HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-FEB-08 3CBW TITLE CRYSTAL STRUCTURE OF THE YDHT PROTEIN FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YDHT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 21-362; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YDHT, BSU05880; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IIZUKA,R.ROMERO,D.SMITH,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 20-OCT-21 3CBW 1 SEQADV REVDAT 5 03-FEB-21 3CBW 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 14-NOV-18 3CBW 1 AUTHOR REVDAT 3 25-OCT-17 3CBW 1 REMARK REVDAT 2 24-FEB-09 3CBW 1 VERSN REVDAT 1 11-MAR-08 3CBW 0 JRNL AUTH J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IIZUKA,R.ROMERO,D.SMITH, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE YDHT PROTEIN FROM BACILLUS JRNL TITL 2 SUBTILIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 145624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7331 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9735 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 527 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 592 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.339 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5587 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7627 ; 1.197 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 686 ; 5.849 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;33.977 ;24.638 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 871 ;11.903 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 791 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4392 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2643 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3860 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 534 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 104 ; 0.132 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 66 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3392 ; 0.873 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5391 ; 1.346 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2541 ; 1.821 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2224 ; 2.608 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5933 ; 1.062 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 592 ; 3.140 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5420 ; 1.829 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145644 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.269 REMARK 200 RESOLUTION RANGE LOW (A) : 72.548 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : 0.43900 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRIC ACID PH 3.5, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.80950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE MONOMERIC ASSEMBLY OF THE BIOLOGICAL REMARK 300 UNIT THAT IS SHOWN IN REMARK 350 IS PUTATIVE AT THE TIME OF REMARK 300 DEPOSITION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 SER A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 LYS A 22 REMARK 465 PRO A 23 REMARK 465 ILE A 24 REMARK 465 GLU A 25 REMARK 465 ALA A 26 REMARK 465 GLU A 363 REMARK 465 GLY