HEADER TRANSFERASE 21-FEB-08 3CBF
TITLE CRYSTAL STRUCTURE OF LYSN, ALPHA-AMINOADIPATE AMINOTRANSFERASE, FROM
TITLE 2 THERMUS THERMOPHILUS HB27
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALPHA-AMINODIPATE AMINOTRANSFERASE;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 2.6.1.39;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;
SOURCE 3 ORGANISM_TAXID: 274;
SOURCE 4 STRAIN: HB27;
SOURCE 5 GENE: LYSN;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODON-PLUS(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-LYSN7
KEYWDS ALPHA-AMINOADIPATE AMINOTRANSFERASE, THERMUS THERMOPHILUS, SUBSTRATE
KEYWDS 2 SPECIFITY, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR T.TOMITA,T.MIYAZAKI,T.MIYAGAWA,S.FUSHINOBU,T.KUZUYAMA,M.NISHIYAMA
REVDAT 2 01-NOV-23 3CBF 1 REMARK
REVDAT 1 13-JAN-09 3CBF 0
JRNL AUTH T.TOMITA,T.MIYAGAWA,T.MIYAZAKI,S.FUSHINOBU,T.KUZUYAMA,
JRNL AUTH 2 M.NISHIYAMA
JRNL TITL MECHANISM FOR MULTIPLE-SUBSTRATES RECOGNITION OF
JRNL TITL 2 ALPHA-AMINOADIPATE AMINOTRANSFERASE FROM THERMUS
JRNL TITL 3 THERMOPHILUS
JRNL REF PROTEINS 2008
JRNL REFN ESSN 1097-0134
JRNL PMID 18831049
JRNL DOI 10.1002/PROT.22245
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH T.MIYAZAKI,J.MIYAZAKI,H.YAMANE,M.NISHIYAMA
REMARK 1 TITL ALPHA-AMINOADIPATE AMINOTRANSFERASE FROM AN EXTREME
REMARK 1 TITL 2 THERMOPHILIC BACTERIUM, THERMUS THERMOPHILUS
REMARK 1 REF MICROBIOLOGY (READING, V. 150 2327 2004
REMARK 1 REF 2 ENGL.)
REMARK 1 REFN ISSN 1350-0872
REMARK 1 PMID 15256574
REMARK 1 DOI 10.1099/MIC.0.27037-0
REMARK 2
REMARK 2 RESOLUTION. 1.67 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0019
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELYHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.69
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8
REMARK 3 NUMBER OF REFLECTIONS : 83725
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.204
REMARK 3 R VALUE (WORKING SET) : 0.202
REMARK 3 FREE R VALUE : 0.247
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 4415
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71
REMARK 3 REFLECTION IN BIN (WORKING SET) : 5766
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.91
REMARK 3 BIN R VALUE (WORKING SET) : 0.3010
REMARK 3 BIN FREE R VALUE SET COUNT : 299
REMARK 3 BIN FREE R VALUE : 0.3750
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 6110
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 52
REMARK 3 SOLVENT ATOMS : 431
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.77
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.01000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.118
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.448
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6350 ; 0.013 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8598 ; 1.491 ; 2.007
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 800 ; 5.641 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 279 ;36.507 ;22.437
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1093 ;16.109 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;19.835 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 928 ; 0.098 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4856 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3353 ; 0.205 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4342 ; 0.308 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 428 ; 0.172 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.246 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.158 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4051 ; 0.854 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6281 ; 1.359 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2584 ; 2.212 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2308 ; 3.529 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3CBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-08.
