data_3CBN # _entry.id 3CBN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3CBN RCSB RCSB046580 WWPDB D_1000046580 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-10241d _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CBN _pdbx_database_status.recvd_initial_deposition_date 2008-02-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Satyanarayana, L.' 1 ? 'Eswaramoorthy, S.' 2 ? 'Burley, S.K.' 3 0000-0002-2487-9713 'Swaminathan, S.' 4 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 5 ? # _citation.id primary _citation.title 'Crystal structure of a conserved protein (MTH639) from Methanobacterium thermoautotrophicum.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Satyanarayana, L.' 1 ? primary 'Eswaramoorthy, S.' 2 ? primary 'Burley, S.K.' 3 0000-0002-2487-9713 primary 'Swaminathan, S.' 4 ? # _cell.entry_id 3CBN _cell.length_a 31.559 _cell.length_b 63.162 _cell.length_c 32.182 _cell.angle_alpha 90.00 _cell.angle_beta 112.33 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CBN _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Conserved protein MTH639' 17286.068 1 ? ? 'Residues 22-161' ? 2 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLGVLRYTLRARGHPNVTAGHRTTFEVTVDPEIGETADCIIGVSSSDSISTLPDE(MSE)KRAIARESSLVRVIL RTENGYDEIRGYGHPELTLDHPTDIVCRKSDYICSRTL(MSE)IRADKAAFDLDENLVRDLRKGRELKVEIIVEYEGHHH HHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLGVLRYTLRARGHPNVTAGHRTTFEVTVDPEIGETADCIIGVSSSDSISTLPDEMKRAIARESSLVRVILRTENGYDE IRGYGHPELTLDHPTDIVCRKSDYICSRTLMIRADKAAFDLDENLVRDLRKGRELKVEIIVEYEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-10241d # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 GLY n 1 5 VAL n 1 6 LEU n 1 7 ARG n 1 8 TYR n 1 9 THR n 1 10 LEU n 1 11 ARG n 1 12 ALA n 1 13 ARG n 1 14 GLY n 1 15 HIS n 1 16 PRO n 1 17 ASN n 1 18 VAL n 1 19 THR n 1 20 ALA n 1 21 GLY n 1 22 HIS n 1 23 ARG n 1 24 THR n 1 25 THR n 1 26 PHE n 1 27 GLU n 1 28 VAL n 1 29 THR n 1 30 VAL n 1 31 ASP n 1 32 PRO n 1 33 GLU n 1 34 ILE n 1 35 GLY n 1 36 GLU n 1 37 THR n 1 38 ALA n 1 39 ASP n 1 40 CYS n 1 41 ILE n 1 42 ILE n 1 43 GLY n 1 44 VAL n 1 45 SER n 1 46 SER n 1 47 SER n 1 48 ASP n 1 49 SER n 1 50 ILE n 1 51 SER n 1 52 THR n 1 53 LEU n 1 54 PRO n 1 55 ASP n 1 56 GLU n 1 57 MSE n 1 58 LYS n 1 59 ARG n 1 60 ALA n 1 61 ILE n 1 62 ALA n 1 63 ARG n 1 64 GLU n 1 65 SER n 1 66 SER n 1 67 LEU n 1 68 VAL n 1 69 ARG n 1 70 VAL n 1 71 ILE n 1 72 LEU n 1 73 ARG n 1 74 THR n 1 75 GLU n 1 76 ASN n 1 77 GLY n 1 78 TYR n 1 79 ASP n 1 80 GLU n 1 81 ILE n 1 82 ARG n 1 83 GLY n 1 84 TYR n 1 85 GLY n 1 86 HIS n 1 87 PRO n 1 88 GLU n 1 89 LEU n 1 90 THR n 1 91 LEU n 1 92 ASP n 1 93 HIS n 1 94 PRO n 1 95 THR n 1 96 ASP n 1 97 ILE n 1 98 VAL n 1 99 CYS n 1 100 ARG n 1 101 LYS n 1 102 SER n 1 103 ASP n 1 104 TYR n 1 105 ILE n 1 106 CYS n 1 107 SER n 1 108 ARG n 1 109 THR n 1 110 LEU n 1 