A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 MET B 18 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 ALA B 21 REMARK 465 LYS B 22 REMARK 465 PRO B 23 REMARK 465 ILE B 24 REMARK 465 GLU B 25 REMARK 465 ALA B 26 REMARK 465 HIS B 27 REMARK 465 THR B 297 REMARK 465 ALA B 298 REMARK 465 ASN B 299 REMARK 465 GLY B 300 REMARK 465 SER B 301 REMARK 465 ASP B 326 REMARK 465 GLU B 327 REMARK 465 TRP B 328 REMARK 465 SER B 329 REMARK 465 ALA B 330 REMARK 465 ALA B 331 REMARK 465 VAL B 332 REMARK 465 ASN B 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 27 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 299 CG OD1 ND2 REMARK 470 HIS B 365 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 366 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 367 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 423 O HOH B 624 1.58 REMARK 500 O HOH A 512 O HOH A 645 1.72 REMARK 500 O HOH B 465 O HOH B 624 2.04 REMARK 500 O HOH A 470 O HOH A 542 2.13 REMARK 500 O HOH B 428 O HOH B 602 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 68 58.48 37.53 REMARK 500 ASP A 69 -69.61 -162.97 REMARK 500 PHE A 249 38.44 70.90 REMARK 500 ASP A 326 -132.09 49.78 REMARK 500 ASP B 69 -66.25 -162.41 REMARK 500 ARG B 96 72.80 -102.98 REMARK 500 TYR B 206 118.21 -39.72 REMARK 500 ASN B 207 25.85 42.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11098A RELATED DB: TARGETDB DBREF 3CBW A 21 362 UNP O05512 O05512_BACSU 21 362 DBREF 3CBW B 21 362 UNP O05512 O05512_BACSU 21 362 SEQADV 3CBW MET A 18 UNP O05512 EXPRESSION TAG SEQADV 3CBW SER A 19 UNP O05512 EXPRESSION TAG SEQADV 3CBW LEU A 20 UNP O05512 EXPRESSION TAG SEQADV 3CBW LYS A 153 UNP O05512 ASN 153 ENGINEERED MUTATION SEQADV 3CBW SER A 158 UNP O05512 ALA 158 ENGINEERED MUTATION SEQADV 3CBW VAL A 160 UNP O05512 ALA 160 ENGINEERED MUTATION SEQADV 3CBW GLU A 363 UNP O05512 EXPRESSION TAG SEQADV 3CBW GLY A 364 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS A 365 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS A 366 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS A 367 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS A 368 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS A 369 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS A 370 UNP O05512 EXPRESSION TAG SEQADV 3CBW MET B 18 UNP O05512 EXPRESSION TAG SEQADV 3CBW SER B 19 UNP O05512 EXPRESSION TAG SEQADV 3CBW LEU B 20 UNP O05512 EXPRESSION TAG SEQADV 3CBW LYS B 153 UNP O05512 ASN 153 ENGINEERED MUTATION SEQADV 3CBW SER B 158 UNP O05512 ALA 158 ENGINEERED MUTATION SEQADV 3CBW VAL B 160 UNP O05512 ALA 160 ENGINEERED MUTATION SEQADV 3CBW GLU B 363 UNP O05512 EXPRESSION TAG SEQADV 3CBW GLY B 364 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS B 365 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS B 366 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS B 367 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS B 368 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS B 369 UNP O05512 EXPRESSION TAG SEQADV 3CBW HIS B 370 UNP O05512 EXPRESSION TAG SEQRES 1 A 353 MET SER LEU ALA LYS PRO ILE GLU ALA HIS THR VAL SER SEQRES 2 A 353 PRO VAL ASN PRO ASN ALA GLN GLN THR THR LYS THR