HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-FEB-08 3C9Q TITLE CRYSTAL STRUCTURE OF THE UNCHARACTERIZED HUMAN PROTEIN C8ORF32 WITH TITLE 2 BOUND PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN C8ORF32; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SYNTHETIC PEPTIDE; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C8ORF32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP16; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS MEDICALLY RELEVANT, PUTATIVE INVOLVEMENT IN HUMAN INHERITED ATAXIAS KEYWDS 2 AND DISORDERS OF PURKINJE CELL DEGENERATION, CANDIDATE GENE KEYWDS 3 IMPORTANT IN THE PATHOGENESIS OF T-CELL PROLYMPHOCYTIC LEUKEMIA, KEYWDS 4 GENE ASSOCIATED WITH CRE-PATHWAY ACTIVATION, PROTEIN STRUCTURE KEYWDS 5 INITIATIVE, PSI-2, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, KEYWDS 6 STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR E.BITTO,C.A.BINGMAN,J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 4 25-OCT-17 3C9Q 1 REMARK REVDAT 3 13-JUL-11 3C9Q 1 VERSN REVDAT 2 24-FEB-09 3C9Q 1 VERSN REVDAT 1 26-FEB-08 3C9Q 0 JRNL AUTH E.BITTO,C.A.BINGMAN,J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR. JRNL TITL CRYSTAL STRUCTURE OF THE UNCHARACTERIZED HUMAN PROTEIN JRNL TITL 2 C8ORF32 WITH BOUND PEPTIDE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.023 REMARK 3 FREE R VALUE TEST SET COUNT : 2049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01300 REMARK 3 B22 (A**2) : 0.12200 REMARK 3 B33 (A**2) : -0.13500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1741 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2370 ; 1.545 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 207 ; 6.586 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;25.494 ;23.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 267 ;13.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1351 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 780 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1168 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 202 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.266 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1048 ; 1.790 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1671 ; 2.640 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 800 ; 4.051 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 696 ; 5.689 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2868 30.5622 12.1676 REMARK 3 T TENSOR REMARK 3 T11: -0.0212 T22: -0.1351 REMARK 3 T33: -0.0736 T12: 0.0273 REMARK 3 T13: 0.0094 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 20.5725 L22: 2.5558 REMARK 3 L33: 5.6526 L12: 6.5442 REMARK 3 L13: 1.7606 L23: 2.1750 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.3435 S13: 0.3461 REMARK 3 S21: -0.0983 S22: 0.1448 S23: 0.1978 REMARK 3 S31: -0.6986 S32: -0.0753 S33: -0.1214 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1590 20.0261 7.3989 REMARK 3 T TENSOR REMARK 3 T11: -0.1198 T22: -0.1043 REMARK 3 T33: -0.1347 T12: 0.0103 REMARK 3 T13: 0.0002 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.6548 L22: 2.5536 REMARK 3 L33: 