HEADER HYDROLASE 19-FEB-08 3CA9 TITLE EVOLUTION OF CHLORELLA VIRUS DUTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.1.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAMECIUM BURSARIA CHLORELLA VIRUS IL3A; SOURCE 3 ORGANISM_COMMON: PBCV-IL3A; SOURCE 4 ORGANISM_TAXID: 46019; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3-PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-23A KEYWDS DUTPASE CHLORELLA VIRUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.YAMANISHI,K.HOMMA,Y.ZHANG,L.V.J.ETTEN,H.MORIYAMA REVDAT 3 21-FEB-24 3CA9 1 REMARK SEQADV REVDAT 2 17-NOV-09 3CA9 1 JRNL REVDAT 1 03-MAR-09 3CA9 0 JRNL AUTH K.HOMMA,H.MORIYAMA JRNL TITL CRYSTALLIZATION AND CRYSTAL-PACKING STUDIES OF CHLORELLA JRNL TITL 2 VIRUS DEOXYURIDINE TRIPHOSPHATASE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 1030 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 19851015 JRNL DOI 10.1107/S1744309109034459 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3073620.460 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.700 REMARK 3 FREE R VALUE TEST SET COUNT : 865 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1176 REMARK 3 BIN R VALUE (WORKING SET) : 0.3950 REMARK 3 BIN FREE R VALUE : 0.4640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.080 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.500 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 26.99 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3CA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8200 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG1450, 5MM MAGNESIUM CHLORIDE, REMARK 280 50MM SODIUM PHOSPHATE, 50MM SODIUM CHLORIDE, 1% GLYCEROL, 2MM REMARK 280 DUDP, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.82350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.82350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.82350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.82350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.82350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.82350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 52.82350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 52.82350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 52.82350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 52.82350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 52.82350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 52.82350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 52.82350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 52.82350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 52.82350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 52.82350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 52.82350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 52.82350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 52.82350 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 52.82350 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -52.82350 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 52.82350 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 998 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 999 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 999 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 ALA A -14 REMARK 465 SER A -13 REMARK 465 MET A -12 REMARK 465 THR A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 GLN A -8 REMARK 465 GLN A -7 REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 LEU A 126 REMARK 465 SER A 127 REMARK 465 ASP A 128 REMARK 465 THR A 129 REMARK 465 ALA A 130 REMARK 465 ARG A 131 REMARK 465 GLY A 132 REMARK 465 SER A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 PHE A 136 REMARK 465 GLY A 137 REMARK 465 SER A 138 REMARK 465 THR A 139 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 LEU A 142 REMARK 465 GLU A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 SER B -13 REMARK 465 MET B -12 REMARK 465 THR B -11 REMARK 465 GLY B -10 REMARK 465 GLY B -9 REMARK 465 GLN B -8 