VAL SEQRES 3 A 353 MET ASN TRP LEU ALA HIS LEU PRO ASN ARG THR GLU ASN SEQRES 4 A 353 ARG VAL LEU SER GLY ALA PHE GLY GLY TYR SER HIS ASP SEQRES 5 A 353 THR PHE SER MET ALA GLU ALA ASP ARG ILE ARG SER ALA SEQRES 6 A 353 THR GLY GLN SER PRO ALA ILE TYR GLY CYS ASP TYR ALA SEQRES 7 A 353 ARG GLY TRP LEU GLU THR ALA ASN ILE GLU ASP SER ILE SEQRES 8 A 353 ASP VAL SER CYS ASN GLY ASP LEU MET SER TYR TRP LYS SEQRES 9 A 353 ASN GLY GLY ILE PRO GLN ILE SER LEU HIS LEU ALA ASN SEQRES 10 A 353 PRO ALA PHE GLN SER GLY HIS PHE LYS THR PRO ILE THR SEQRES 11 A 353 ASN ASP GLN TYR LYS LYS ILE LEU ASP SER SER THR VAL SEQRES 12 A 353 GLU GLY LYS ARG LEU ASN ALA MET LEU SER LYS ILE ALA SEQRES 13 A 353 ASP GLY LEU GLN GLU LEU GLU ASN GLN GLY VAL PRO VAL SEQRES 14 A 353 LEU PHE ARG PRO LEU HIS GLU MET ASN GLY GLU TRP PHE SEQRES 15 A 353 TRP TRP GLY LEU THR SER TYR ASN GLN LYS ASP ASN GLU SEQRES 16 A 353 ARG ILE SER LEU TYR LYS GLN LEU TYR LYS LYS ILE TYR SEQRES 17 A 353 HIS TYR MET THR ASP THR ARG GLY LEU ASP HIS LEU ILE SEQRES 18 A 353 TRP VAL TYR SER PRO ASP ALA ASN ARG ASP PHE LYS THR SEQRES 19 A 353 ASP PHE TYR PRO GLY ALA SER TYR VAL ASP ILE VAL GLY SEQRES 20 A 353 LEU ASP ALA TYR PHE GLN ASP ALA TYR SER ILE ASN GLY SEQRES 21 A 353 TYR ASP GLN LEU THR ALA LEU ASN LYS PRO PHE ALA PHE SEQRES 22 A 353 THR GLU VAL GLY PRO GLN THR ALA ASN GLY SER PHE ASP SEQRES 23 A 353 TYR SER LEU PHE ILE ASN ALA ILE LYS GLN LYS TYR PRO SEQRES 24 A 353 LYS THR ILE TYR PHE LEU ALA TRP ASN ASP GLU TRP SER SEQRES 25 A 353 ALA ALA VAL ASN LYS GLY ALA SER ALA LEU TYR HIS ASP SEQRES 26 A 353 SER TRP THR LEU ASN LYS GLY GLU ILE TRP ASN GLY ASP SEQRES 27 A 353 SER LEU THR PRO ILE VAL GLU GLU GLY HIS HIS HIS HIS SEQRES 28 A 353 HIS HIS SEQRES 1 B 353 MET SER LEU ALA LYS PRO ILE GLU ALA HIS THR VAL SER SEQRES 2 B 353 PRO VAL ASN PRO ASN ALA GLN GLN THR THR LYS THR VAL SEQRES 3 B 353 MET ASN TRP LEU ALA HIS LEU PRO ASN ARG THR GLU ASN SEQRES 4 B 353 ARG VAL LEU SER GLY ALA PHE GLY GLY TYR SER HIS ASP SEQRES 5 B 353 THR PHE SER MET ALA GLU ALA ASP ARG ILE ARG SER ALA SEQRES 6 B 353 THR GLY GLN SER PRO ALA ILE TYR GLY CYS ASP TYR ALA SEQRES 7 B 353 ARG GLY TRP LEU GLU THR ALA ASN ILE GLU ASP SER ILE SEQRES 8 B 353 ASP VAL SER CYS ASN GLY ASP LEU MET SER TYR TRP LYS SEQRES 9 B 353 ASN GLY GLY ILE PRO GLN ILE SER LEU HIS LEU ALA ASN SEQRES 10 B 353 PRO ALA PHE GLN SER GLY HIS PHE LYS THR PRO ILE THR SEQRES 11 B 353 ASN ASP GLN TYR LYS LYS ILE LEU ASP SER SER THR VAL SEQRES 12 B 353 GLU GLY LYS ARG LEU ASN ALA MET LEU SER LYS ILE ALA SEQRES 13 B 353 ASP GLY LEU GLN GLU LEU GLU ASN GLN GLY VAL PRO VAL SEQRES 14 B 353 LEU PHE ARG PRO LEU HIS GLU MET ASN GLY GLU TRP PHE SEQRES 15 B 353 TRP TRP GLY LEU THR SER TYR ASN GLN LYS ASP ASN GLU SEQRES 16 B 353 ARG ILE SER LEU TYR LYS GLN LEU TYR LYS LYS ILE TYR SEQRES 17 B 353 HIS TYR MET THR ASP THR ARG GLY LEU ASP HIS LEU ILE SEQRES 18 B 353 TRP VAL TYR SER PRO ASP ALA ASN ARG ASP PHE LYS THR SEQRES 19 B 353 ASP PHE TYR PRO GLY ALA SER TYR VAL ASP ILE VAL GLY SEQRES 20 B 353 LEU ASP ALA TYR PHE GLN ASP ALA TYR SER ILE ASN GLY SEQRES 21 B 353 TYR ASP GLN LEU THR ALA LEU ASN LYS PRO PHE ALA PHE SEQRES 22 B 353 THR GLU VAL GLY PRO