1.3443 L12: 1.2053 REMARK 3 L13: -0.1025 L23: 0.1986 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.0014 S13: 0.0814 REMARK 3 S21: -0.1093 S22: 0.0100 S23: 0.0269 REMARK 3 S31: -0.1554 S32: -0.0992 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0373 15.7944 19.5667 REMARK 3 T TENSOR REMARK 3 T11: -0.1584 T22: -0.1155 REMARK 3 T33: -0.1535 T12: 0.0148 REMARK 3 T13: -0.0327 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.0253 L22: 2.4283 REMARK 3 L33: 2.7045 L12: -0.1079 REMARK 3 L13: -0.6246 L23: 0.0882 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.0773 S13: -0.0859 REMARK 3 S21: -0.0939 S22: -0.0374 S23: -0.1577 REMARK 3 S31: 0.1121 S32: 0.0763 S33: 0.0701 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5354 18.1363 21.3008 REMARK 3 T TENSOR REMARK 3 T11: -0.1100 T22: -0.0838 REMARK 3 T33: -0.1140 T12: -0.0047 REMARK 3 T13: -0.0150 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.4354 L22: 1.2684 REMARK 3 L33: 1.9369 L12: 0.1269 REMARK 3 L13: -1.0564 L23: -0.7620 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: -0.1860 S13: 0.2077 REMARK 3 S21: 0.1494 S22: -0.1028 S23: 0.1259 REMARK 3 S31: -0.1213 S32: -0.1395 S33: 0.0115 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7916 18.7173 26.8157 REMARK 3 T TENSOR REMARK 3 T11: -0.1145 T22: -0.0917 REMARK 3 T33: -0.1129 T12: -0.0165 REMARK 3 T13: -0.0036 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.2250 L22: 3.5058 REMARK 3 L33: 1.5842 L12: -0.2146 REMARK 3 L13: -0.2573 L23: -1.8182 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.1155 S13: 0.0234 REMARK 3 S21: 0.3246 S22: -0.0198 S23: -0.0365 REMARK 3 S31: -0.1690 S32: 0.0060 S33: 0.0208 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0563 11.1520 11.2026 REMARK 3 T TENSOR REMARK 3 T11: -0.1383 T22: -0.1287 REMARK 3 T33: -0.1052 T12: 0.0294 REMARK 3 T13: 0.0034 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.1766 L22: 1.3954 REMARK 3 L33: 3.5439 L12: -0.0819 REMARK 3 L13: 0.3232 L23: 0.4714 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.0490 S13: -0.1253 REMARK 3 S21: -0.0468 S22: -0.0127 S23: -0.0625 REMARK 3 S31: 0.0455 S32: 0.0597 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1638 -0.6758 5.8466 REMARK 3 T TENSOR REMARK 3 T11: 0.0754 T22: -0.0087 REMARK 3 T33: 0.1563 T12: -0.0739 REMARK 3 T13: -0.0587 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 26.7925 L22: 22.0417 REMARK 3 L33: 12.8940 L12: -0.8510 REMARK 3 L13: -5.9702 L23: -4.4518 REMARK 3 S TENSOR REMARK 3 S11: 0.2108 S12: -0.3914 S13: -2.8190 REMARK 3 S21: -0.1007 S22: -0.3273 S23: 0.2097 REMARK 3 S31: 1.4231 S32: 0.0014 S33: 0.1165 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5751 8.9740 2.0155 REMARK 3 T TENSOR REMARK 3 T11: -0.0906 T22: -0.0558 REMARK 3 T33: -0.1084 T12: -0.0075 REMARK 3 T13: 0.0067 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 5.5782 L22: 0.7653 REMARK 3 L33: 1.0658 L12: -0.5029 REMARK 3 L13: 0.8470 L23: -0.0682 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: 0.1692 S13: -0.3683 REMARK 3 S21: -0.0873 S22: -0.0269 S23: -0.0347 REMARK 3 S31: 0.1452 S32: 0.1142 S33: 0.0205 