REMARK 100 THE DEPOSITION ID IS D_1000046573.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 09-FEB-08
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.3
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PHOTON FACTORY
REMARK 200 BEAMLINE : BL-6A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.978
REMARK 200 MONOCHROMATOR : SI 111 CHANNEL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91233
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 6.600
REMARK 200 R MERGE (I) : 0.06600
REMARK 200 R SYM (I) : 0.06600
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 6.60
REMARK 200 R MERGE FOR SHELL (I) : 0.55600
REMARK 200 R SYM FOR SHELL (I) : 0.55600
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 2Z1Y
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.45
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.2M POTASSIUM FLUORIDE,
REMARK 280 PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.63950
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.44000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.62150
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.44000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.63950
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.62150
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 26960 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 LYS A 2
REMARK 465 PRO A 3
REMARK 465 LEU A 4
REMARK 465 VAL A 397
REMARK 465 MET B 1
REMARK 465 LYS B 2
REMARK 465 PRO B 3
REMARK 465 LEU B 4
REMARK 465 VAL B 397
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD2 ASP B 105 O HOH B 773 1.61
REMARK 500 O HOH B 639 O HOH B 791 1.95
REMARK 500 O HOH B 584 O HOH B 789 1.96
REMARK 500 NH2 ARG B 223 O HOH B 788 2.18
REMARK 500 NH1 ARG B 133 O HOH B 639 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES
REMARK 500 LEU A 367 CA - CB - CG ANGL. DEV. = 15.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 38 -108.84 -94.53
REMARK 500 PHE A 172 62.56 65.15
REMARK 500 ASP A 203 42.89 -108.81
REMARK 500 LEU A 208 36.04 -96.27
REMARK 500 LEU A 240 -71.75 -143.76
REMARK 500 ARG A 245 60.24 62.73
REMARK 500 ASP A 267 10.46 -157.13
REMARK 500 LEU A 268 -69.51 68.22
REMARK 500 PRO A 332 106.86 -58.75
REMARK 500 LYS A 333 108.03 -23.57
REMARK 500 ALA B 38 -110.12 -96.19
REMARK 500 PHE B 172 62.26 66.96
REMARK 500 LEU B 208 37.16 -94.57
REMARK 500 LEU B 240 -66.64 -138.63
REMARK 500 ARG B 245 70.77 47.93
REMARK 500 ASP B 267 11.38 -157.49
REMARK 500 LEU B 268 -70.77 68.42
REMARK 500 LYS B 333 109.68 -55.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N5F A 500
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N5F B 501
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2DTV RELATED DB: PDB