REMARK 465 GLN B -7 REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLU B -1 REMARK 465 LEU B 126 REMARK 465 SER B 127 REMARK 465 ASP B 128 REMARK 465 THR B 129 REMARK 465 ALA B 130 REMARK 465 ARG B 131 REMARK 465 GLY B 132 REMARK 465 SER B 133 REMARK 465 GLY B 134 REMARK 465 GLY B 135 REMARK 465 PHE B 136 REMARK 465 GLY B 137 REMARK 465 SER B 138 REMARK 465 THR B 139 REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 LEU B 142 REMARK 465 GLU B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 37 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A -1 -52.64 79.67 REMARK 500 PHE A 0 43.10 171.02 REMARK 500 MET A 39 15.98 57.38 REMARK 500 ILE A 42 148.51 -175.77 REMARK 500 ALA A 76 -113.67 51.50 REMARK 500 ASP A 98 163.49 -48.33 REMARK 500 ALA A 108 -174.82 -174.81 REMARK 500 PRO A 118 -166.78 -69.07 REMARK 500 LEU A 124 -96.16 -66.62 REMARK 500 MET B 1 -38.06 135.74 REMARK 500 SER B 2 -147.87 -89.07 REMARK 500 SER B 3 177.94 99.98 REMARK 500 PRO B 16 102.55 -43.04 REMARK 500 VAL B 31 52.91 -104.48 REMARK 500 GLU B 32 155.06 172.75 REMARK 500 PRO B 53 150.47 -49.90 REMARK 500 ALA B 76 -127.47 54.55 REMARK 500 ASP B 82 32.30 -83.33 REMARK 500 ALA B 108 -167.72 -172.02 REMARK 500 THR B 117 72.01 -113.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD A 777 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD B 778 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C2T RELATED DB: PDB REMARK 900 WILD TYPE WITHOUT TAG REMARK 900 RELATED ID: 3C3I RELATED DB: PDB REMARK 900 MU-22 MUTANT WITHOUT TAG DBREF 3CA9 A 1 141 UNP Q5I3E5 Q5I3E5_PBCVI 1 141 DBREF 3CA9 B 1 141 UNP Q5I3E5 Q5I3E5_PBCVI 1 141 SEQADV 3CA9 MET A -15 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 ALA A -14 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 SER A -13 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 MET A -12 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 THR A -11 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLY A -10 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLY A -9 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLN A -8 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLN A -7 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 MET A -6 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLY A -5 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 ARG A -4 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLY A -3 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 SER A -2 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLU A -1 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 PHE A 0 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 LEU A 142 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLU A 143 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS A 144 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS A 145 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS A 146 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS A 147 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS A 148 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS A 149 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 MET B -15 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 ALA B -14 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 SER B -13 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 MET B -12 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 THR B -11 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLY B -10 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLY B -9 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLN B -8 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLN B -7 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 MET B -6 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLY B -5 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 ARG B -4 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLY B -3 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 SER B -2 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLU B -1 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 PHE B 0 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 LEU B 142 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 GLU B 143 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS B 144 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS B 145 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS B 146 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS B 147 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS B 148 UNP Q5I3E5 EXPRESSION TAG SEQADV 3CA9 HIS B 149 UNP Q5I3E5 EXPRESSION TAG SEQRES 1 A 165 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 165 SER GLU PHE MET SER SER LEU LEU VAL LYS LYS LEU VAL SEQRES 3 A 165 GLU SER ALA THR THR PRO MET ARG GLY SER GLU GLY ALA SEQRES 4 A 165 ALA GLY TYR ASP ILE SER SER VAL GLU ASP VAL VAL VAL SEQRES 5 A 165 PRO ALA MET GLY ARG ILE ALA VAL SER THR GLY ILE SER SEQRES 6 A 165 ILE ARG VAL PRO ASP GLY THR TYR GLY ARG ILE ALA PRO SEQRES 7 A 165 ARG SER GLY LEU ALA TYR LYS TYR GLY ILE ASP VAL LEU SEQRES 8 A 165 ALA GLY VAL ILE ASP GLU ASP TYR THR GLY GLU VAL LYS SEQRES 9 A 165 VAL ILE LEU TYR ASN THR THR GLU ARG ASP TYR ILE ILE SEQRES 10 A 165 LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE LEU GLU GLN SEQRES 11 A 165 ILE VAL THR PRO GLY VAL ALA VAL VAL LEU ASP LEU SER SEQRES 12 A 165 ASP THR ALA ARG GLY SER GLY GLY PHE GLY SER THR GLY SEQRES 13 A 165 ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 165 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 B 165 SER GLU PHE MET SER SER LEU LEU VAL LYS LYS LEU VAL SEQRES 3 B 165 GLU SER ALA THR THR PRO MET ARG GLY SER GLU GLY ALA SEQRES 4 B 165 ALA GLY TYR ASP ILE SER SER VAL GLU ASP VAL VAL VAL SEQRES 5 B 165 PRO ALA MET GLY ARG ILE ALA VAL SER THR GLY ILE SER SEQRES 6 B 165 ILE ARG VAL PRO ASP GLY THR TYR GLY ARG ILE ALA PRO SEQRES 7 B 165 ARG SER GLY LEU ALA TYR LYS TYR GLY ILE ASP VAL LEU SEQRES 8 B 165 ALA GLY VAL ILE ASP GLU ASP TYR THR GLY GLU VAL LYS SEQRES 9 B 165 VAL ILE LEU TYR ASN THR THR GLU ARG ASP TYR ILE ILE SEQRES 10 B 165 LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE LEU GLU GLN SEQRES 11 B 165 ILE VAL THR PRO GLY VAL ALA VAL VAL LEU ASP LEU SER SEQRES 12 B 165 ASP THR ALA ARG GLY SER GLY GLY PHE GLY SER THR GLY SEQRES 13 B 165 ILE LEU GLU HIS HIS HIS HIS HIS HIS HET MG A 998 1 HET DUD A 777 24 HET MG B 999 1 HET DUD B 778 24 HETNAM MG MAGNESIUM ION HETNAM DUD DEOXYURIDINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 DUD 2(C9 H14 N2 O11 P2) FORMUL 7 HOH *19(H2 O) HELIX 1 1 ARG A 63 GLY A 71 1 9 HELIX 2 2 ARG B 63 GLY B 71 1 9 SHEET 1 A 2 LEU A 5 LYS A 8 0 SHEET 2 A 2 ILE A 48 ARG A 51 -1 O ARG A 51 N LEU A 5 SHEET 1 B 4 TYR A 26 SER A 29 0 SHEET 2 B 4 ARG A 106 GLN A 114 -1 O LEU A 110 N TYR A 26 SHEET 3 B 4 THR A 56 ALA A 61 -1 N ALA A 61 O GLN A 109 SHEET 4 B 4 VAL A 78 ILE A 79 -1 O ILE A 79 N GLY A 58 SHEET 1 C 2 VAL A 34 VAL A 36 0 SHEET 2 C 2 TYR A 99 ILE A 101 -1 O TYR A 99 N VAL A 36 SHEET 1 D 3 ARG A 41 SER A 45 0 SHEET 2 D 3 LYS A 88 ASN A 93 -1 O VAL A 89 N VAL A 44 SHEET 3 D 3 ILE A 72 VAL A 74 -1 N ASP A 73 O TYR A 92 SHEET 1 E 2 LEU B 5 LYS B 8 0 SHEET 2 E 2 ILE B 48 ARG B 51 -1 O SER B 49 N LYS B 7 SHEET 1 F 4 TYR B 26 SER B 29 0 SHEET 2 F 4 ARG B 106 GLN B 114 -1 O LEU B 110 N TYR B 26 SHEET 3 F 4 THR B 56 ALA B 61 -1 N ARG B 59 O ILE B 111 SHEET 4 F 4 VAL B 78 ILE B 79 -1 O ILE B 79 N GLY B 58 SHEET 1 G 2 VAL B 34 VAL B 36 0 SHEET 2 G 2 TYR B 99 ILE B 101 -1 O ILE B 101 N VAL B 34 SHEET 1 H 3 ARG B 41 SER B 45 0 SHEET 2 H 3 LYS B 88 ASN B 93 -1 O VAL B 89 N VAL B 44 SHEET 3 H 3 ILE B 72 VAL B 74 -1 N ASP B 73 O TYR B 92 SITE 1 AC1 1 ASP A 73 SITE 1 AC2 10 ARG A 63 SER A 64 GLY A 65 ALA A 76 SITE 2 AC2 10 GLY A 77 ILE A 79 ASP A 80 TYR A 83 SITE 3 AC2 10 GLU A 86 LYS A 88 SITE 1 AC3 9 ARG B 63 SER B 64 GLY B 65 ALA B 76 SITE 2 AC3 9 GLY B 77 ILE B 79 ASP B 80 TYR B 83 SITE 3 AC3 9 LYS B 88 CRYST1 105.647 105.647 105.647 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009465 0.00000