HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-FEB-08 3CA8 TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI YDCF, AN S-ADENOSYL-L-METHIONINE TITLE 2 UTILIZING ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YDCF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YDCF, B1414, JW1411; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET100/D-TOPO KEYWDS TWO DOMAINS, ALPHA/BETA FOLD, HELIX BUNDLE, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURE 2 FUNCTION PROJECT, S2F, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.LIM,K.CHAO,C.LEHMANN,O.HERZBERG,STRUCTURE 2 FUNCTION PROJECT (S2F) REVDAT 6 03-APR-24 3CA8 1 REMARK REVDAT 5 21-FEB-24 3CA8 1 REMARK REVDAT 4 13-JUL-11 3CA8 1 VERSN REVDAT 3 24-FEB-09 3CA8 1 VERSN REVDAT 2 20-MAY-08 3CA8 1 JRNL REVDAT 1 06-MAY-08 3CA8 0 JRNL AUTH K.L.CHAO,K.LIM,C.LEHMANN,V.DOSEEVA,A.J.HOWARD,F.P.SCHWARZ, JRNL AUTH 2 O.HERZBERG JRNL TITL THE ESCHERICHIA COLI YDCF BINDS S-ADENOSYL-L-METHIONINE AND JRNL TITL 2 ADOPTS AN ALPHA/BETA-FOLD CHARACTERISTIC OF JRNL TITL 3 NUCLEOTIDE-UTILIZING ENZYMES. JRNL REF PROTEINS V. 72 506 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18393394 JRNL DOI 10.1002/PROT.22046 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 54139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4159 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4090 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 723 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.017 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.600 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROGRAM CNS HAS ALSO BEEN USED IN REMARK 3 REFINEMENT REMARK 4 REMARK 4 3CA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54189 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.22800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXD, SOLVE, RESOLVE REMARK 200 STARTING MODEL: STRUCTURE SOLVED BY MAD FROM THE DATA COLLECTED IN REMARK 200 R3 SPACE GROUP, THEN MOLECULAR REPLACEMENT USING THAT MODEL FOR REMARK 200 THE NATIVE SINGLE WAVELENGTH DATA COLLECTED IN P21 SPACE GROUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.7 M AMMONIUM SULFATE, 4 REMARK 280 % MPD, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.85500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 ARG A 266 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ILE B 3 REMARK 465 THR B 4 REMARK 465 SER B 264 REMARK 465 LEU B 265 REMARK 465 ARG B 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 68 O HOH A 1533 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 157 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 157 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 141 -91.80 -37.28 REMARK 500 ALA A 173 68.04 -163.87 REMARK 500 GLU B 142 88.90 -68.34 REMARK 500 ASP B 152 123.93 -33.94 REMARK 500 ALA B 173 68.86 -158.36 REMARK 500 TYR B 179 82.39 -152.94 REMARK 500 ALA B 190 72.59 35.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 140 VAL A 141 149.