REMARK 900 LEUCINE AND PYRIDOXAL 5'-PHOSPHATE COMPLEXED FORM OF THE SAME
REMARK 900 PROTEIN.
REMARK 900 RELATED ID: 2EGY RELATED DB: PDB
REMARK 900 PYRIDOXAL 5'-PHOSPHATE COMPLEXED FORM OF THE SAME PROTEIN.
REMARK 900 RELATED ID: 2Z1Y RELATED DB: PDB
REMARK 900 N-(5'-PHOSPHOPYRIDOXYL)-L-LEUCINE COMPLEXED FORM OF THE SAME
REMARK 900 PROTEIN.
DBREF 3CBF A 1 397 UNP Q72LL6 Q72LL6_THET2 1 397
DBREF 3CBF B 1 397 UNP Q72LL6 Q72LL6_THET2 1 397
SEQRES 1 A 397 MET LYS PRO LEU SER TRP SER GLU ALA PHE GLY LYS GLY
SEQRES 2 A 397 ALA GLY ARG ILE GLN ALA SER THR ILE ARG GLU LEU LEU
SEQRES 3 A 397 LYS LEU THR GLN ARG PRO GLY ILE LEU SER PHE ALA GLY
SEQRES 4 A 397 GLY LEU PRO ALA PRO GLU LEU PHE PRO LYS GLU GLU ALA
SEQRES 5 A 397 ALA GLU ALA ALA ALA ARG ILE LEU ARG GLU LYS GLY GLU
SEQRES 6 A 397 VAL ALA LEU GLN TYR SER PRO THR GLU GLY TYR ALA PRO
SEQRES 7 A 397 LEU ARG ALA PHE VAL ALA GLU TRP ILE GLY VAL ARG PRO
SEQRES 8 A 397 GLU GLU VAL LEU ILE THR THR GLY SER GLN GLN ALA LEU
SEQRES 9 A 397 ASP LEU VAL GLY LYS VAL PHE LEU ASP GLU GLY SER PRO
SEQRES 10 A 397 VAL LEU LEU GLU ALA PRO SER TYR MET GLY ALA ILE GLN
SEQRES 11 A 397 ALA PHE ARG LEU GLN GLY PRO ARG PHE LEU THR VAL PRO
SEQRES 12 A 397 ALA GLY GLU GLU GLY PRO ASP LEU ASP ALA LEU GLU GLU
SEQRES 13 A 397 VAL LEU LYS ARG GLU ARG PRO ARG PHE LEU TYR LEU ILE
SEQRES 14 A 397 PRO SER PHE GLN ASN PRO THR GLY GLY LEU THR PRO LEU
SEQRES 15 A 397 PRO ALA ARG LYS ARG LEU LEU GLN MET VAL MET GLU ARG
SEQRES 16 A 397 GLY LEU VAL VAL VAL GLU ASP ASP ALA TYR ARG GLU LEU
SEQRES 17 A 397 TYR PHE GLY GLU ALA ARG LEU PRO SER LEU PHE GLU LEU
SEQRES 18 A 397 ALA ARG GLU ALA GLY TYR PRO GLY VAL ILE TYR LEU GLY
SEQRES 19 A 397 SER PHE SER LYS VAL LEU SER PRO GLY LEU ARG VAL ALA
SEQRES 20 A 397 PHE ALA VAL ALA HIS PRO GLU ALA LEU GLN LYS LEU VAL
SEQRES 21 A 397 GLN ALA LYS GLN GLY ALA ASP LEU HIS THR PRO MET LEU
SEQRES 22 A 397 ASN GLN MET LEU VAL HIS GLU LEU LEU LYS GLU GLY PHE
SEQRES 23 A 397 SER GLU ARG LEU GLU ARG VAL ARG ARG VAL TYR ARG GLU
SEQRES 24 A 397 LYS ALA GLN ALA MET LEU HIS ALA LEU ASP ARG GLU VAL
SEQRES 25 A 397 PRO LYS GLU VAL ARG TYR THR ARG PRO LYS GLY GLY MET
SEQRES 26 A 397 PHE VAL TRP MET GLU LEU PRO LYS GLY LEU SER ALA GLU
SEQRES 27 A 397 GLY LEU PHE ARG ARG ALA LEU GLU GLU ASN VAL ALA PHE
SEQRES 28 A 397 VAL PRO GLY GLY PRO PHE PHE ALA ASN GLY GLY GLY GLU
SEQRES 29 A 397 ASN THR LEU ARG LEU SER TYR ALA THR LEU ASP ARG GLU
SEQRES 30 A 397 GLY ILE ALA GLU GLY VAL ARG ARG LEU GLY ARG ALA LEU
SEQRES 31 A 397 LYS GLY LEU LEU ALA LEU VAL
SEQRES 1 B 397 MET LYS PRO LEU SER TRP SER GLU ALA PHE GLY LYS GLY
SEQRES 2 B 397 ALA GLY ARG ILE GLN ALA SER THR ILE ARG GLU LEU LEU
SEQRES 3 B 397 LYS LEU THR GLN ARG PRO GLY ILE LEU SER PHE ALA GLY
SEQRES 4 B 397 GLY LEU PRO ALA PRO GLU LEU PHE PRO LYS GLU GLU ALA
