE CD2 C Y N 291 PHE CE1 C Y N 292 PHE CE2 C Y N 293 PHE CZ C Y N 294 PHE OXT O N N 295 PHE H H N N 296 PHE H2 H N N 297 PHE HA H N N 298 PHE HB2 H N N 299 PHE HB3 H N N 300 PHE HD1 H N N 301 PHE HD2 H N N 302 PHE HE1 H N N 303 PHE HE2 H N N 304 PHE HZ H N N 305 PHE HXT H N N 306 PRO N N N N 307 PRO CA C N S 308 PRO C C N N 309 PRO O O N N 310 PRO CB C N N 311 PRO CG C N N 312 PRO CD C N N 313 PRO OXT O N N 314 PRO H H N N 315 PRO HA H N N 316 PRO HB2 H N N 317 PRO HB3 H N N 318 PRO HG2 H N N 319 PRO HG3 H N N 320 PRO HD2 H N N 321 PRO HD3 H N N 322 PRO HXT H N N 323 RET C1 C N N 324 RET C2 C N N 325 RET C3 C N N 326 RET C4 C N N 327 RET C5 C N N 328 RET C6 C N N 329 RET C7 C N N 330 RET C8 C N N 331 RET C9 C N N 332 RET C10 C N N 333 RET C11 C N N 334 RET C12 C N N 335 RET C13 C N N 336 RET C14 C N N 337 RET C15 C N N 338 RET O1 O N N 339 RET C16 C N N 340 RET C17 C N N 341 RET C18 C N N 342 RET C19 C N N 343 RET C20 C N N 344 RET H21 H N N 345 RET H22 H N N 346 RET H31 H N N 347 RET H32 H N N 348 RET H41 H N N 349 RET H42 H N N 350 RET H7 H N N 351 RET H8 H N N 352 RET H10 H N N 353 RET H11 H N N 354 RET H12 H N N 355 RET H14 H N N 356 RET H15 H N N 357 RET H161 H N N 358 RET H162 H N N 359 RET H163 H N N 360 RET H171 H N N 361 RET H172 H N N 362 RET H173 H N N 363 RET H181 H N N 364 RET H182 H N N 365 RET H183 H N N 366 RET H191 H N N 367 RET H192 H N N 368 RET H193 H N N 369 RET H201 H N N 370 RET H202 H N N 371 RET H203 H N N 372 SER N N N N 373 SER CA C N S 374 SER C C N N 375 SER O O N N 376 SER CB C N N 377 SER OG O N N 378 SER OXT O N N 379 SER H H N N 380 SER H2 H N N 381 SER HA H N N 382 SER HB2 H N N 383 SER HB3 H N N 384 SER HG H N N 385 SER HXT H N N 386 THR N N N N 387 THR CA C N S 388 THR C C N N 389 THR O O N N 390 THR CB C N R 391 THR OG1 O N N 392 THR CG2 C N N 393 THR OXT O N N 394 THR H H N N 395 THR H2 H N N 396 THR HA H N N 397 THR HB H N N 398 THR HG1 H N N 399 THR HG21 H N N 400 THR HG22 H N N 401 THR HG23 H N N 402 THR HXT H N N 403 TRP N N N N 404 TRP CA C N S 405 TRP C C N N 406 TRP O O N N 407 TRP CB C N N 408 TRP CG C Y N 409 TRP CD1 C Y N 410 TRP CD2 C Y N 411 TRP NE1 N Y N 412 TRP CE2 C Y N 413 TRP CE3 C Y N 414 TRP CZ2 C Y N 415 TRP CZ3 C Y N 416 TRP CH2 C Y N 417 TRP OXT O N N 418 TRP H H N N 419 TRP H2 H N N 420 TRP HA H N N 421 TRP HB2 H N N 422 TRP HB3 H N N 423 TRP HD1 H N N 424 TRP HE1 H N N 425 TRP HE3 H N N 426 TRP HZ2 H N N 427 TRP HZ3 H N N 428 TRP HH2 H N N 429 TRP HXT H N N 430 TYR N N N N 431 TYR CA C N S 432 TYR C C N N 433 TYR O O N N 434 TYR CB C N N 435 