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7129 11.6612 22.0650 REMARK 3 T TENSOR REMARK 3 T11: -0.0894 T22: -0.0407 REMARK 3 T33: -0.0620 T12: 0.0088 REMARK 3 T13: -0.0138 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.2319 L22: 0.7379 REMARK 3 L33: 4.7105 L12: 0.3163 REMARK 3 L13: 0.0699 L23: 1.7760 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: -0.1678 S13: -0.1034 REMARK 3 S21: 0.1742 S22: -0.0616 S23: -0.1026 REMARK 3 S31: 0.2466 S32: 0.3262 S33: 0.0203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.498 REMARK 200 RESOLUTION RANGE LOW (A) : 32.857 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0750 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.526 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, DM 5.0, PHENIX, SHELXL-97 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (10 MG/ML SE-MET REMARK 280 PROTEIN, 0.050 M SODIUM CHLORIDE, 0.003 M SODIUM AZIDE, 0.0003 M REMARK 280 TCEP, BIS-TRIS PH 7.0) MIXED IN A 1:1 RATIO WITH THE WELL REMARK 280 SOLUTION (1% ETHYLENE GLYCOL, 1.8 M AMMONIUM SULFATE, 0.10 M MES REMARK 280 PH 6.0). CRYOPROTECTED IN FOUR STAGES WITH WELL SOLUTION USING 0 REMARK 280 TO 25 % ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.16100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.01950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.16100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.01950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS THE MONOMERIC COMPLEX OF THE PROTEIN REMARK 300 C8ORF32 (CHAIN A) WITH BOUND PEPTIDE (CHAIN L) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 203 REMARK 465 ASN A 204 REMARK 465 CYS A 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 364 O HOH A 460 1.99 REMARK 500 O HOH A 383 O HOH A 384 2.01 REMARK 500 O HOH A 415 O HOH A 431 2.10 REMARK 500 O HOH A 309 O HOH A 394 2.12 REMARK 500 O HOH A 315 O HOH A 388 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 -168.77 -166.75 REMARK 500 ARG A 70 72.10 -150.01 REMARK 500 ASP A 73 51.51 -142.07 REMARK 500 LYS A 117 169.78 69.02 REMARK 500 MSE A 173 114.63 -163.89 REMARK 500 ASN A 174 23.13 -143.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 216 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.39772 RELATED DB: TARGETDB DBREF 3C9Q A 2 205 UNP Q96HA8 CH032_HUMAN 2 205 DBREF 3C9Q L 1 3 PDB 3C9Q 3C9Q 1 3 SEQADV 3C9Q SER A 1 UNP Q96HA8 EXPRESSION TAG SEQADV 3C9Q VAL A 32 UNP Q96HA8 ILE 32 VARIANT SEQADV 3C9Q SER A 93 UNP Q96HA8 ASN 93 VARIANT SEQADV 3C9Q ILE A 116 UNP Q96HA8 PHE 116 VARIANT SEQADV 3C9Q CYS A 134 UNP Q96HA8 ARG 134 VARIANT SEQRES 1 A 205 SER GLU GLY ASN GLY PRO ALA ALA VAL HIS TYR GLN PRO SEQRES 2 A 205 ALA SER PRO PRO ARG ASP ALA CYS VAL TYR SER SER CYS SEQRES 3 A 205 TYR CYS GLU GLU ASN VAL TRP LYS LEU CYS GLU TYR ILE SEQRES 4 A 205 LYS ASN HIS ASP GLN TYR PRO LEU GLU GLU CYS TYR ALA SEQRES 5 A 205 VAL PHE ILE SER ASN GLU ARG LYS MSE ILE PRO ILE TRP SEQRES 6 A 205 LYS GLN GLN ALA ARG PRO GLY ASP GLY PRO VAL ILE TRP SEQRES 7 A 205 ASP TYR HIS VAL VAL LEU LEU HIS VAL SER SER GLY GLY SEQRES 8 A 205 GLN SER PHE ILE TYR ASP LEU ASP THR VAL LEU PRO PHE