111 MSE n 1 112 ILE n 1 113 ARG n 1 114 ALA n 1 115 ASP n 1 116 LYS n 1 117 ALA n 1 118 ALA n 1 119 PHE n 1 120 ASP n 1 121 LEU n 1 122 ASP n 1 123 GLU n 1 124 ASN n 1 125 LEU n 1 126 VAL n 1 127 ARG n 1 128 ASP n 1 129 LEU n 1 130 ARG n 1 131 LYS n 1 132 GLY n 1 133 ARG n 1 134 GLU n 1 135 LEU n 1 136 LYS n 1 137 VAL n 1 138 GLU n 1 139 ILE n 1 140 ILE n 1 141 VAL n 1 142 GLU n 1 143 TYR n 1 144 GLU n 1 145 GLY n 1 146 HIS n 1 147 HIS n 1 148 HIS n 1 149 HIS n 1 150 HIS n 1 151 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Methanothermobacter _entity_src_gen.pdbx_gene_src_gene MTH639 _entity_src_gen.gene_src_species 'Methanothermobacter thermautotrophicus' _entity_src_gen.gene_src_strain 'Delta H' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanothermobacter thermautotrophicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 187420 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-codon+RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-pSGX3(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O26735_METTH _struct_ref.pdbx_db_accession O26735 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GVLRYTLRARGHPNVTAGHRTTFEVTVDPEIGETADCIIGVSSSDSISTLPDEMKRAIARESSLVRVILRTENGYDEIRG YGHPELTLDHPTDIVCRKSDYICSRTLMIRADKAAFDLDENLVRDLRKGRELKVEIIVEY ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CBN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 143 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O26735 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 161 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 161 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3CBN MSE A 1 ? UNP O26735 ? ? 'expression tag' 19 1 1 3CBN SER A 2 ? UNP O26735 ? ? 'expression tag' 20 2 1 3CBN LEU A 3 ? UNP O26735 ? ? 'expression tag' 21 3 1 3CBN GLU A 144 ? UNP O26735 ? ? 'expression tag' 162 4 1 3CBN GLY A 145 ? UNP O26735 ? ? 'expression tag' 163 5 1 3CBN HIS A 146 ? UNP O26735 ? ? 'expression tag' 164 6 1 3CBN HIS A 147 ? UNP O26735 ? ? 'expression tag' 165 7 1 3CBN HIS A 148 ? UNP O26735 ? ? 'expression tag' 166 8 1 3CBN HIS A 149 ? UNP O26735 ? ? 'expression tag' 167 9 1 3CBN HIS A 150 ? UNP O26735 ? ? 'expression tag' 168 10 1 3CBN HIS A 151 ? UNP O26735 ? ? 'expression tag' 169 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3CBN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.72 _exptl_crystal.density_percent_sol 28.3 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '20%(w/v) PEG 3350, 0.1M Bis-Tris buffer pH 5.5. 