HEADER ELECTRON TRANSPORT 17-NOV-98 3CAR TITLE REDUCED STRUCTURE OF THE ACIDIC CYTOCHROME C3 FROM DESULFOVIBRIO TITLE 2 AFRICANUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C3; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO AFRICANUS; SOURCE 3 ORGANISM_TAXID: 873; SOURCE 4 STRAIN: BENGHAZI; SOURCE 5 CELLULAR_LOCATION: PERIPLASM KEYWDS CYTOCHROME C3, TETRAHEME, REDUCED FORM, ELECTRON TRANSPORT, KEYWDS 2 DESULFOVIBRIO AFRICANUS EXPDTA X-RAY DIFFRACTION AUTHOR S.NORAGER,P.LEGRAND,L.PIEULLE,C.HATCHIKIAN,M.ROTH REVDAT 6 03-APR-24 3CAR 1 REMARK LINK REVDAT 5 11-APR-18 3CAR 1 REMARK REVDAT 4 04-APR-18 3CAR 1 REMARK REVDAT 3 13-JUL-11 3CAR 1 VERSN REVDAT 2 24-FEB-09 3CAR 1 VERSN REVDAT 1 23-JUL-00 3CAR 0 JRNL AUTH S.NORAGER,P.LEGRAND,L.PIEULLE,C.HATCHIKIAN,M.ROTH JRNL TITL CRYSTAL STRUCTURE OF THE OXIDISED AND REDUCED ACIDIC JRNL TITL 2 CYTOCHROME C3FROM DESULFOVIBRIO AFRICANUS. JRNL REF J.MOL.BIOL. V. 290 881 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10398589 JRNL DOI 10.1006/JMBI.1999.2917 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.C.NORAGER REMARK 1 TITL CRYSTALLOGRAPHIC STUDIES OF THE TWO TETRAHEME CYTOCHROMES C3 REMARK 1 TITL 2 FROM DESULFOVIBRIO AFRICANUS REMARK 1 REF THESIS, UNIVERSITE JOSEPH 1998 REMARK 1 REF 2 FOURIER REMARK 1 PUBL GRENOBLE, FRANCE : UNIVERSITE JOSEPH FOURIER (THESIS) REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH V.MAGRO,L.PIEULLE,N.FORGET,B.GUIGLIARELLI,Y.PETILLOT, REMARK 1 AUTH 2 E.C.HATCHIKIAN REMARK 1 TITL FURTHER CHARACTERIZATION OF THE TWO TETRAHEME CYTOCHROMES C3 REMARK 1 TITL 2 FROM DESULFOVIBRIO AFRICANUS: NUCLEOTIDE SEQUENCES, EPR REMARK 1 TITL 3 SPECTROSCOPY AND BIOLOGICAL ACTIVITY REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1342 149 1997 REMARK 1 REFN ISSN 0006-3002 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.PIEULLE,J.HALADJIAN,J.BONICEL,E.C.HATCHIKIAN REMARK 1 TITL BIOCHEMICAL STUDIES OF THE C-TYPE CYTOCHROMES OF THE SULFATE REMARK 1 TITL 2 REDUCER DESULFOVIBRIO AFRICANUS. CHARACTERIZATION OF TWO REMARK 1 TITL 3 TETRAHEME CYTOCHROMES C3 WITH DIFFERENT SPECIFICITY REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1273 51 1996 REMARK 1 REFN ISSN 0006-3002 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 16485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 179 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.014 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.030 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.033 ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.035 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESIDUES WITH AN OCCUPANCY LOWER THAN 1.0, ARE REFINED WITH REMARK 3 THE GIVEN OCCUPANCY. THIS OCCUPANCY HAS BEEN ESTABLISHED REMARK 3 MANUALLY TO AVOID POSITIVE OR NEGATIVE PEAKS IN THE REMARK 3 FOBS-FCALC DENSITY MAPS. REMARK 4 REMARK 4 3CAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 108.2 REMARK 200 PH : 5.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0057 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : THOMSON/PRINCETON JNSJR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17501 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 32.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: OXIDISED FORM OF THE SAME PROTEIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.82850 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 53.82850 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 53.82850 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 53.82850 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 53.82850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 53.82850 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 53.82850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 53.82850 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 53.82850 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 53.82850 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 53.82850 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 53.82850 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 53.82850 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 53.82850 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 53.82850 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 53.82850 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 53.82850 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 53.82850 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 53.82850 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 53.82850 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 53.82850 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 53.82850 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 53.82850 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 53.82850 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 53.82850 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 53.82850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -920.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 215.31400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 107.65700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 215.31400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 107.65700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 AS ARS A 110 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CGN A 1 CA - C - N ANGL. DEV. = -16.3 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 TYR A 78 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 22 90.99 -169.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 10 -10.70 REMARK 500 PHE A 12 11.54 REMARK 500 LEU A 15 -10.51 REMARK 500 GLU A 16 10.61 REMARK 500 GLU A 34 -13.44 REMARK 500 SER A 35 -13.62 REMARK 500 GLU A 52 -11.76 REMARK 500 PRO A 58 -11.96 REMARK 500 ASP A 61 10.27 REMARK 500 GLY A 69 -12.24 REMARK 500 PRO A 93 -10.74 REMARK 500 MET A 95 -12.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 113 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE2 REMARK 620 2 GLU A 87 OE1 109.9 REMARK 620 3 GLU A 87 OE2 89.6 52.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 111 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 6 NE2 REMARK 620 2 ASP A 70 OD2 105.6 REMARK 620 3 HEM A 105 O1D 90.7 85.3 REMARK 620 4 HEM A 105 O2D 108.6 127.6 56.3 REMARK 620 5 HOH A 121 O 110.6 112.7 145.7 90.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 112 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE2 REMARK 620 2 ASP A 53 OD2 96.6 REMARK 620 3 HOH A 233 O 69.7 94.7 REMARK 620 4 HOH A 263 O 55.5 117.2 117.6 REMARK 620 5 HOH A 272 O 155.9 103.9 95.8 122.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 104 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 24 NE2 REMARK 620 2 HEM A 104 NA 87.6 REMARK 620 3 HEM A 104 NB 90.1 92.3 REMARK 620 4 HEM A 104 NC 91.1 178.4 88.8 REMARK 620 5 HEM A 104 ND 90.2 87.3 179.5 91.7 REMARK 620 6 HIS A 40 NE2 176.9 94.5 92.2 86.8 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 114 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 26 OE1 REMARK 620 2 GLU A 26 OE2 52.4 REMARK 620 3 GLU A 29 OE1 78.8 127.7 REMARK 620 4 GLU A 29 OE2 129.8 173.2 52.1 REMARK 620 5 GLU A 29 OE2 102.7 109.1 97.6 77.2 REMARK 620 6 HOH A 171 O 80.4 71.8 84.2 101.8 176.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 106 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HEM A 106 NA 92.2 REMARK 620 3 HEM A 106 NB 88.8 91.6 REMARK 620 4 HEM A 106 NC 89.0 178.7 88.7 REMARK 620 5 HEM A 106 ND 90.3 91.8 176.6 87.9 REMARK 620 6 HIS A 86 NE2 178.3 88.3 89.5 90.5 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 105 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 HEM A 105 NA 91.7 REMARK 620 3 HEM A 105 NB 90.5 90.1 REMARK 620 4 HEM A 105 NC 93.4 174.5 92.0 REMARK 620 5 HEM A 105 ND 93.2 91.6 175.9 85.9 REMARK 620 6 HIS A 63 NE2 175.7 84.8 87.0 90.2 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 107 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HEM A 107 NA 89.8 REMARK 620 3 HEM A 107 NB 90.4 91.1 REMARK 620 4 HEM A 107 NC 91.2 178.3 87.5 REMARK 620 5 HEM A 107 ND 85.4 87.8 175.7 93.6 REMARK 620 6 HIS A 100 NE2 176.2 89.7 93.4 89.4 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ARS A 108 AS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ZN A 114 ZN REMARK 620 2 ZN A 114 ZN 58.4 REMARK 620 3 HOH A 171 O 57.1 111.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ARS A 110 AS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ZN A 113 ZN REMARK 620 2 ZN A 113 ZN 177.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARS A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARS A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARS A 110 DBREF 3CAR A 2 103 UNP P94690 CYC3A_DESAF 26 127 SEQRES 1 A 103 CGN GLU ASP MET THR HIS VAL PRO THR ASP ALA PHE GLY SEQRES 2 A 103 LYS LEU GLU ARG PRO ALA ALA VAL PHE ASN HIS ASP GLU SEQRES 3 A 103 HIS ASN GLU LYS ALA GLY ILE GLU SER CYS ASN ALA CYS SEQRES 4 A 103 HIS HIS VAL TRP VAL ASN GLY VAL LEU ALA GLU ASP GLU SEQRES 5 A 103 ASP SER VAL GLY THR PRO CYS SER ASP CYS HIS ALA LEU SEQRES 6 A 103 GLU GLN ASP GLY ASP THR PRO GLY LEU GLN ASP ALA TYR SEQRES 7 A 103 HIS GLN GLN CYS TRP GLY CYS HIS GLU LYS GLN ALA LYS SEQRES 8 A 103 GLY PRO VAL MET CYS GLY GLU CYS HIS VAL LYS ASN HET CGN A 1 8 HET ZN A 111 1 HET ZN A 112 1 HET ZN A 113 1 HET ZN A 114 1 HET HEM A 104 43 HET HEM A 105 43 HET HEM A 106 43 HET HEM A 107 43 HET ARS A 108 1 HET ARS A 109 1 HET ARS A 110 1 HETNAM CGN 5-OXO-PYRROLIDINE-2-CARBALDEHYDE HETNAM ZN ZINC ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ARS ARSENIC HETSYN HEM HEME FORMUL 1 CGN C5 H7 N O2 FORMUL 2 ZN 4(ZN 2+) FORMUL 6 HEM 4(C34 H32 FE N4 O4) FORMUL 10 ARS 3(AS) FORMUL 13 HOH *159(H2 O) HELIX 1 1 ASP A 10 PHE A 12 5 3 HELIX 2 2 HIS A 24 ALA A 31 1 8 HELIX 3 3 CYS A 36 ALA A 38 5 3 HELIX 4 4 CYS A 59 CYS A 62 1 4 HELIX 5 5 LEU A 74 GLN A 89 1 16 HELIX 6 6 CYS A 96 CYS A 99 1 4 SHEET 1 A 2 TRP A 43 VAL A 44 0 SHEET 2 A 2 VAL A 47 LEU A 48 -1 O VAL A 47 N VAL A 44 LINK C CGN A 1 N GLU A 2 1555 1555 1.35 LINK SG CYS A 36 CAB HEM A 104 1555 1555 1.82 LINK SG CYS A 39 CAC HEM A 104 1555 1555 1.81 LINK SG CYS A 59 CAB HEM A 105 1555 1555 1.79 LINK SG CYS A 62 CAC HEM A 105 1555 1555 