TYR CG C Y N 436 TYR CD1 C Y N 437 TYR CD2 C Y N 438 TYR CE1 C Y N 439 TYR CE2 C Y N 440 TYR CZ C Y N 441 TYR OH O N N 442 TYR OXT O N N 443 TYR H H N N 444 TYR H2 H N N 445 TYR HA H N N 446 TYR HB2 H N N 447 TYR HB3 H N N 448 TYR HD1 H N N 449 TYR HD2 H N N 450 TYR HE1 H N N 451 TYR HE2 H N N 452 TYR HH H N N 453 TYR HXT H N N 454 VAL N N N N 455 VAL CA C N S 456 VAL C C N N 457 VAL O O N N 458 VAL CB C N N 459 VAL CG1 C N N 460 VAL CG2 C N N 461 VAL OXT O N N 462 VAL H H N N 463 VAL H2 H N N 464 VAL HA H N N 465 VAL HB H N N 466 VAL HG11 H N N 467 VAL HG12 H N N 468 VAL HG13 H N N 469 VAL HG21 H N N 470 VAL HG22 H N N 471 VAL HG23 H N N 472 VAL HXT H N N 473 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 CYS N CA sing N N 76 CYS N H sing N N 77 CYS N H2 sing N N 78 CYS CA C sing N N 79 CYS CA CB sing N N 80 CYS CA HA sing N N 81 CYS C O doub N N 82 CYS C OXT sing N N 83 CYS CB SG sing N N 84 CYS CB HB2 sing N N 85 CYS CB HB3 sing N N 86 CYS SG HG sing N N 87 CYS OXT HXT sing N N 88 GLN N CA sing N N 89 GLN N H sing N N 90 GLN N H2 sing N N 91 GLN CA C sing N N 92 GLN CA CB sing N N 93 GLN CA HA sing N N 94 GLN C O doub N N 95 GLN C OXT sing N N 96 GLN CB CG sing N N 97 GLN CB HB2 sing N N 98 GLN CB HB3 sing N N 99 GLN CG CD sing N N 100 GLN CG HG2 sing N N 101 GLN CG HG3 sing N N 102 GLN CD OE1 doub N N 103 GLN CD NE2 sing N N 104 GLN NE2 HE21 sing N N 105 GLN NE2 HE22 sing N N 106 GLN OXT HXT sing N N 107 GLU N CA sing N N 108 GLU N H sing N N 109 GLU N H2 sing N N 110 GLU CA C sing N N 111 GLU CA CB sing N N 112 GLU CA HA sing N N 113 GLU C O doub N N 114 GLU C OXT sing N N 115 GLU CB CG sing N N 116 GLU CB HB2 sing N N 117 GLU CB HB3 sing N N 118 GLU CG CD sing N N 119 GLU CG HG2 sing N N 120 GLU CG HG3 sing N N 121 GLU CD OE1 doub N N 122 GLU CD OE2 sing N N 123 GLU OE2 HE2 sing N N 124 GLU OXT HXT sing N N 125 GLY N CA sing N N 126 GLY N H sing N N 127 GLY N H2 sing N N 128 GLY CA C sing N N 129 GLY CA HA2 sing N N 130 GLY CA HA3 sing N N 131 GLY C O doub N N 132 GLY C OXT sing N N 133 GLY OXT HXT sing N N 134 HIS N CA sing N N 135 HIS N H sing N N 136 HIS N H2 sing N N 137 HIS CA C sing N N 138 HIS CA CB sing N N 139 HIS CA HA sing N N 140 HIS C O doub N N 141 HIS C OXT sing N N 142 HIS CB CG sing N N 143 HIS CB HB2 sing N N 144 HIS CB HB3 sing N N 145 HIS CG ND1 sing Y N 146 HIS CG CD2 doub Y N 147 HIS ND1 CE1 doub Y N 148 HIS ND1 HD1 sing N N 149 HIS CD2 NE2 sing Y N 150 HIS CD2 HD2 sing N N 151 HIS CE1 NE2 sing Y N 152 HIS CE1 HE1 sing N N 153 HIS NE2 HE2 sing N N 154 HIS OXT HXT sing N