3%(w/v) 6-Aminohexanoic acid, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2008-02-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9790 # _reflns.entry_id 3CBN _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.63 _reflns.d_resolution_low 50.0 _reflns.number_all 14179 _reflns.number_obs 14179 _reflns.percent_possible_obs 96.5 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 34.4 _reflns.B_iso_Wilson_estimate 15.2 _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.63 _reflns_shell.d_res_low 1.69 _reflns_shell.percent_possible_all 94.3 _reflns_shell.Rmerge_I_obs 0.107 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1389 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3CBN _refine.ls_d_res_high 1.63 _refine.ls_d_res_low 29.8 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 14179 _refine.ls_number_reflns_obs 14122 _refine.ls_number_reflns_R_free 574 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_all 0.219 _refine.ls_R_factor_obs 0.213 _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.244 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.B_iso_mean 14.2 _refine.aniso_B[1][1] -0.113 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 2.415 _refine.aniso_B[2][2] -0.940 _refine.aniso_B[2][3] 0.0 _refine.aniso_B[3][3] 1.052 _refine.details ;Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled as alanines. ; _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3CBN _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.11 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1136 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 1262 _refine_hist.d_res_high 1.63 _refine_hist.d_res_low 29.8 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.76 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.63 _refine_ls_shell.d_res_low 1.73 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.244 _refine_ls_shell.percent_reflns_obs 92.5 _refine_ls_shell.R_factor_R_free 0.277 _refine_ls_shell.R_factor_R_free_error 0.029 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 91 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2153 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CBN _struct.title 'Crystal structure of a conserved protein (MTH639) from Methanobacterium thermoautotrophicum' _struct.pdbx_descriptor 'Conserved protein MTH639' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CBN _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;RP-A, 10241d, PSI-II, NYSGXRC, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 49 ? LEU A 53 ? SER A 67 LEU A 71 5 ? 5 HELX_P HELX_P2 2 PRO A 54 ? ALA A 62 ? PRO A 72 ALA A 80 1 ? 9 HELX_P HELX_P3 3 ALA A 117 ? LEU A 121 ? ALA A 135 LEU A 139 5 ? 5 HELX_P HELX_P4 4 ASP A 122 ? LYS A 131 ? ASP A 140 LYS A 149 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 56 C ? ? ? 1_555 A MSE 57 N ? ? A GLU 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A MSE 57 C ? ? ? 1_555 A LYS 58 N ? ? A MSE 75 A LYS 76 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A LEU 110 C ? ? ? 1_555 A MSE 111 N ? ? A LEU 128 A MSE 129 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MSE 111 C ? ? ? 