GLN THR ALA ASN GLY SER PHE ASP SEQRES 23 B 353 TYR SER LEU PHE ILE ASN ALA ILE LYS GLN LYS TYR PRO SEQRES 24 B 353 LYS THR ILE TYR PHE LEU ALA TRP ASN ASP GLU TRP SER SEQRES 25 B 353 ALA ALA VAL ASN LYS GLY ALA SER ALA LEU TYR HIS ASP SEQRES 26 B 353 SER TRP THR LEU ASN LYS GLY GLU ILE TRP ASN GLY ASP SEQRES 27 B 353 SER LEU THR PRO ILE VAL GLU GLU GLY HIS HIS HIS HIS SEQRES 28 B 353 HIS HIS HET CIT B 1 13 HET CIT B 2 13 HET CIT B 3 13 HETNAM CIT CITRIC ACID FORMUL 3 CIT 3(C6 H8 O7) FORMUL 6 HOH *592(H2 O) HELIX 1 1 GLN A 37 LEU A 50 1 14 HELIX 2 2 PRO A 51 ARG A 53 5 3 HELIX 3 3 MET A 73 GLY A 84 1 12 HELIX 4 4 ASN A 103 ILE A 108 5 6 HELIX 5 5 CYS A 112 ASN A 122 1 11 HELIX 6 6 THR A 147 ASP A 156 1 10 HELIX 7 7 THR A 159 ASN A 181 1 23 HELIX 8 8 ASP A 210 ASP A 230 1 21 HELIX 9 9 GLY A 277 ALA A 283 1 7 HELIX 10 10 ASP A 303 TYR A 315 1 13 HELIX 11 11 ASN A 325 ASN A 333 5 9 HELIX 12 12 GLY A 335 ASP A 342 1 8 HELIX 13 13 GLN B 37 HIS B 49 1 13 HELIX 14 14 LEU B 50 ARG B 53 5 4 HELIX 15 15 MET B 73 GLY B 84 1 12 HELIX 16 16 ASN B 103 ILE B 108 5 6 HELIX 17 17 CYS B 112 ASN B 122 1 11 HELIX 18 18 THR B 147 ASP B 156 1 10 HELIX 19 19 THR B 159 GLN B 182 1 24 HELIX 20 20 ASP B 210 ASP B 230 1 21 HELIX 21 21 ASP B 271 ILE B 275 5 5 HELIX 22 22 GLY B 277 ALA B 283 1 7 HELIX 23 23 ASP B 303 TYR B 315 1 13 HELIX 24 24 GLY B 335 ASP B 342 1 8 SHEET 1 A 2 VAL A 58 LEU A 59 0 SHEET 2 A 2 THR A 345 LEU A 346 1 O LEU A 346 N VAL A 58 SHEET 1 B 9 GLY A 61 TYR A 66 0 SHEET 2 B 9 ILE A 89 ARG A 96 1 O GLY A 91 N GLY A 64 SHEET 3 B 9 ILE A 125 HIS A 131 1 O GLN A 127 N CYS A 92 SHEET 4 B 9 VAL A 186 ARG A 189 1 O ARG A 189 N ILE A 128 SHEET 5 B 9 LEU A 237 TYR A 241 1 O ILE A 238 N PHE A 188 SHEET 6 B 9 ILE A 262 PHE A 269 1 O ILE A 262 N TYR A 241 SHEET 7 B 9 PHE A 288 PRO A 295 1 O GLU A 292 N ALA A 267 SHEET 8 B 9 THR A 318 ALA A 323 1 O TYR A 320 N PHE A 290 SHEET 9 B 9 GLY A 61 TYR A 66 1 N GLY A 61 O ALA A 323 SHEET 1 C 2 TRP A 352 ASN A 353 0 SHEET 2 C 2 SER A 356 LEU A 357 -1 O SER A 356 N ASN A 353 SHEET 1 D 2 VAL B 58 LEU B 59 0 SHEET 2 D 2 THR B 345 LEU B 346 1 O LEU B 346 N VAL B 58 SHEET 1 E 9 GLY B 61 TYR B 66 0 SHEET 2 E 9 ILE B 89 ARG B 96 1 O GLY B 91 N GLY B 64 SHEET 3 E 9 ILE B 125 HIS B 131 1 O GLN B 127 N CYS B 92 SHEET 4 E 9 VAL B 186 ARG B 189 1 O ARG B 189 N ILE B 128 SHEET 5 E 9 LEU B 237 TYR B 241 1 O ILE B 238 N PHE B 188 SHEET 6 E 9 ILE B 262 TYR B 268 1 O ILE B 262 N TYR B 241 SHEET 7 E 9 PHE B 288 GLY B 294 1 O GLU B 292 N ALA B 267 SHEET 8 E 9 THR B 318 ALA B 323 1 O ILE B 319 N PHE B 288 SHEET 9 E 9 GLY B 61 TYR B 66 1 N PHE B 63 O ALA B 323 SHEET 1 F 2 TRP B 352 ASN B 353 0 SHEET 2 F 2 SER B 356 LEU B 357 -1 O SER B 356 N ASN B 353 SSBOND 1 CYS A 92 CYS A 112 1555 1555 2.15 SSBOND 2 CYS B 92 CYS B 112 1555 1555 2.15 SITE 1 AC1 8 MET A 117 SER A 118 LYS A 121 ASN A 122 SITE 2 AC1 8 SER B 215 LYS B 218 GLN B 219 LYS B 222 SITE 1 AC2 2 HIS B 368 HIS B 370 SITE 1 AC3 2 HIS B 369 HIS B 370 CRYST1 57.728 69.619 72.505 90.00 91.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017322 0.000000 0.000330 0.00000 SCALE2 0.000000 0.014364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013795 0.00000