N 155 ILE N CA sing N N 156 ILE N H sing N N 157 ILE N H2 sing N N 158 ILE CA C sing N N 159 ILE CA CB sing N N 160 ILE CA HA sing N N 161 ILE C O doub N N 162 ILE C OXT sing N N 163 ILE CB CG1 sing N N 164 ILE CB CG2 sing N N 165 ILE CB HB sing N N 166 ILE CG1 CD1 sing N N 167 ILE CG1 HG12 sing N N 168 ILE CG1 HG13 sing N N 169 ILE CG2 HG21 sing N N 170 ILE CG2 HG22 sing N N 171 ILE CG2 HG23 sing N N 172 ILE CD1 HD11 sing N N 173 ILE CD1 HD12 sing N N 174 ILE CD1 HD13 sing N N 175 ILE OXT HXT sing N N 176 LEU N CA sing N N 177 LEU N H sing N N 178 LEU N H2 sing N N 179 LEU CA C sing N N 180 LEU CA CB sing N N 181 LEU CA HA sing N N 182 LEU C O doub N N 183 LEU C OXT sing N N 184 LEU CB CG sing N N 185 LEU CB HB2 sing N N 186 LEU CB HB3 sing N N 187 LEU CG CD1 sing N N 188 LEU CG CD2 sing N N 189 LEU CG HG sing N N 190 LEU CD1 HD11 sing N N 191 LEU CD1 HD12 sing N N 192 LEU CD1 HD13 sing N N 193 LEU CD2 HD21 sing N N 194 LEU CD2 HD22 sing N N 195 LEU CD2 HD23 sing N N 196 LEU OXT HXT sing N N 197 LYS N CA sing N N 198 LYS N H sing N N 199 LYS N H2 sing N N 200 LYS CA C sing N N 201 LYS CA CB sing N N 202 LYS CA HA sing N N 203 LYS C O doub N N 204 LYS C OXT sing N N 205 LYS CB CG sing N N 206 LYS CB HB2 sing N N 207 LYS CB HB3 sing N N 208 LYS CG CD sing N N 209 LYS CG HG2 sing N N 210 LYS CG HG3 sing N N 211 LYS CD CE sing N N 212 LYS CD HD2 sing N N 213 LYS CD HD3 sing N N 214 LYS CE NZ sing N N 215 LYS CE HE2 sing N N 216 LYS CE HE3 sing N N 217 LYS NZ HZ1 sing N N 218 LYS NZ HZ2 sing N N 219 LYS NZ HZ3 sing N N 220 LYS OXT HXT sing N N 221 MET N CA sing N N 222 MET N H sing N N 223 MET N H2 sing N N 224 MET CA C sing N N 225 MET CA CB sing N N 226 MET CA HA sing N N 227 MET C O doub N N 228 MET C OXT sing N N 229 MET CB CG sing N N 230 MET CB HB2 sing N N 231 MET CB HB3 sing N N 232 MET CG SD sing N N 233 MET CG HG2 sing N N 234 MET CG HG3 sing N N 235 MET SD CE sing N N 236 MET CE HE1 sing N N 237 MET CE HE2 sing N N 238 MET CE HE3 sing N N 239 MET OXT HXT sing N N 240 NAG C1 C2 sing N N 241 NAG C1 O1 sing N N 242 NAG C1 O5 sing N N 243 NAG C1 H1 sing N N 244 NAG C2 C3 sing N N 245 NAG C2 N2 sing N N 246 NAG C2 H2 sing N N 247 NAG C3 C4 sing N N 248 NAG C3 O3 sing N N 249 NAG C3 H3 sing N N 250 NAG C4 C5 sing N N 251 NAG C4 O4 sing N N 252 NAG C4 H4 sing N N 253 NAG C5 C6 sing N N 254 NAG C5 O5 sing N N 255 NAG C5 H5 sing N N 256 NAG C6 O6 sing N N 257 NAG C6 H61 sing N N 258 NAG C6 H62 sing N N 259 NAG C7 C8 sing N N 260 NAG C7 N2 sing N N 261 NAG C7 O7 doub N N 262 NAG C8 H81 sing N N 263 NAG C8 