1_555 A ILE 112 N ? ? A MSE 129 A ILE 130 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 4 ? ARG A 13 ? GLY A 22 ARG A 31 A 2 GLU A 134 ? TYR A 143 ? GLU A 152 TYR A 161 A 3 LEU A 67 ? ARG A 73 ? LEU A 85 ARG A 91 A 4 TYR A 78 ? TYR A 84 ? TYR A 96 TYR A 102 B 1 ILE A 41 ? GLY A 43 ? ILE A 59 GLY A 61 B 2 THR A 25 ? THR A 29 ? THR A 43 THR A 47 B 3 ASP A 96 ? ARG A 100 ? ASP A 114 ARG A 118 B 4 THR A 109 ? MSE A 111 ? THR A 127 MSE A 129 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 12 ? N ALA A 30 O LEU A 135 ? O LEU A 153 A 2 3 O ILE A 140 ? O ILE A 158 N ARG A 69 ? N ARG A 87 A 3 4 N VAL A 68 ? N VAL A 86 O GLY A 83 ? O GLY A 101 B 1 2 O ILE A 42 ? O ILE A 60 N GLU A 27 ? N GLU A 45 B 2 3 N PHE A 26 ? N PHE A 44 O CYS A 99 ? O CYS A 117 B 3 4 N VAL A 98 ? N VAL A 116 O LEU A 110 ? O LEU A 128 # _database_PDB_matrix.entry_id 3CBN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3CBN _atom_sites.fract_transf_matrix[1][1] 0.031687 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.013015 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015832 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033592 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 19 ? ? ? A . n A 1 2 SER 2 20 ? ? ? A . n A 1 3 LEU 3 21 21 LEU LEU A . n A 1 4 GLY 4 22 22 GLY GLY A . n A 1 5 VAL 5 23 23 VAL VAL A . n A 1 6 LEU 6 24 24 LEU LEU A . n A 1 7 ARG 7 25 25 ARG ARG A . n A 1 8 TYR 8 26 26 TYR TYR A . n A 1 9 THR 9 27 27 THR THR A . n A 1 10 LEU 10 28 28 LEU LEU A . n A 1 11 ARG 11 29 29 ARG ARG A . n A 1 12 ALA 12 30 30 ALA ALA A . n A 1 13 ARG 13 31 31 ARG ARG A . n A 1 14 GLY 14 32 32 GLY GLY A . n A 1 15 HIS 15 33 33 HIS HIS A . n A 1 16 PRO 16 34 34 PRO PRO A . n A 1 17 ASN 17 35 35 ASN ASN A . n A 1 18 VAL 18 36 36 VAL VAL A . n A 1 19 THR 19 37 37 THR THR A . n A 1 20 ALA 20 38 38 ALA ALA A . n A 1 21 GLY 21 39 39 GLY GLY A . n A 1 22 HIS 22 40 40 HIS HIS A . n A 1 23 ARG 23 41 41 ARG ARG A . n A 1 24 THR 24 42 42 THR THR A . n A 1 25 THR 25 43 43 THR THR A . n A 1 26 PHE 26 44 44 PHE PHE A . n A 1 27 GLU 27 45 45 GLU GLU A . n A 1 28 VAL 28 46 46 VAL VAL A . n A 1 29 THR 29 47 47 THR THR A . n A 1 30 VAL 30 48 48 VAL VAL A . n A 1 31 ASP 31 49 49 ASP ASP A . n A 1 32 PRO 32 50 50 PRO PRO A . n A 1 33 GLU 33 51 51 GLU GLU A . n A 1 34 ILE 34 52 52 ILE ILE A . n A 1 35 GLY 35 53 53 GLY GLY A . n A 1 36 GLU 36 54 54 GLU ALA A . n A 1 37 THR 37 55 55 THR THR A . n A 1 38 ALA 38 56 56 ALA ALA A . n A 1 39 ASP 39 57 57 ASP ASP A . n A 1 40 CYS 40 58 58 CYS CYS A . n A 1 41 ILE 41 59 59 ILE ILE A . n A 1 42 ILE 42 60 60 ILE ILE A . n A 1 43 GLY 43 61 61 GLY GLY A . n A 1 44 VAL 44 62 62 VAL VAL A . n A 1 45 SER 45 63 63 SER SER A . n A 1 46 SER 46 64 64 SER SER A . n A 1 47 SER 47 65 65 SER SER A . n A 1 48 ASP 48 66 66 ASP ASP A . n A 1 49 SER 49 67 67 SER SER A . n A 1 50 ILE 50 68 68 ILE ILE A . n A 1 51 SER 51 69 69 SER SER A . n A 1 52 