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 911 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 912 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 913 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 914 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YDCF RELATED DB: TARGETDB DBREF 3CA8 A 1 266 UNP P34209 YDCF_ECOLI 1 266 DBREF 3CA8 B 1 266 UNP P34209 YDCF_ECOLI 1 266 SEQRES 1 A 266 MET ASN ILE THR PRO PHE PRO THR LEU SER PRO ALA THR SEQRES 2 A 266 ILE ASP ALA ILE ASN VAL ILE GLY GLN TRP LEU ALA GLN SEQRES 3 A 266 ASP ASP PHE SER GLY GLU VAL PRO TYR GLN ALA ASP CYS SEQRES 4 A 266 VAL ILE LEU ALA GLY ASN ALA VAL MET PRO THR ILE ASP SEQRES 5 A 266 ALA ALA CYS LYS ILE ALA ARG ASP GLN GLN ILE PRO LEU SEQRES 6 A 266 LEU ILE SER GLY GLY ILE GLY HIS SER THR THR PHE LEU SEQRES 7 A 266 TYR SER ALA ILE ALA GLN HIS PRO HIS TYR ASN THR ILE SEQRES 8 A 266 ARG THR THR GLY ARG ALA GLU ALA THR ILE LEU ALA ASP SEQRES 9 A 266 ILE ALA HIS GLN PHE TRP HIS ILE PRO HIS GLU LYS ILE SEQRES 10 A 266 TRP ILE GLU ASP GLN SER THR ASN CYS GLY GLU ASN ALA SEQRES 11 A 266 ARG PHE SER ILE ALA LEU LEU ASN GLN ALA VAL GLU ARG SEQRES 12 A 266 VAL HIS THR ALA ILE VAL VAL GLN ASP PRO THR MET GLN SEQRES 13 A 266 ARG ARG THR MET ALA THR PHE ARG ARG MET THR GLY ASP SEQRES 14 A 266 ASN PRO ASP ALA PRO ARG TRP LEU SER TYR PRO GLY PHE SEQRES 15 A 266 VAL PRO GLN LEU GLY ASN ASN ALA ASP SER VAL ILE PHE SEQRES 16 A 266 ILE ASN GLN LEU GLN GLY LEU TRP PRO VAL GLU ARG TYR SEQRES 17 A 266 LEU SER LEU LEU THR GLY GLU LEU PRO ARG LEU ARG ASP SEQRES 18 A 266 ASP SER ASP GLY TYR GLY PRO ARG GLY ARG ASP PHE ILE SEQRES 19 A 266 VAL HIS VAL ASP PHE PRO ALA GLU VAL ILE HIS ALA TRP SEQRES 20 A 266 GLN THR LEU LYS HIS ASP ALA VAL LEU ILE GLU ALA MET SEQRES 21 A 266 GLU SER ARG SER LEU ARG SEQRES 1 B 266 MET ASN ILE THR PRO PHE PRO THR LEU SER PRO ALA THR SEQRES 2 B 266 ILE ASP ALA ILE ASN VAL ILE GLY GLN TRP LEU ALA GLN SEQRES 3 B 266 ASP ASP PHE SER GLY GLU VAL PRO TYR GLN ALA ASP CYS SEQRES 4 B 266 VAL ILE LEU ALA GLY ASN ALA VAL MET PRO THR ILE ASP SEQRES 5 B 266 ALA ALA CYS LYS ILE ALA ARG ASP GLN GLN ILE PRO LEU SEQRES 6 B 266 LEU ILE SER GLY GLY ILE GLY HIS SER THR THR PHE LEU SEQRES 7 B 266 TYR SER ALA ILE ALA GLN HIS PRO HIS TYR ASN THR ILE SEQRES 8 B 266 ARG THR THR GLY ARG ALA GLU ALA THR ILE LEU ALA ASP SEQRES 9 B 266 ILE ALA HIS GLN PHE TRP HIS ILE PRO HIS GLU LYS ILE SEQRES 10 B 266 TRP ILE GLU ASP GLN SER THR ASN CYS GLY GLU ASN ALA SEQRES 11 B 266 ARG PHE SER ILE ALA LEU LEU ASN GLN ALA VAL GLU ARG SEQRES 12 B 266 VAL HIS THR ALA ILE VAL VAL GLN ASP PRO THR MET GLN SEQRES 13 B 266 ARG ARG THR MET ALA THR PHE ARG ARG MET THR GLY ASP SEQRES 14 B 266 ASN PRO ASP ALA PRO ARG TRP LEU SER TYR PRO GLY PHE SEQRES 15 B 266 VAL PRO GLN LEU GLY ASN ASN ALA ASP SER VAL ILE PHE SEQRES 16 B 266 ILE ASN GLN LEU GLN GLY LEU TRP PRO VAL GLU ARG TYR SEQRES 17 B 266 LEU SER LEU LEU THR GLY GLU LEU PRO ARG LEU ARG ASP SEQRES 18 B 266 ASP SER ASP GLY TYR GLY PRO ARG GLY ARG ASP PHE ILE SEQRES 19 B 266 VAL HIS VAL ASP PHE PRO ALA GLU VAL ILE HIS ALA TRP SEQRES 20 B 266 GLN THR LEU LYS HIS ASP ALA VAL LEU ILE GLU ALA MET SEQRES 21 B 266 GLU SER ARG SER LEU ARG HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 A 805 5 HET SO4 A 807 5 HET MPD A 901 8 HET MPD A 902 8 HET MPD A 903 8 HET MPD A 907 8 HET MPD A 908 8 HET MPD A 909 8 HET MPD A 912 8 HET SO4 B 803 5 HET SO4 B 804 5 HET SO4 B 806 5 HET SO4 B 808 5 HET MPD B 904 8 HET MPD B 905 8 HET MPD B 906 8 HET MPD B 910 8 HET MPD B 911 8 HET MPD B 913 8 HET MPD B 914 8 HETNAM SO4 SULFATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 SO4 8(O4 S 2-) FORMUL 7 MPD 14(C6 H14 O2) FORMUL 25 HOH *723(H2 O) HELIX 1 1 SER A 10 GLN A 26 1 17 