H82 sing N N 264 NAG C8 H83 sing N N 265 NAG N2 HN2 sing N N 266 NAG O1 HO1 sing N N 267 NAG O3 HO3 sing N N 268 NAG O4 HO4 sing N N 269 NAG O6 HO6 sing N N 270 PHE N CA sing N N 271 PHE N H sing N N 272 PHE N H2 sing N N 273 PHE CA C sing N N 274 PHE CA CB sing N N 275 PHE CA HA sing N N 276 PHE C O doub N N 277 PHE C OXT sing N N 278 PHE CB CG sing N N 279 PHE CB HB2 sing N N 280 PHE CB HB3 sing N N 281 PHE CG CD1 doub Y N 282 PHE CG CD2 sing Y N 283 PHE CD1 CE1 sing Y N 284 PHE CD1 HD1 sing N N 285 PHE CD2 CE2 doub Y N 286 PHE CD2 HD2 sing N N 287 PHE CE1 CZ doub Y N 288 PHE CE1 HE1 sing N N 289 PHE CE2 CZ sing Y N 290 PHE CE2 HE2 sing N N 291 PHE CZ HZ sing N N 292 PHE OXT HXT sing N N 293 PRO N CA sing N N 294 PRO N CD sing N N 295 PRO N H sing N N 296 PRO CA C sing N N 297 PRO CA CB sing N N 298 PRO CA HA sing N N 299 PRO C O doub N N 300 PRO C OXT sing N N 301 PRO CB CG sing N N 302 PRO CB HB2 sing N N 303 PRO CB HB3 sing N N 304 PRO CG CD sing N N 305 PRO CG HG2 sing N N 306 PRO CG HG3 sing N N 307 PRO CD HD2 sing N N 308 PRO CD HD3 sing N N 309 PRO OXT HXT sing N N 310 RET C1 C2 sing N N 311 RET C1 C6 sing N N 312 RET C1 C16 sing N N 313 RET C1 C17 sing N N 314 RET C2 C3 sing N N 315 RET C2 H21 sing N N 316 RET C2 H22 sing N N 317 RET C3 C4 sing N N 318 RET C3 H31 sing N N 319 RET C3 H32 sing N N 320 RET C4 C5 sing N N 321 RET C4 H41 sing N N 322 RET C4 H42 sing N N 323 RET C5 C6 doub N N 324 RET C5 C18 sing N N 325 RET C6 C7 sing N N 326 RET C7 C8 doub N E 327 RET C7 H7 sing N N 328 RET C8 C9 sing N N 329 RET C8 H8 sing N N 330 RET C9 C10 doub N E 331 RET C9 C19 sing N N 332 RET C10 C11 sing N N 333 RET C10 H10 sing N N 334 RET C11 C12 doub N E 335 RET C11 H11 sing N N 336 RET C12 C13 sing N N 337 RET C12 H12 sing N N 338 RET C13 C14 doub N E 339 RET C13 C20 sing N N 340 RET C14 C15 sing N N 341 RET C14 H14 sing N N 342 RET C15 O1 doub N N 343 RET C15 H15 sing N N 344 RET C16 H161 sing N N 345 RET C16 H162 sing N N 346 RET C16 H163 sing N N 347 RET C17 H171 sing N N 348 RET C17 H172 sing N N 349 RET C17 H173 sing N N 350 RET C18 H181 sing N N 351 RET C18 H182 sing N N 352 RET C18 H183 sing N N 353 RET C19 H191 sing N N 354 RET C19 H192 sing N N 355 RET C19 H193 sing N N 356 RET C20 H201 sing N N 357 RET C20 H202 sing N N 358 RET C20 H203 sing N N 359 SER N CA sing N N 360 SER N H sing N N 361 SER N H2 sing N N 362 SER CA C sing N N 363 SER CA CB sing N N 364 SER CA HA sing N N 365 SER C O doub N N 366 SER C OXT sing N N 367 SER CB OG sing N N 368 SER CB HB2 sing N N 369 SER CB HB3 sing N N 370 