THR 52 70 70 THR THR A . n A 1 53 LEU 53 71 71 LEU LEU A . n A 1 54 PRO 54 72 72 PRO PRO A . n A 1 55 ASP 55 73 73 ASP ASP A . n A 1 56 GLU 56 74 74 GLU GLU A . n A 1 57 MSE 57 75 75 MSE MSE A . n A 1 58 LYS 58 76 76 LYS LYS A . n A 1 59 ARG 59 77 77 ARG ARG A . n A 1 60 ALA 60 78 78 ALA ALA A . n A 1 61 ILE 61 79 79 ILE ILE A . n A 1 62 ALA 62 80 80 ALA ALA A . n A 1 63 ARG 63 81 81 ARG ARG A . n A 1 64 GLU 64 82 82 GLU GLU A . n A 1 65 SER 65 83 ? ? ? A . n A 1 66 SER 66 84 84 SER SER A . n A 1 67 LEU 67 85 85 LEU LEU A . n A 1 68 VAL 68 86 86 VAL VAL A . n A 1 69 ARG 69 87 87 ARG ARG A . n A 1 70 VAL 70 88 88 VAL VAL A . n A 1 71 ILE 71 89 89 ILE ILE A . n A 1 72 LEU 72 90 90 LEU LEU A . n A 1 73 ARG 73 91 91 ARG ARG A . n A 1 74 THR 74 92 92 THR THR A . n A 1 75 GLU 75 93 93 GLU GLU A . n A 1 76 ASN 76 94 94 ASN ASN A . n A 1 77 GLY 77 95 95 GLY GLY A . n A 1 78 TYR 78 96 96 TYR TYR A . n A 1 79 ASP 79 97 97 ASP ASP A . n A 1 80 GLU 80 98 98 GLU GLU A . n A 1 81 ILE 81 99 99 ILE ILE A . n A 1 82 ARG 82 100 100 ARG ARG A . n A 1 83 GLY 83 101 101 GLY GLY A . n A 1 84 TYR 84 102 102 TYR TYR A . n A 1 85 GLY 85 103 103 GLY GLY A . n A 1 86 HIS 86 104 104 HIS HIS A . n A 1 87 PRO 87 105 105 PRO PRO A . n A 1 88 GLU 88 106 106 GLU GLU A . n A 1 89 LEU 89 107 107 LEU LEU A . n A 1 90 THR 90 108 108 THR THR A . n A 1 91 LEU 91 109 109 LEU LEU A . n A 1 92 ASP 92 110 110 ASP ASP A . n A 1 93 HIS 93 111 111 HIS HIS A . n A 1 94 PRO 94 112 112 PRO PRO A . n A 1 95 THR 95 113 113 THR THR A . n A 1 96 ASP 96 114 114 ASP ASP A . n A 1 97 ILE 97 115 115 ILE ILE A . n A 1 98 VAL 98 116 116 VAL VAL A . n A 1 99 CYS 99 117 117 CYS CYS A . n A 1 100 ARG 100 118 118 ARG ARG A . n A 1 101 LYS 101 119 119 LYS LYS A . n A 1 102 SER 102 120 120 SER SER A . n A 1 103 ASP 103 121 121 ASP ASP A . n A 1 104 TYR 104 122 122 TYR TYR A . n A 1 105 ILE 105 123 123 ILE ILE A . n A 1 106 CYS 106 124 124 CYS CYS A . n A 1 107 SER 107 125 125 SER SER A . n A 1 108 ARG 108 126 126 ARG ARG A . n A 1 109 THR 109 127 127 THR THR A . n A 1 110 LEU 110 128 128 LEU LEU A . n A 1 111 MSE 111 129 129 MSE MSE A . n A 1 112 ILE 112 130 130 ILE ILE A . n A 1 113 ARG 113 131 131 ARG ARG A . n A 1 114 ALA 114 132 132 ALA ALA A . n A 1 115 ASP 115 133 133 ASP ASP A . n A 1 116 LYS 116 134 134 LYS LYS A . n A 1 117 ALA 117 135 135 ALA ALA A . n A 1 118 ALA 118 136 136 ALA ALA A . n A 1 119 PHE 119 137 137 PHE PHE A . n A 1 120 ASP 120 138 138 ASP ASP A . n A 1 121 LEU 121 139 139 LEU LEU A . n A 1 122 ASP 122 140 140 ASP ASP A . n A 1 123 GLU 123 141 141 GLU GLU A . n A 1 124 ASN 124 142 142 ASN ASN A . n A 1 125 LEU 125 143 143 LEU LEU A . n A 1 126 VAL 126 144 144 VAL VAL A . n A 1 127 ARG 127 145 145 ARG ARG A . n A 1 128 ASP 128 146 146 ASP ASP A . n A 1 129 LEU 129 147 147 LEU LEU A . n A 1 130 ARG 130 148 148 ARG ARG A . n A 1 131 