HELIX 2 2 VAL A 47 GLN A 62 1 16 HELIX 3 3 SER A 74 GLN A 84 1 11 HELIX 4 4 HIS A 87 ILE A 91 5 5 HELIX 5 5 ALA A 97 PHE A 109 1 13 HELIX 6 6 PRO A 113 GLU A 115 5 3 HELIX 7 7 ASN A 125 GLN A 139 1 15 HELIX 8 8 MET A 155 GLY A 168 1 14 HELIX 9 9 PRO A 204 ARG A 220 1 17 HELIX 10 10 PRO A 240 HIS A 252 1 13 HELIX 11 11 ASP A 253 ARG A 263 1 11 HELIX 12 12 SER B 10 GLN B 26 1 17 HELIX 13 13 VAL B 47 GLN B 62 1 16 HELIX 14 14 SER B 74 GLN B 84 1 11 HELIX 15 15 HIS B 87 ILE B 91 5 5 HELIX 16 16 ALA B 97 PHE B 109 1 13 HELIX 17 17 PRO B 113 GLU B 115 5 3 HELIX 18 18 ASN B 125 GLN B 139 1 15 HELIX 19 19 ASP B 152 THR B 154 5 3 HELIX 20 20 MET B 155 GLY B 168 1 14 HELIX 21 21 PRO B 204 ARG B 220 1 17 HELIX 22 22 PRO B 240 HIS B 252 1 13 HELIX 23 23 ASP B 253 SER B 262 1 10 SHEET 1 A 5 ILE A 117 GLU A 120 0 SHEET 2 A 5 LEU A 65 SER A 68 1 N ILE A 67 O GLU A 120 SHEET 3 A 5 CYS A 39 ALA A 43 1 N VAL A 40 O LEU A 66 SHEET 4 A 5 ALA A 147 VAL A 150 1 O ILE A 148 N ILE A 41 SHEET 5 A 5 TRP A 176 SER A 178 1 O LEU A 177 N VAL A 149 SHEET 1 B 2 LEU A 186 ASN A 189 0 SHEET 2 B 2 SER A 192 PHE A 195 -1 O SER A 192 N ASN A 189 SHEET 1 C 5 ILE B 117 GLU B 120 0 SHEET 2 C 5 LEU B 65 SER B 68 1 N LEU B 65 O TRP B 118 SHEET 3 C 5 CYS B 39 ALA B 43 1 N VAL B 40 O LEU B 66 SHEET 4 C 5 ALA B 147 VAL B 150 1 O ILE B 148 N ILE B 41 SHEET 5 C 5 TRP B 176 SER B 178 1 O LEU B 177 N VAL B 149 SHEET 1 D 2 LEU B 186 ASN B 189 0 SHEET 2 D 2 SER B 192 PHE B 195 -1 O SER B 192 N ASN B 189 SITE 1 AC1 3 ARG A 92 ARG A 96 HOH A1457 SITE 1 AC2 8 HIS A 73 ASN A 125 CYS A 126 ARG A 158 SITE 2 AC2 8 HOH A1025 HOH A1256 HOH A1267 HOH A1572 SITE 1 AC3 4 ARG B 96 THR B 100 HOH B1085 HOH B1482 SITE 1 AC4 6 HIS B 73 ASN B 125 CYS B 126 ARG B 158 SITE 2 AC4 6 HOH B1402 HOH B1514 SITE 1 AC5 4 ARG A 220 LYS A 251 HOH A1661 HOH A1672 SITE 1 AC6 5 ARG B 220 LYS B 251 HOH B1416 HOH B1481 SITE 2 AC6 5 HOH B1626 SITE 1 AC7 4 ASP A 222 SER A 223 ARG A 229 HOH A1455 SITE 1 AC8 3 ASP B 222 SER B 223 ARG B 229 SITE 1 AC9 6 PRO A 49 ASP A 52 GLY A 181 HOH A1017 SITE 2 AC9 6 HOH A1105 HOH A1249 SITE 1 BC1 6 PHE A 77 SER A 80 TRP A 203 PRO A 204 SITE 2 BC1 6 HOH A1002 HOH A1515 SITE 1 BC2 6 ARG A 131 ILE A 134 MET A 166 HOH A1656 SITE 2 BC2 6 HOH B1004 HOH B1214 SITE 1 BC3 6 PRO B 49 ASP B 52 ALA B 53 GLY B 181 SITE 2 BC3 6 HOH B1053 HOH B1095 SITE 1 BC4 7 ALA B 46 PHE B 77 SER B 80 GLN B 84 SITE 2 BC4 7 TRP B 203 PRO B 204 HOH B1007 SITE 1 BC5 5 HOH A1010 HOH A1523 ARG B 131 MET B 166 SITE 2 BC5 5 HOH B1385 SITE 1 BC6 8 HOH A1106 HOH A1419 HOH A1512 ASN B 125 SITE 2 BC6 8 GLY B 127 GLU B 128 MET B 166 HOH B1509 SITE 1 BC7 5 HIS A 87 TYR A 88 PHE A 109 TRP A 110 SITE 2 BC7 5 HOH A1490 SITE 1 BC8 4 LEU A 137 VAL A 144 HIS A 145 ARG A 175 SITE 1 BC9 6 PRO B 34 TYR B 35 ALA B 83 HOH B1045 SITE 2 BC9 6 HOH B1181 HOH B1545 SITE 1 CC1 8 GLN B 36 ALA B 37 ASP B 38 THR B 94 SITE 2 CC1 8 THR B 146 HOH B1119 HOH B1178 HOH B1333 SITE 1 CC2 7 PHE A 132 ALA A 135 LEU B 136 GLN B 139 SITE 2 CC2 7 HOH B1143 HOH B1546 HOH B1557 SITE 1 CC3 4 TYR B 88 PHE B 109 TRP B 110 HOH B1562 SITE 1 CC4 5 GLN B 108 PHE B 109 HOH B1039 HOH B1120 SITE 2 CC4 5 HOH B1582 CRYST1 64.795 39.710 122.645 90.00 96.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015433 0.000000 0.001715 0.00000 SCALE2 0.000000 0.025183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008204 0.00000