SER OG HG sing N N 371 SER OXT HXT sing N N 372 THR N CA sing N N 373 THR N H sing N N 374 THR N H2 sing N N 375 THR CA C sing N N 376 THR CA CB sing N N 377 THR CA HA sing N N 378 THR C O doub N N 379 THR C OXT sing N N 380 THR CB OG1 sing N N 381 THR CB CG2 sing N N 382 THR CB HB sing N N 383 THR OG1 HG1 sing N N 384 THR CG2 HG21 sing N N 385 THR CG2 HG22 sing N N 386 THR CG2 HG23 sing N N 387 THR OXT HXT sing N N 388 TRP N CA sing N N 389 TRP N H sing N N 390 TRP N H2 sing N N 391 TRP CA C sing N N 392 TRP CA CB sing N N 393 TRP CA HA sing N N 394 TRP C O doub N N 395 TRP C OXT sing N N 396 TRP CB CG sing N N 397 TRP CB HB2 sing N N 398 TRP CB HB3 sing N N 399 TRP CG CD1 doub Y N 400 TRP CG CD2 sing Y N 401 TRP CD1 NE1 sing Y N 402 TRP CD1 HD1 sing N N 403 TRP CD2 CE2 doub Y N 404 TRP CD2 CE3 sing Y N 405 TRP NE1 CE2 sing Y N 406 TRP NE1 HE1 sing N N 407 TRP CE2 CZ2 sing Y N 408 TRP CE3 CZ3 doub Y N 409 TRP CE3 HE3 sing N N 410 TRP CZ2 CH2 doub Y N 411 TRP CZ2 HZ2 sing N N 412 TRP CZ3 CH2 sing Y N 413 TRP CZ3 HZ3 sing N N 414 TRP CH2 HH2 sing N N 415 TRP OXT HXT sing N N 416 TYR N CA sing N N 417 TYR N H sing N N 418 TYR N H2 sing N N 419 TYR CA C sing N N 420 TYR CA CB sing N N 421 TYR CA HA sing N N 422 TYR C O doub N N 423 TYR C OXT sing N N 424 TYR CB CG sing N N 425 TYR CB HB2 sing N N 426 TYR CB HB3 sing N N 427 TYR CG CD1 doub Y N 428 TYR CG CD2 sing Y N 429 TYR CD1 CE1 sing Y N 430 TYR CD1 HD1 sing N N 431 TYR CD2 CE2 doub Y N 432 TYR CD2 HD2 sing N N 433 TYR CE1 CZ doub Y N 434 TYR CE1 HE1 sing N N 435 TYR CE2 CZ sing Y N 436 TYR CE2 HE2 sing N N 437 TYR CZ OH sing N N 438 TYR OH HH sing N N 439 TYR OXT HXT sing N N 440 VAL N CA sing N N 441 VAL N H sing N N 442 VAL N H2 sing N N 443 VAL CA C sing N N 444 VAL CA CB sing N N 445 VAL CA HA sing N N 446 VAL C O doub N N 447 VAL C OXT sing N N 448 VAL CB CG1 sing N N 449 VAL CB CG2 sing N N 450 VAL CB HB sing N N 451 VAL CG1 HG11 sing N N 452 VAL CG1 HG12 sing N N 453 VAL CG1 HG13 sing N N 454 VAL CG2 HG21 sing N N 455 VAL CG2 HG22 sing N N 456 VAL CG2 HG23 sing N N 457 VAL OXT HXT sing N N 458 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 'ACETYL GROUP' ACE 4 RETINAL RET # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2J4Y _pdbx_initial_refinement_model.details 'The A chain of PDB entry 2J4Y, after suitable transformation into this space group.' # _pdbx_reflns_twin.type ? _pdbx_reflns_twin.operator -k,-h,-l _pdbx_reflns_twin.fraction 0.318 _pdbx_reflns_twin.domain_id ? _pdbx_reflns_twin.crystal_id 1 _pdbx_reflns_twin.diffrn_id 1 #