SEQRES 5 B 397 ALA GLU ALA ALA ALA ARG ILE LEU ARG GLU LYS GLY GLU
SEQRES 6 B 397 VAL ALA LEU GLN TYR SER PRO THR GLU GLY TYR ALA PRO
SEQRES 7 B 397 LEU ARG ALA PHE VAL ALA GLU TRP ILE GLY VAL ARG PRO
SEQRES 8 B 397 GLU GLU VAL LEU ILE THR THR GLY SER GLN GLN ALA LEU
SEQRES 9 B 397 ASP LEU VAL GLY LYS VAL PHE LEU ASP GLU GLY SER PRO
SEQRES 10 B 397 VAL LEU LEU GLU ALA PRO SER TYR MET GLY ALA ILE GLN
SEQRES 11 B 397 ALA PHE ARG LEU GLN GLY PRO ARG PHE LEU THR VAL PRO
SEQRES 12 B 397 ALA GLY GLU GLU GLY PRO ASP LEU ASP ALA LEU GLU GLU
SEQRES 13 B 397 VAL LEU LYS ARG GLU ARG PRO ARG PHE LEU TYR LEU ILE
SEQRES 14 B 397 PRO SER PHE GLN ASN PRO THR GLY GLY LEU THR PRO LEU
SEQRES 15 B 397 PRO ALA ARG LYS ARG LEU LEU GLN MET VAL MET GLU ARG
SEQRES 16 B 397 GLY LEU VAL VAL VAL GLU ASP ASP ALA TYR ARG GLU LEU
SEQRES 17 B 397 TYR PHE GLY GLU ALA ARG LEU PRO SER LEU PHE GLU LEU
SEQRES 18 B 397 ALA ARG GLU ALA GLY TYR PRO GLY VAL ILE TYR LEU GLY
SEQRES 19 B 397 SER PHE SER LYS VAL LEU SER PRO GLY LEU ARG VAL ALA
SEQRES 20 B 397 PHE ALA VAL ALA HIS PRO GLU ALA LEU GLN LYS LEU VAL
SEQRES 21 B 397 GLN ALA LYS GLN GLY ALA ASP LEU HIS THR PRO MET LEU
SEQRES 22 B 397 ASN GLN MET LEU VAL HIS GLU LEU LEU LYS GLU GLY PHE
SEQRES 23 B 397 SER GLU ARG LEU GLU ARG VAL ARG ARG VAL TYR ARG GLU
SEQRES 24 B 397 LYS ALA GLN ALA MET LEU HIS ALA LEU ASP ARG GLU VAL
SEQRES 25 B 397 PRO LYS GLU VAL ARG TYR THR ARG PRO LYS GLY GLY MET
SEQRES 26 B 397 PHE VAL TRP MET GLU LEU PRO LYS GLY LEU SER ALA GLU
SEQRES 27 B 397 GLY LEU PHE ARG ARG ALA LEU GLU GLU ASN VAL ALA PHE
SEQRES 28 B 397 VAL PRO GLY GLY PRO PHE PHE ALA ASN GLY GLY GLY GLU
SEQRES 29 B 397 ASN THR LEU ARG LEU SER TYR ALA THR LEU ASP ARG GLU
SEQRES 30 B 397 GLY ILE ALA GLU GLY VAL ARG ARG LEU GLY ARG ALA LEU
SEQRES 31 B 397 LYS GLY LEU LEU ALA LEU VAL
HET N5F A 500 26
HET N5F B 501 26
HETNAM N5F (2S)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)
HETNAM 2 N5F METHYL]PYRIDIN-4-YL}METHYL)AMINO]HEXANEDIOIC ACID
FORMUL 3 N5F 2(C14 H21 N2 O9 P)
FORMUL 5 HOH *431(H2 O)
HELIX 1 1 SER A 5 PHE A 10 1 6
HELIX 2 2 GLY A 11 ILE A 17 1 7
HELIX 3 3 SER A 20 GLN A 30 1 11
HELIX 4 4 ALA A 43 PHE A 47 5 5
HELIX 5 5 PRO A 48 LEU A 68 1 21
HELIX 6 6 TYR A 76 GLY A 88 1 13
HELIX 7 7 ARG A 90 GLU A 92 5 3
HELIX 8 8 GLY A 99 LEU A 112 1 14
HELIX 9 9 TYR A 125 LEU A 134 1 10
HELIX 10 10 ASP A 150 GLU A 161 1 12
HELIX 11 11 PRO A 181 GLY A 196 1 16
HELIX 12 12 SER A 217 GLY A 226 1 10
HELIX 13 13 HIS A 252 LEU A 268 1 17
HELIX 14 14 PRO A 271 LYS A 283 1 13
HELIX 15 15 GLY A 285 VAL A 312 1 28
HELIX 16 16 SER A 336 GLU A 347 1 12
HELIX 17 17 GLY A 355 PHE A 358 5 4
HELIX 18 18 ASP A 375 LEU A 396 1 22
HELIX 19 19 SER B 5 PHE B 10 1 6
HELIX 20 20 GLY B 11 ILE B 17 1 7
HELIX 21 21 SER B 20 GLN B 30 1 11