SEQRES 9 A 205 PRO CYS LEU PHE ASP THR TYR VAL GLU ASP ALA ILE LYS SEQRES 10 A 205 SER ASP ASP ASP ILE HIS PRO GLN PHE ARG ARG LYS PHE SEQRES 11 A 205 ARG VAL ILE CYS ALA ASP SER TYR LEU LYS ASN PHE ALA SEQRES 12 A 205 SER ASP ARG SER HIS MSE LYS ASP SER SER GLY ASN TRP SEQRES 13 A 205 ARG GLU PRO PRO PRO PRO TYR PRO CYS ILE GLU THR GLY SEQRES 14 A 205 ASP SER LYS MSE ASN LEU ASN ASP PHE ILE SER MSE ASP SEQRES 15 A 205 PRO LYS VAL GLY TRP GLY ALA VAL TYR THR LEU SER GLU SEQRES 16 A 205 PHE THR HIS ARG PHE GLY SER LYS ASN CYS SEQRES 1 L 3 SER THR ALA MODRES 3C9Q MSE A 61 MET SELENOMETHIONINE MODRES 3C9Q MSE A 149 MET SELENOMETHIONINE MODRES 3C9Q MSE A 173 MET SELENOMETHIONINE MODRES 3C9Q MSE A 181 MET SELENOMETHIONINE HET MSE A 61 16 HET MSE A 149 8 HET MSE A 173 8 HET MSE A 181 8 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET SO4 A 209 5 HET SO4 A 210 5 HET CO3 A 211 4 HET EDO A 212 4 HET EDO A 213 4 HET EDO A 214 4 HET EDO A 215 4 HET EDO A 216 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CO3 CARBONATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 CO3 C O3 2- FORMUL 9 EDO 5(C2 H6 O2) FORMUL 14 HOH *272(H2 O) HELIX 1 1 PRO A 17 CYS A 21 5 5 HELIX 2 2 TYR A 27 HIS A 42 1 16 HELIX 3 3 PRO A 46 GLU A 48 5 3 HELIX 4 4 PHE A 108 ALA A 115 1 8 HELIX 5 5 HIS A 123 ARG A 127 5 5 HELIX 6 6 ALA A 135 PHE A 142 1 8 HELIX 7 7 ARG A 146 LYS A 150 5 5 HELIX 8 8 LEU A 175 SER A 180 1 6 HELIX 9 9 LEU A 193 GLY A 201 1 9 SHEET 1 A 6 CYS A 106 LEU A 107 0 SHEET 2 A 6 GLN A 92 TYR A 96 -1 N ILE A 95 O CYS A 106 SHEET 3 A 6 HIS A 81 SER A 88 -1 N LEU A 84 O TYR A 96 SHEET 4 A 6 CYS A 50 SER A 56 -1 N ILE A 55 O HIS A 81 SHEET 5 A 6 LYS A 129 CYS A 134 -1 O ARG A 131 N PHE A 54 SHEET 6 A 6 ALA A 189 THR A 192 -1 O ALA A 189 N VAL A 132 SHEET 1 B 2 ILE A 62 ILE A 64 0 SHEET 2 B 2 VAL A 76 TRP A 78 -1 O TRP A 78 N ILE A 62 LINK C LYS A 60 N AMSE A 61 1555 1555 1.33 LINK C LYS A 60 N BMSE A 61 1555 1555 1.33 LINK C AMSE A 61 N ILE A 62 1555 1555 1.33 LINK C BMSE A 61 N ILE A 62 1555 1555 1.32 LINK C HIS A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N LYS A 150 1555 1555 1.34 LINK C LYS A 172 N MSE A 173 1555 1555 1.34 LINK C MSE A 173 N ASN A 174 1555 1555 1.35 LINK C SER A 180 N MSE A 181 1555 1555 1.34 LINK C MSE A 181 N ASP A 182 1555 1555 1.33 CISPEP 1 GLY A 74 PRO A 75 0 3.12 CISPEP 2 PHE A 104 PRO A 105 0 1.76 CISPEP 3 SER A 153 GLY A 154 0 8.38 SITE 1 AC1 3 ARG A 18 PRO A 103 PHE A 104 SITE 1 AC2 5 LYS A 40 ARG A 146 TYR A 163 PRO A 164 SITE 2 AC2 5 CYS A 165 SITE 1 AC3 5 TRP A 65 LYS A 66 GLY A 72 ASP A 73 SITE 2 AC3 5 GLY A 74 SITE 1 AC4 2 LYS A 117 SER A 118 SITE 1 AC5 1 ARG A 127 SITE 1 AC6 2 TYR A 51 ARG A 199 SITE 1 AC7 3 LYS A 60 ASP A 79 ASN A 176 SITE 1 AC8 5 PRO A 16 CYS A 21 LYS A 34 TYR A 38 SITE 2 AC8 5 GLY A 169 SITE 1 AC9 3 TRP A 33 LYS A 34 PRO A 164 SITE 1 BC1 6 LYS A 40 ASN A 41 ARG A 146 TRP A 156 SITE 2 BC1 6 PRO A 160 CYS A 165 SITE 1 BC2 4 HIS A 10 TRP A 65 GLY A 74 LYS A 117 CRYST1 34.322 64.039 113.660 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029136 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008798 0.00000