LYS 131 149 149 LYS LYS A . n A 1 132 GLY 132 150 150 GLY GLY A . n A 1 133 ARG 133 151 151 ARG ARG A . n A 1 134 GLU 134 152 152 GLU GLU A . n A 1 135 LEU 135 153 153 LEU LEU A . n A 1 136 LYS 136 154 154 LYS LYS A . n A 1 137 VAL 137 155 155 VAL VAL A . n A 1 138 GLU 138 156 156 GLU GLU A . n A 1 139 ILE 139 157 157 ILE ILE A . n A 1 140 ILE 140 158 158 ILE ILE A . n A 1 141 VAL 141 159 159 VAL VAL A . n A 1 142 GLU 142 160 160 GLU GLU A . n A 1 143 TYR 143 161 161 TYR TYR A . n A 1 144 GLU 144 162 162 GLU GLU A . n A 1 145 GLY 145 163 163 GLY GLY A . n A 1 146 HIS 146 164 164 HIS HIS A . n A 1 147 HIS 147 165 165 HIS HIS A . n A 1 148 HIS 148 166 ? ? ? A . n A 1 149 HIS 149 167 ? ? ? A . n A 1 150 HIS 150 168 ? ? ? A . n A 1 151 HIS 151 169 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 170 1 HOH HOH A . B 2 HOH 2 171 2 HOH HOH A . B 2 HOH 3 172 3 HOH HOH A . B 2 HOH 4 173 4 HOH HOH A . B 2 HOH 5 174 5 HOH HOH A . B 2 HOH 6 175 6 HOH HOH A . B 2 HOH 7 176 7 HOH HOH A . B 2 HOH 8 177 8 HOH HOH A . B 2 HOH 9 178 9 HOH HOH A . B 2 HOH 10 179 10 HOH HOH A . B 2 HOH 11 180 11 HOH HOH A . B 2 HOH 12 181 12 HOH HOH A . B 2 HOH 13 182 13 HOH HOH A . B 2 HOH 14 183 14 HOH HOH A . B 2 HOH 15 184 15 HOH HOH A . B 2 HOH 16 185 16 HOH HOH A . B 2 HOH 17 186 17 HOH HOH A . B 2 HOH 18 187 18 HOH HOH A . B 2 HOH 19 188 19 HOH HOH A . B 2 HOH 20 189 20 HOH HOH A . B 2 HOH 21 190 21 HOH HOH A . B 2 HOH 22 191 22 HOH HOH A . B 2 HOH 23 192 23 HOH HOH A . B 2 HOH 24 193 24 HOH HOH A . B 2 HOH 25 194 25 HOH HOH A . B 2 HOH 26 195 26 HOH HOH A . B 2 HOH 27 196 27 HOH HOH A . B 2 HOH 28 197 28 HOH HOH A . B 2 HOH 29 198 29 HOH HOH A . B 2 HOH 30 199 30 HOH HOH A . B 2 HOH 31 200 31 HOH HOH A . B 2 HOH 32 201 32 HOH HOH A . B 2 HOH 33 202 33 HOH HOH A . B 2 HOH 34 203 34 HOH HOH A . B 2 HOH 35 204 35 HOH HOH A . B 2 HOH 36 205 36 HOH HOH A . B 2 HOH 37 206 37 HOH HOH A . B 2 HOH 38 207 38 HOH HOH A . B 2 HOH 39 208 39 HOH HOH A . B 2 HOH 40 209 40 HOH HOH A . B 2 HOH 41 210 41 HOH HOH A . B 2 HOH 42 211 42 HOH HOH A . B 2 HOH 43 212 43 HOH HOH A . B 2 HOH 44 213 44 HOH HOH A . B 2 HOH 45 214 45 HOH HOH A . B 2 HOH 46 215 46 HOH HOH A . B 2 HOH 47 216 47 HOH HOH A . B 2 HOH 48 217 48 HOH HOH A . B 2 HOH 49 218 49 HOH HOH A . B 2 HOH 50 219 50 HOH HOH A . B 2 HOH 51 220 51 HOH HOH A . B 2 HOH 52 221 52 HOH HOH A . B 2 HOH 53 222 53 HOH HOH A . B 2 HOH 54 223 54 HOH HOH A . B 2 HOH 55 224 55 HOH HOH A . B 2 HOH 56 225 56 HOH HOH A . B 2 HOH 57 226 57 HOH HOH A . B 2 HOH 58 227 58 HOH HOH A . B 2 HOH 59 228 59 HOH HOH A . B 2 HOH 60 229 60 HOH HOH A . B 2 HOH 61 230 61 HOH HOH A . B 2 HOH 62 231 62 HOH HOH A . B 2 HOH 63 232 63 HOH HOH A . B 2 HOH 64 233 64 HOH HOH A . B 2 HOH 65 234 65 HOH HOH A . B 2 HOH 66 235 66 HOH HOH A . B 2 HOH 67 236 67 HOH HOH A . B 2 HOH 68 237 68 HOH HOH A . B 2 HOH 69 238 69 HOH HOH