HEADER TRANSFERASE 19-FEB-08 3CAF TITLE CRYSTAL STRUCTURE OF HFGFR2 D2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG-LIKE C2-TYPE 2; COMPND 5 SYNONYM: FGFR-2, KERATINOCYTE GROWTH FACTOR RECEPTOR 2, CD332 COMPND 6 ANTIGEN; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FGFR2, BEK, KGFR, KSAM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FGFR2, D2, FIBROBLAST GROWTH FACTOR, ATP-BINDING, DISEASE MUTATION, KEYWDS 2 ECTODERMAL DYSPLASIA, GLYCOPROTEIN, HEPARIN-BINDING, IMMUNOGLOBULIN KEYWDS 3 DOMAIN, KINASE, LACRIMO-AURICULO-DENTO-DIGITAL SYNDROME, MEMBRANE, KEYWDS 4 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, RECEPTOR, SECRETED, TRANSFERASE, KEYWDS 5 TRANSMEMBRANE, TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR F.GUO,R.DAKSHINAMURTHY,K.M.KATHIR,S.K.K.THALLAPURANAM,J.SAKON REVDAT 3 30-OCT-24 3CAF 1 REMARK REVDAT 2 13-JUL-11 3CAF 1 VERSN REVDAT 1 27-JAN-09 3CAF 0 JRNL AUTH F.GUO,R.DAKSHINAMURTHY,K.M.KATHIR,S.K.K.THALLAPURANAM, JRNL AUTH 2 J.SAKON JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF THE HFGFR2 D2 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 8479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 169 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 25.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 6 REMARK 3 BIN FREE R VALUE : 0.4460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.770 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 838 ; 0.032 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1134 ; 2.082 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 99 ; 2.654 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 41 ;26.958 ;23.415 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 145 ;11.785 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 8.509 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 115 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 644 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 338 ; 0.269 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 555 ; 0.331 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 52 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 515 ;24.764 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 807 ;23.374 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 381 ; NULL ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 327 ;87.486 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2000 -5.9670 12.5850 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: -0.0259 REMARK 3 T33: 0.1165 T12: 0.0022 REMARK 3 T13: -0.0457 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 24.1225 L22: 52.8457 REMARK 3 L33: 9.4146 L12: 17.0004 REMARK 3 L13: 5.7085 L23: 5.4481 REMARK 3 S TENSOR REMARK 3 S11: 0.5463 S12: -0.8995 S13: -1.2297 REMARK 3 S21: 1.6243 S22: 0.0639 S23: -1.3500 REMARK 3 S31: 1.3493 S32: 0.2244 S33: -0.6102 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8930 7.1700 17.9480 REMARK 3 T TENSOR REMARK 3 T11: 0.3859 T22: 0.2168 REMARK 3 T33: 0.0608 T12: -0.1245 REMARK 3 T13: -0.0061 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 39.2963 L22: 19.5315 REMARK 3 L33: 4.5531 L12: 0.3962 REMARK 3 L13: -1.4182 L23: -9.3904 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: -3.6624 S13: 0.7664 REMARK 3 S21: 2.6566 S22: -0.4747 S23: -0.4251 REMARK 3 S31: -0.9062 S32: 0.4995 S33: 0.3496 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7620 14.9960 16.4470 REMARK 3 T TENSOR REMARK 3 T11: 0.5482 T22: 0.1349 REMARK 3 T33: 0.1733 T12: -0.0790 REMARK 3 T13: 0.1078 T23: -0.0817 REMARK 3 L TENSOR REMARK 3 L11: 32.2457 L22: 86.6898 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.9710 S12: -2.5009 S13: -0.5137 REMARK 3 S21: 3.3823 S22: 1.6259 S23: 0.9132 REMARK 3 S31: -1.9795 S32: -0.4485 S33: -0.6549 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1330 27.1360 11.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.1166 T22: 0.0990 REMARK 3 T33: 0.2068 T12: -0.0701 REMARK 3 T13: 0.0061 T23: -0.1890 REMARK 3 L TENSOR REMARK 3 L11: 16.0395 L22: 3.1162 REMARK 3 L33: 6.7012 L12: -1.5331 REMARK 3 L13: -8.8378 L23: -1.4874 REMARK 3 S TENSOR REMARK 3 S11: 1.1358 S12: -1.0918 S13: 0.3949 REMARK 3 S21: 0.9271 S22: -0.4074 S23: -0.3371 REMARK 3 S31: -0.4373 S32: -0.0197 S33: -0.7285 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6690 17.9990 12.7640 REMARK 3 T TENSOR REMARK 3 T11: 0.0700 T22: 0.1648 REMARK 3 T33: -0.1324 T12: -0.0132 REMARK 3 T13: -0.0113 T23: -0.0976 REMARK 3 L TENSOR REMARK 3 L11: 32.1352 L22: 59.5039 REMARK 3 L33: 0.3690 L12: 31.7047 REMARK 3 L13: -2.4550 L23: -0.1592 REMARK 3 S TENSOR REMARK 3 S11: 1.1663 S12: -2.6007 S13: -1.0441 REMARK 3 S21: 2.6263 S22: -1.1568 S23: -1.7466 REMARK 3 S31: -0.1444 S32: 0.4731 S33: -0.0096 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1280 0.4350 10.2370 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.0292 REMARK 3 T33: 0.1802 T12: -0.0078 REMARK 3 T13: -0.1263 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 0.0003 L22: 7.6968 REMARK 3 L33: 2.6345 L12: 0.0479 REMARK 3 L13: 0.0280 L23: 4.5030 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: -0.5181 S13: -0.7677 REMARK 3 S21: 1.0911 S22: -0.2290 S23: -2.0155 REMARK 3 S31: -0.2037 S32: 0.3909 S33: 0.1593 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2920 12.2490 1.7480 REMARK 3 T TENSOR REMARK 3 T11: -0.1435 T22: -0.1830 REMARK 3 T33: -0.2358 T12: -0.0454 REMARK 3 T13: -0.0236 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 22.7035 L22: 21.2986 REMARK 3 L33: 19.9769 L12: -7.4508 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: 0.4999 S13: -1.1964 REMARK 3 S21: -1.1527 S22: -0.5154 S23: -0.4975 REMARK 3 S31: 0.3630 S32: 0.3631 S33: 0.5237 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4700 15.0820 -2.8760 REMARK 3 T TENSOR REMARK 3 T11: -0.1516 T22: -0.0425 REMARK 3 T33: -0.1655 T12: -0.0115 REMARK 3 T13: 0.0050 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 61.7832 L22: 24.5742 REMARK 3 L33: 13.0605 L12: 7.9214 REMARK 3 L13: 8.1771 L23: 4.5756 REMARK 3 S TENSOR REMARK 3 S11: 0.3749 S12: 2.5646 S13: -1.6802 REMARK 3 S21: -0.5272 S22: 0.1192 S23: -0.2536 REMARK 3 S31: 0.2252 S32: 0.9415 S33: -0.4941 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5700 19.5610 -2.4670 REMARK 3 T TENSOR REMARK 3 T11: -0.1450 T22: 0.0299 REMARK 3 T33: 0.1382 T12: -0.0483 REMARK 3 T13: 0.0441 T23: -0.0538 REMARK 3 L TENSOR REMARK 3 L11: 15.7015 L22: 26.4986 REMARK 3 L33: 19.0498 L12: 3.3712 REMARK 3 L13: -3.1946 L23: 7.4532 REMARK 3 S TENSOR REMARK 3 S11: -0.3305 S12: 1.5601 S13: -0.3196 REMARK 3 S21: -1.0276 S22: 0.6638 S23: -0.3899 REMARK 3 S31: 0.3202 S32: -0.3711 S33: -0.3333 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0870 14.6360 6.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.0211 REMARK 3 T33: 0.2841 T12: -0.0807 REMARK 3 T13: -0.0539 T23: -0.1084 REMARK 3 L TENSOR REMARK 3 L11: 13.6918 L22: 59.7734 REMARK 3 L33: 34.2849 L12: 3.9409 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.5614 S12: -0.2768 S13: -0.9314 REMARK 3 S21: 3.2053 S22: -2.3878 S23: -3.5828 REMARK 3 S31: -1.2510 S32: 2.6397 S33: 1.8264 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6300 6.8080 12.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.3060 REMARK 3 T33: 0.3857 T12: -0.0208 REMARK 3 T13: -0.1308 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 29.6461 L22: 39.1544 REMARK 3 L33: 20.5093 L12: 3.4503 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.5915 S12: -1.4585 S13: -0.5559 REMARK 3 S21: 0.3094 S22: 0.6650 S23: -5.6206 REMARK 3 S31: -0.3786 S32: 2.4446 S33: -0.0736 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7680 23.1690 6.0960 REMARK 3 T TENSOR REMARK 3 T11: -0.0976 T22: -0.0672 REMARK 3 T33: 0.1752 T12: -0.0246 REMARK 3 T13: -0.0127 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 2.0123 L22: 10.2495 REMARK 3 L33: 9.6174 L12: 0.9790 REMARK 3 L13: 0.5656 L23: -9.2434 REMARK 3 S TENSOR REMARK 3 S11: 0.2013 S12: -0.1359 S13: 0.6206 REMARK 3 S21: 0.1423 S22: -0.2909 S23: -0.8052 REMARK 3 S31: 0.1787 S32: 0.2629 S33: 0.0897 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0740 16.9240 3.7680 REMARK 3 T TENSOR REMARK 3 T11: -0.2107 T22: -0.1411 REMARK 3 T33: -0.1714 T12: -0.0226 REMARK 3 T13: 0.0138 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 12.1366 L22: 3.6490 REMARK 3 L33: 8.2933 L12: 1.0988 REMARK 3 L13: 0.3466 L23: -0.3575 REMARK 3 S TENSOR REMARK 3 S11: -0.1362 S12: -0.1021 S13: 1.1547 REMARK 3 S21: 0.1644 S22: 0.0612 S23: 0.0018 REMARK 3 S31: -0.1562 S32: 0.0066 S33: 0.0751 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 233 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0320 -3.8120 4.8210 REMARK 3 T TENSOR REMARK 3 T11: -0.2315 T22: -0.1434 REMARK 3 T33: -0.0291 T12: 0.0540 REMARK 3 T13: -0.0769 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 17.1732 L22: 79.6545 REMARK 3 L33: 19.6268 L12: 12.3414 REMARK 3 L13: 2.7647 L23: 15.7516 REMARK 3 S TENSOR REMARK 3 S11: 0.4040 S12: 0.1301 S13: -0.9522 REMARK 3 S21: -0.9213 S22: -0.0364 S23: -0.2065 REMARK 3 S31: 0.3837 S32: 0.2838 S33: -0.3675 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5980 6.9100 6.8180 REMARK 3 T TENSOR REMARK 3 T11: -0.1567 T22: -0.1510 REMARK 3 T33: 0.0059 T12: -0.0518 REMARK 3 T13: 0.0312 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 6.4306 L22: 32.3671 REMARK 3 L33: 0.0000 L12: 1.0479 REMARK 3 L13: -4.5581 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.2251 S12: -0.3117 S13: -0.5480 REMARK 3 S21: -0.0416 S22: -0.3910 S23: 1.0258 REMARK 3 S31: -0.2816 S32: -0.0164 S33: 0.1660 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3930 24.3590 8.1790 REMARK 3 T TENSOR REMARK 3 T11: -0.0857 T22: -0.0695 REMARK 3 T33: 0.0273 T12: -0.0248 REMARK 3 T13: 0.1104 T23: -0.1083 REMARK 3 L TENSOR REMARK 3 L11: 16.1526 L22: 19.1841 REMARK 3 L33: 8.8031 L12: 9.7132 REMARK 3 L13: -1.7891 L23: -9.6548 REMARK 3 S TENSOR REMARK 3 S11: 0.5350 S12: -0.3559 S13: 1.5846 REMARK 3 S21: 0.9890 S22: -0.4554 S23: 2.2534 REMARK 3 S31: -0.5878 S32: 0.1411 S33: -0.0797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.2SSI, CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9401 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 16.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.390 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.22 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V) PEG3350, 0.1M (NH3)2SO4, REMARK 280 100MM HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.25000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 26 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 163 O HOH A 14 2.02 REMARK 500 CD1 TYR A 237 O HOH A 36 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 207 CZ TYR A 207 OH -0.144 REMARK 500 TYR A 207 CZ TYR A 207 CE2 -0.103 REMARK 500 TYR A 229 CZ TYR A 229 CE2 0.081 REMARK 500 TYR A 244 CD1 TYR A 244 CE1 0.108 REMARK 500 VAL A 248 CB VAL A 248 CG2 0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 172 -9.46 78.56 REMARK 500 SER A 220 70.62 43.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 3CAF A 150 249 UNP P21802 FGFR2_HUMAN 150 249 SEQRES 1 A 100 ASN LYS ARG ALA PRO TYR TRP THR ASN THR GLU LYS MET SEQRES 2 A 100 GLU LYS ARG LEU HIS ALA VAL PRO ALA ALA ASN THR VAL SEQRES 3 A 100 LYS PHE ARG CYS PRO ALA GLY GLY ASN PRO MET PRO THR SEQRES 4 A 100 MET ARG TRP LEU LYS ASN GLY LYS GLU PHE LYS GLN GLU SEQRES 5 A 100 HIS ARG ILE GLY GLY TYR LYS VAL ARG ASN GLN HIS TRP SEQRES 6 A 100 SER LEU ILE MET GLU SER VAL VAL PRO SER ASP LYS GLY SEQRES 7 A 100 ASN TYR THR CYS VAL VAL GLU ASN GLU TYR GLY SER ILE SEQRES 8 A 100 ASN HIS THR TYR HIS LEU ASP VAL VAL FORMUL 2 HOH *54(H2 O) HELIX 1 1 LYS A 199 ARG A 203 5 5 HELIX 2 2 ASN A 211 HIS A 213 5 3 HELIX 3 3 VAL A 222 LYS A 226 5 5 SHEET 1 A 2 ARG A 152 TRP A 156 0 SHEET 2 A 2 ALA A 181 ASN A 184 -1 O ASN A 184 N ARG A 152 SHEET 1 B 5 LEU A 166 PRO A 170 0 SHEET 2 B 5 GLY A 238 VAL A 249 1 O ASP A 247 N VAL A 169 SHEET 3 B 5 GLY A 227 ASN A 235 -1 N GLY A 227 O LEU A 246 SHEET 4 B 5 THR A 188 LYS A 193 -1 N ARG A 190 O VAL A 232 SHEET 5 B 5 LYS A 196 GLU A 197 -1 O LYS A 196 N LYS A 193 SHEET 1 C 3 VAL A 175 ARG A 178 0 SHEET 2 C 3 SER A 215 MET A 218 -1 O LEU A 216 N PHE A 177 SHEET 3 C 3 LYS A 208 ARG A 210 -1 N LYS A 208 O ILE A 217 SSBOND 1 CYS A 179 CYS A 231 1555 1555 2.01 CISPEP 1 ASN A 184 PRO A 185 0 1.82 CRYST1 42.500 79.900 37.290 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023529 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026817 0.00000