1.82 LINK SG CYS A 82 CAB HEM A 106 1555 1555 1.80 LINK SG CYS A 85 CAC HEM A 106 1555 1555 1.85 LINK SG CYS A 96 CAB HEM A 107 1555 1555 1.83 LINK SG CYS A 99 CAC HEM A 107 1555 1555 1.83 LINK OE2 GLU A 2 ZN ZN A 113 21554 1555 2.54 LINK NE2 HIS A 6 ZN ZN A 111 1555 1555 1.99 LINK OE2 GLU A 16 ZN ZN A 112 17544 1555 2.77 LINK NE2 HIS A 24 FE HEM A 104 1555 1555 2.04 LINK OE1 GLU A 26 ZN ZN A 114 4565 1555 2.37 LINK OE2 GLU A 26 ZN ZN A 114 4565 1555 2.61 LINK NE2 HIS A 27 FE HEM A 106 1555 1555 2.19 LINK OE1 GLU A 29 ZN ZN A 114 1555 1555 2.19 LINK OE2 GLU A 29 ZN ZN A 114 1555 1555 2.73 LINK OE2 GLU A 29 ZN ZN A 114 4565 1555 2.35 LINK NE2 HIS A 40 FE HEM A 104 1555 1555 2.04 LINK NE2 HIS A 41 FE HEM A 105 1555 1555 2.00 LINK OD2 ASP A 53 ZN ZN A 112 1555 1555 2.26 LINK NE2 HIS A 63 FE HEM A 105 1555 1555 2.06 LINK OD2 ASP A 70 ZN ZN A 111 18565 1555 2.11 LINK NE2 HIS A 79 FE HEM A 107 1555 1555 2.01 LINK NE2 HIS A 86 FE HEM A 106 1555 1555 2.04 LINK OE1 GLU A 87 ZN ZN A 113 1555 1555 2.41 LINK OE2 GLU A 87 ZN ZN A 113 1555 1555 2.70 LINK NE2 HIS A 100 FE HEM A 107 1555 1555 2.03 LINK O1D HEM A 105 ZN ZN A 111 18565 1555 2.55 LINK O2D HEM A 105 ZN ZN A 111 18565 1555 2.25 LINK AS ARS A 108 ZN ZN A 114 1555 1555 2.84 LINK AS ARS A 108 ZN ZN A 114 1555 4565 3.06 LINK AS ARS A 108 O HOH A 171 1555 4565 2.49 LINK AS ARS A 110 ZN ZN A 113 1555 1555 3.06 LINK AS ARS A 110 ZN ZN A 113 1555 2765 3.06 LINK ZN ZN A 111 O HOH A 121 1555 1555 2.09 LINK ZN ZN A 112 O HOH A 233 1555 17544 2.55 LINK ZN ZN A 112 O HOH A 263 1555 17544 2.37 LINK ZN ZN A 112 O HOH A 272 1555 17544 2.59 LINK ZN ZN A 114 O HOH A 171 1555 4565 2.57 SITE 1 AC1 4 HIS A 6 ASP A 70 HEM A 105 HOH A 121 SITE 1 AC2 5 GLU A 16 ASP A 53 HOH A 233 HOH A 263 SITE 2 AC2 5 HOH A 272 SITE 1 AC3 4 GLU A 2 GLU A 87 ARS A 109 ARS A 110 SITE 1 AC4 4 GLU A 26 GLU A 29 ARS A 108 HOH A 171 SITE 1 AC5 15 CGN A 1 MET A 4 PRO A 8 HIS A 24 SITE 2 AC5 15 ASN A 28 ILE A 33 CYS A 36 CYS A 39 SITE 3 AC5 15 HIS A 40 VAL A 55 PRO A 58 CYS A 59 SITE 4 AC5 15 TYR A 78 HOH A 193 HOH A 208 SITE 1 AC6 21 HIS A 6 CYS A 39 HIS A 41 TRP A 43 SITE 2 AC6 21 THR A 57 CYS A 59 CYS A 62 HIS A 63 SITE 3 AC6 21 ASP A 70 THR A 71 PRO A 72 ALA A 77 SITE 4 AC6 21 GLN A 80 GLN A 81 ASN A 103 ZN A 111 SITE 5 AC6 21 HOH A 121 HOH A 160 HOH A 163 HOH A 164 SITE 6 AC6 21 HOH A 201 SITE 1 AC7 12 VAL A 21 PHE A 22 HIS A 27 ALA A 31 SITE 2 AC7 12 GLN A 81 CYS A 82 CYS A 85 HIS A 86 SITE 3 AC7 12 GLN A 89 PRO A 93 HOH A 229 HOH A 268 SITE 1 AC8 17 VAL A 7 THR A 9 PHE A 12 LEU A 15 SITE 2 AC8 17 GLU A 16 ARG A 17 ALA A 19 ALA A 20 SITE 3 AC8 17 GLN A 75 TYR A 78 HIS A 79 TRP A 83 SITE 4 AC8 17 CYS A 96 CYS A 99 HIS A 100 HOH A 116 SITE 5 AC8 17 HOH A 179 SITE 1 AC9 3 GLU A 26 ZN A 114 HOH A 171 SITE 1 BC1 2 GLU A 87 ZN A 113 SITE 1 BC2 2 GLU A 87 ZN A 113 CRYST1 107.657 107.657 107.657 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009289 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009289 0.00000 HETATM 1 CB CGN A 1 81.622 51.868 11.138 1.00 24.09 C HETATM 2 CG CGN A 1 81.778 50.426 10.291 1.00 23.58 C HETATM 3 CD CGN A 1 79.987 50.647 10.275 1.00 27.36 C HETATM 4 N CGN A 1 79.509 51.516 10.509 1.00 28.14 N HETATM 5 OE1 CGN A 1 79.760 49.163 9.837 1.00 34.62 O HETATM 6 C CGN A 1 80.899 53.677 9.742 1.00 27.03 C HETATM 7 CA CGN A 1 80.373 53.054 10.624 1.00 29.30 C HETATM 8 O CGN A 1 81.530 54.628 9.640 1.00 27.34 O