HELIX 22 22 ALA B 43 PHE B 47 5 5
HELIX 23 23 PRO B 48 LEU B 68 1 21
HELIX 24 24 TYR B 76 GLY B 88 1 13
HELIX 25 25 ARG B 90 GLU B 92 5 3
HELIX 26 26 THR B 98 LEU B 112 1 15
HELIX 27 27 TYR B 125 LEU B 134 1 10
HELIX 28 28 ASP B 150 GLU B 161 1 12
HELIX 29 29 PRO B 181 GLY B 196 1 16
HELIX 30 30 SER B 217 GLY B 226 1 10
HELIX 31 31 HIS B 252 LEU B 268 1 17
HELIX 32 32 PRO B 271 LYS B 283 1 13
HELIX 33 33 GLY B 285 VAL B 312 1 28
HELIX 34 34 SER B 336 GLU B 347 1 12
HELIX 35 35 GLY B 355 PHE B 358 5 4
HELIX 36 36 ASP B 375 LEU B 396 1 22
SHEET 1 A 5 LEU A 35 PHE A 37 0
SHEET 2 A 5 VAL A 349 PRO A 353 1 O ALA A 350 N PHE A 37
SHEET 3 A 5 THR A 366 SER A 370 -1 O ARG A 368 N VAL A 352
SHEET 4 A 5 PHE A 326 GLU A 330 -1 N VAL A 327 O LEU A 369
SHEET 5 A 5 ARG A 317 TYR A 318 -1 N ARG A 317 O GLU A 330
SHEET 1 B 8 VAL A 94 THR A 97 0
SHEET 2 B 8 ALA A 247 VAL A 250 -1 O ALA A 249 N LEU A 95
SHEET 3 B 8 VAL A 230 SER A 235 -1 N TYR A 232 O VAL A 250
SHEET 4 B 8 VAL A 199 ASP A 202 1 N VAL A 199 O ILE A 231
SHEET 5 B 8 LEU A 166 LEU A 168 1 N LEU A 166 O VAL A 200
SHEET 6 B 8 PRO A 117 ALA A 122 1 N LEU A 119 O TYR A 167
SHEET 7 B 8 ARG A 138 GLY A 145 1 O LEU A 140 N VAL A 118
SHEET 8 B 8 GLY A 148 PRO A 149 -1 O GLY A 148 N GLY A 145
SHEET 1 C 5 LEU B 35 PHE B 37 0
SHEET 2 C 5 VAL B 349 PRO B 353 1 O ALA B 350 N PHE B 37
SHEET 3 C 5 THR B 366 SER B 370 -1 O ARG B 368 N VAL B 352
SHEET 4 C 5 PHE B 326 GLU B 330 -1 N VAL B 327 O LEU B 369
SHEET 5 C 5 ARG B 317 TYR B 318 -1 N ARG B 317 O GLU B 330
SHEET 1 D 5 VAL B 94 THR B 97 0
SHEET 2 D 5 ALA B 247 VAL B 250 -1 O ALA B 249 N LEU B 95
SHEET 3 D 5 VAL B 230 SER B 235 -1 N GLY B 234 O PHE B 248
SHEET 4 D 5 VAL B 199 ASP B 202 1 N VAL B 199 O ILE B 231
SHEET 5 D 5 LEU B 166 LEU B 168 1 N LEU B 166 O VAL B 200
SHEET 1 E 3 PRO B 117 ALA B 122 0
SHEET 2 E 3 ARG B 138 GLY B 145 1 O LEU B 140 N VAL B 118
SHEET 3 E 3 GLY B 148 PRO B 149 -1 O GLY B 148 N GLY B 145
CISPEP 1 ALA A 122 PRO A 123 0 -0.27
CISPEP 2 ASN A 174 PRO A 175 0 9.72
CISPEP 3 ALA B 122 PRO B 123 0 -1.12
CISPEP 4 ASN B 174 PRO B 175 0 10.81
SITE 1 AC1 17 ILE A 22 ARG A 23 GLY A 39 GLY A 40
SITE 2 AC1 17 GLY A 99 SER A 100 GLN A 101 TYR A 125
SITE 3 AC1 17 ASN A 174 ASP A 202 TYR A 205 SER A 235
SITE 4 AC1 17 SER A 237 LYS A 238 ARG A 245 ARG A 368
SITE 5 AC1 17 TYR B 70
SITE 1 AC2 17 TYR A 70 ILE B 22 ARG B 23 GLY B 39
SITE 2 AC2 17 GLY B 40 GLY B 99 SER B 100 GLN B 101
SITE 3 AC2 17 TYR B 125 ASN B 174 ASP B 202 TYR B 205
SITE 4 AC2 17 SER B 235 SER B 237 LYS B 238 ARG B 245
SITE 5 AC2 17 ARG B 368
CRYST1 55.279 93.243 150.880 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018090 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010725 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006628 0.00000