A . B 2 HOH 70 239 70 HOH HOH A . B 2 HOH 71 240 71 HOH HOH A . B 2 HOH 72 241 72 HOH HOH A . B 2 HOH 73 242 73 HOH HOH A . B 2 HOH 74 243 74 HOH HOH A . B 2 HOH 75 244 77 HOH HOH A . B 2 HOH 76 245 78 HOH HOH A . B 2 HOH 77 246 79 HOH HOH A . B 2 HOH 78 247 80 HOH HOH A . B 2 HOH 79 248 81 HOH HOH A . B 2 HOH 80 249 82 HOH HOH A . B 2 HOH 81 250 83 HOH HOH A . B 2 HOH 82 251 84 HOH HOH A . B 2 HOH 83 252 85 HOH HOH A . B 2 HOH 84 253 86 HOH HOH A . B 2 HOH 85 254 87 HOH HOH A . B 2 HOH 86 255 88 HOH HOH A . B 2 HOH 87 256 89 HOH HOH A . B 2 HOH 88 257 90 HOH HOH A . B 2 HOH 89 258 91 HOH HOH A . B 2 HOH 90 259 92 HOH HOH A . B 2 HOH 91 260 93 HOH HOH A . B 2 HOH 92 261 94 HOH HOH A . B 2 HOH 93 262 95 HOH HOH A . B 2 HOH 94 263 96 HOH HOH A . B 2 HOH 95 264 97 HOH HOH A . B 2 HOH 96 265 98 HOH HOH A . B 2 HOH 97 266 99 HOH HOH A . B 2 HOH 98 267 100 HOH HOH A . B 2 HOH 99 268 101 HOH HOH A . B 2 HOH 100 269 102 HOH HOH A . B 2 HOH 101 270 103 HOH HOH A . B 2 HOH 102 271 104 HOH HOH A . B 2 HOH 103 272 105 HOH HOH A . B 2 HOH 104 273 106 HOH HOH A . B 2 HOH 105 274 107 HOH HOH A . B 2 HOH 106 275 108 HOH HOH A . B 2 HOH 107 276 109 HOH HOH A . B 2 HOH 108 277 110 HOH HOH A . B 2 HOH 109 278 111 HOH HOH A . B 2 HOH 110 279 112 HOH HOH A . B 2 HOH 111 280 114 HOH HOH A . B 2 HOH 112 281 115 HOH HOH A . B 2 HOH 113 282 116 HOH HOH A . B 2 HOH 114 283 117 HOH HOH A . B 2 HOH 115 284 118 HOH HOH A . B 2 HOH 116 285 119 HOH HOH A . B 2 HOH 117 286 120 HOH HOH A . B 2 HOH 118 287 121 HOH HOH A . B 2 HOH 119 288 122 HOH HOH A . B 2 HOH 120 289 124 HOH HOH A . B 2 HOH 121 290 125 HOH HOH A . B 2 HOH 122 291 126 HOH HOH A . B 2 HOH 123 292 127 HOH HOH A . B 2 HOH 124 293 128 HOH HOH A . B 2 HOH 125 294 129 HOH HOH A . B 2 HOH 126 295 130 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 57 A MSE 75 ? MET SELENOMETHIONINE 2 A MSE 111 A MSE 129 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-02-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' citation_author 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 3 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SHELXD phasing . ? 2 SHARP phasing . ? 3 ARP/wARP 'model building' . ? 4 CNS refinement 1.1 ? 5 DENZO 'data reduction' . ? 6 HKL-2000 'data scaling' . ? 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 57 ? ? -69.43 1.51 2 1 LEU A 109 ? ? 39.36 56.17 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 54 ? CG ? A GLU 36 CG 2 1 Y 1 A GLU 54 ? CD ? A GLU 36 CD 3 1 Y 1 A GLU 54 ? OE1 ? A GLU 36 OE1 4 1 Y 1 A GLU 54 ? OE2 ? A GLU 36 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 19 ? A MSE 1 2 1 Y 1 A SER 20 ? A SER 2 3 1 Y 1 A SER 83 ? A SER 65 4 1 Y 1 A HIS 166 ? A HIS 148 5 1 Y 1 A HIS 167 ? A HIS 149 6 1 Y 1 A HIS 168 ? A HIS 150 7 1 Y 1 A HIS 169 ? A HIS 151 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #