HEADER PROTEIN BINDING 23-FEB-08 3CC0 TITLE THE DVL2 PDZ DOMAIN IN COMPLEX WITH THE N3 INHIBITORY PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISHEVELLED-2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PDZ DOMAIN (UNP RESIDUES 264-354); COMPND 5 SYNONYM: SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-2, DSH COMPND 6 HOMOLOG 2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DVL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PDZ DOMAIN, PHAGE DERIVED HIGH AFFINITY LIGAND, DEVELOPMENTAL KEYWDS 2 PROTEIN, PHOSPHOPROTEIN, WNT SIGNALING PATHWAY, SIGNALING PROTEIN, KEYWDS 3 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.A.APPLETON,C.WIESMANN REVDAT 7 30-AUG-23 3CC0 1 REMARK REVDAT 6 20-OCT-21 3CC0 1 SEQADV REVDAT 5 25-OCT-17 3CC0 1 REMARK REVDAT 4 13-JUL-11 3CC0 1 VERSN REVDAT 3 31-MAR-09 3CC0 1 JRNL REVDAT 2 17-MAR-09 3CC0 1 JRNL REVDAT 1 03-MAR-09 3CC0 0 JRNL AUTH Y.ZHANG,B.A.APPLETON,C.WIESMANN,T.LAU,M.COSTA,R.N.HANNOUSH, JRNL AUTH 2 S.S.SIDHU JRNL TITL INHIBITION OF WNT SIGNALING BY DISHEVELLED PDZ PEPTIDES JRNL REF NAT.CHEM.BIOL. V. 5 217 2009 JRNL REFN ISSN 1552-4450 JRNL PMID 19252499 JRNL DOI 10.1038/NCHEMBIO.152 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1348 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1478 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2330 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1531 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3142 ; 1.458 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3769 ; 0.878 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;37.951 ;25.670 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;13.040 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2584 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 412 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 418 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1558 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1122 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1282 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 137 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1939 ; 3.590 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 640 ; 0.730 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2414 ; 4.174 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 920 ; 3.966 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 727 ; 5.302 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 356 REMARK 3 RESIDUE RANGE : B 359 B 367 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5904 -17.6025 8.5146 REMARK 3 T TENSOR REMARK 3 T11: -0.0865 T22: -0.0435 REMARK 3 T33: -0.0867 T12: -0.0181 REMARK 3 T13: -0.0144 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.9242 L22: 1.9854 REMARK 3 L33: 1.6897 L12: -0.8088 REMARK 3 L13: 0.3853 L23: -0.3050 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -0.0573 S13: -0.1992 REMARK 3 S21: -0.0390 S22: 0.0575 S23: 0.1511 REMARK 3 S31: 0.0518 S32: -0.1730 S33: -0.1153 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 260 B 355 REMARK 3 RESIDUE RANGE : C 358 C 367 REMARK 3 ORIGIN FOR THE GROUP (A): 40.3420 -20.2295 9.3157 REMARK 3 T TENSOR REMARK 3 T11: -0.0635 T22: -0.0094 REMARK 3 T33: -0.0346 T12: 0.0152 REMARK 3 T13: -0.0325 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.9033 L22: 1.6679 REMARK 3 L33: 0.9646 L12: 0.1924 REMARK 3 L13: -0.3087 L23: -0.2252 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.1799 S13: -0.0912 REMARK 3 S21: -0.0326 S22: -0.0008 S23: -0.0665 REMARK 3 S31: 0.0717 S32: 0.0253 S33: -0.0468 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 264 C 354 REMARK 3 RESIDUE RANGE : A 357 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1227 4.4814 8.5129 REMARK 3 T TENSOR REMARK 3 T11: -0.0318 T22: -0.0343 REMARK 3 T33: -0.1097 T12: -0.0118 REMARK 3 T13: 0.0001 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 5.3689 L22: 4.5568 REMARK 3 L33: 1.5426 L12: 0.2768 REMARK 3 L13: -1.5093 L23: -0.8926 REMARK 3 S TENSOR REMARK 3 S11: 0.1496 S12: 0.1167 S13: 0.1989 REMARK 3 S21: 0.1832 S22: -0.1533 S23: 0.0297 REMARK 3 S31: -0.1601 S32: 0.1248 S33: 0.0037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26928 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CBX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM CITRATE TRIBASIC, 0.1 M REMARK 280 BIS-TRIS PROPANE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.06533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.03267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.54900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.51633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 142.58167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 ASN B 276 REMARK 465 ASP B 322 REMARK 465 GLY B 356 REMARK 465 GLY B 357 REMARK 465 GLY B 358 REMARK 465 GLY C 260 REMARK 465 SER C 261 REMARK 465 HIS C 262 REMARK 465 MET C 263 REMARK 465 ASN C 276 REMARK 465 PRO C 344 REMARK 465 GLY C 345 REMARK 465 GLY C 355 REMARK 465 GLY C 356 REMARK 465 GLY C 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 338 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 343 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 315 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 321 -116.00 52.73 REMARK 500 TRP A 363 148.08 -170.13 REMARK 500 HIS B 262 -10.64 -142.57 REMARK 500 ASN C 321 -114.34 49.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CBX RELATED DB: PDB REMARK 900 RELATED ID: 3CBY RELATED DB: PDB REMARK 900 RELATED ID: 3CBZ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PEPTIDE LIGAND WAS FUSED TO THE C TERMINUS OF THE LINKER DBREF 3CC0 A 264 354 UNP O14641 DVL2_HUMAN 264 354 DBREF 3CC0 B 264 354 UNP O14641 DVL2_HUMAN 264 354 DBREF 3CC0 C 264 354 UNP O14641 DVL2_HUMAN 264 354 SEQADV 3CC0 GLY A 260 UNP O14641 EXPRESSION TAG SEQADV 3CC0 SER A 261 UNP O14641 EXPRESSION TAG SEQADV 3CC0 HIS A 262 UNP O14641 EXPRESSION TAG SEQADV 3CC0 MET A 263 UNP O14641 EXPRESSION TAG SEQADV 3CC0 SER A 354 UNP O14641 CYS 354 ENGINEERED MUTATION SEQADV 3CC0 GLY A 355 UNP O14641 LINKER SEQADV 3CC0 GLY A 356 UNP O14641 LINKER SEQADV 3CC0 GLY A 357 UNP O14641 LINKER SEQADV 3CC0 GLY A 358 UNP O14641 SEE REMARK 999 SEQADV 3CC0 GLU A 359 UNP O14641 SEE REMARK 999 SEQADV 3CC0 ILE A 360 UNP O14641 SEE REMARK 999 SEQADV 3CC0 VAL A 361 UNP O14641 SEE REMARK 999 SEQADV 3CC0 LEU A 362 UNP O14641 SEE REMARK 999 SEQADV 3CC0 TRP A 363 UNP O14641 SEE REMARK 999 SEQADV 3CC0 SER A 364 UNP O14641 SEE REMARK 999 SEQADV 3CC0 ASP A 365 UNP O14641 SEE REMARK 999 SEQADV 3CC0 ILE A 366 UNP O14641 SEE REMARK 999 SEQADV 3CC0 PRO A 367 UNP O14641 SEE REMARK 999 SEQADV 3CC0 GLY B 260 UNP O14641 EXPRESSION TAG SEQADV 3CC0 SER B 261 UNP O14641 EXPRESSION TAG SEQADV 3CC0 HIS B 262 UNP O14641 EXPRESSION TAG SEQADV 3CC0 MET B 263 UNP O14641 EXPRESSION TAG SEQADV 3CC0 SER B 354 UNP O14641 CYS 354 ENGINEERED MUTATION SEQADV 3CC0 GLY B 355 UNP O14641 LINKER SEQADV 3CC0 GLY B 356 UNP O14641 LINKER SEQADV 3CC0 GLY B 357 UNP O14641 LINKER SEQADV 3CC0 GLY B 358 UNP O14641 SEE REMARK 999 SEQADV 3CC0 GLU B 359 UNP O14641 SEE REMARK 999 SEQADV 3CC0 ILE B 360 UNP O14641 SEE REMARK 999 SEQADV 3CC0 VAL B 361 UNP O14641 SEE REMARK 999 SEQADV 3CC0 LEU B 362 UNP O14641 SEE REMARK 999 SEQADV 3CC0 TRP B 363 UNP O14641 SEE REMARK 999 SEQADV 3CC0 SER B 364 UNP O14641 SEE REMARK 999 SEQADV 3CC0 ASP B 365 UNP O14641 SEE REMARK 999 SEQADV 3CC0 ILE B 366 UNP O14641 SEE REMARK 999 SEQADV 3CC0 PRO B 367 UNP O14641 SEE REMARK 999 SEQADV 3CC0 GLY C 260 UNP O14641 EXPRESSION TAG SEQADV 3CC0 SER C 261 UNP O14641 EXPRESSION TAG SEQADV 3CC0 HIS C 262 UNP O14641 EXPRESSION TAG SEQADV 3CC0 MET C 263 UNP O14641 EXPRESSION TAG SEQADV 3CC0 SER C 354 UNP O14641 CYS 354 ENGINEERED MUTATION SEQADV 3CC0 GLY C 355 UNP O14641 LINKER SEQADV 3CC0 GLY C 356 UNP O14641 LINKER SEQADV 3CC0 GLY C 357 UNP O14641 LINKER SEQADV 3CC0 GLY C 358 UNP O14641 SEE REMARK 999 SEQADV 3CC0 GLU C 359 UNP O14641 SEE REMARK 999 SEQADV 3CC0 ILE C 360 UNP O14641 SEE REMARK 999 SEQADV 3CC0 VAL C 361 UNP O14641 SEE REMARK 999 SEQADV 3CC0 LEU C 362 UNP O14641 SEE REMARK 999 SEQADV 3CC0 TRP C 363 UNP O14641 SEE REMARK 999 SEQADV 3CC0 SER C 364 UNP O14641 SEE REMARK 999 SEQADV 3CC0 ASP C 365 UNP O14641 SEE REMARK 999 SEQADV 3CC0 ILE C 366 UNP O14641 SEE REMARK 999 SEQADV 3CC0 PRO C 367 UNP O14641 SEE REMARK 999 SEQRES 1 A 108 GLY SER HIS MET ASN ILE ILE THR VAL THR LEU ASN MET SEQRES 2 A 108 GLU LYS TYR ASN PHE LEU GLY ILE SER ILE VAL GLY GLN SEQRES 3 A 108 SER ASN GLU ARG GLY ASP GLY GLY ILE TYR ILE GLY SER SEQRES 4 A 108 ILE MET LYS GLY GLY ALA VAL ALA ALA ASP GLY ARG ILE SEQRES 5 A 108 GLU PRO GLY ASP MET LEU LEU GLN VAL ASN ASP MET ASN SEQRES 6 A 108 PHE GLU ASN MET SER ASN ASP ASP ALA VAL ARG VAL LEU SEQRES 7 A 108 ARG ASP ILE VAL HIS LYS PRO GLY PRO ILE VAL LEU THR SEQRES 8 A 108 VAL ALA LYS SER GLY GLY GLY GLY GLU ILE VAL LEU TRP SEQRES 9 A 108 SER ASP ILE PRO SEQRES 1 B 108 GLY SER HIS MET ASN ILE ILE THR VAL THR LEU ASN MET SEQRES 2 B 108 GLU LYS TYR ASN PHE LEU GLY ILE SER ILE VAL GLY GLN SEQRES 3 B 108 SER ASN GLU ARG GLY ASP GLY GLY ILE TYR ILE GLY SER SEQRES 4 B 108 ILE MET LYS GLY GLY ALA VAL ALA ALA ASP GLY ARG ILE SEQRES 5 B 108 GLU PRO GLY ASP MET LEU LEU GLN VAL ASN ASP MET ASN SEQRES 6 B 108 PHE GLU ASN MET SER ASN ASP ASP ALA VAL ARG VAL LEU SEQRES 7 B 108 ARG ASP ILE VAL HIS LYS PRO GLY PRO ILE VAL LEU THR SEQRES 8 B 108 VAL ALA LYS SER GLY GLY GLY GLY GLU ILE VAL LEU TRP SEQRES 9 B 108 SER ASP ILE PRO SEQRES 1 C 108 GLY SER HIS MET ASN ILE ILE THR VAL THR LEU ASN MET SEQRES 2 C 108 GLU LYS TYR ASN PHE LEU GLY ILE SER ILE VAL GLY GLN SEQRES 3 C 108 SER ASN GLU ARG GLY ASP GLY GLY ILE TYR ILE GLY SER SEQRES 4 C 108 ILE MET LYS GLY GLY ALA VAL ALA ALA ASP GLY ARG ILE SEQRES 5 C 108 GLU PRO GLY ASP MET LEU LEU GLN VAL ASN ASP MET ASN SEQRES 6 C 108 PHE GLU ASN MET SER ASN ASP ASP ALA VAL ARG VAL LEU SEQRES 7 C 108 ARG ASP ILE VAL HIS LYS PRO GLY PRO ILE VAL LEU THR SEQRES 8 C 108 VAL ALA LYS SER GLY GLY GLY GLY GLU ILE VAL LEU TRP SEQRES 9 C 108 SER ASP ILE PRO FORMUL 4 HOH *157(H2 O) HELIX 1 1 GLY A 303 GLY A 309 1 7 HELIX 2 2 SER A 329 VAL A 341 1 13 HELIX 3 3 GLY B 303 GLY B 309 1 7 HELIX 4 4 SER B 329 VAL B 341 1 13 HELIX 5 5 GLY C 303 GLY C 309 1 7 HELIX 6 6 SER C 329 HIS C 342 1 14 SHEET 1 A 4 ILE A 265 LEU A 270 0 SHEET 2 A 4 ILE A 347 ALA A 352 -1 O ILE A 347 N LEU A 270 SHEET 3 A 4 MET A 316 VAL A 320 -1 N LEU A 318 O THR A 350 SHEET 4 A 4 MET A 323 ASN A 324 -1 O MET A 323 N VAL A 320 SHEET 1 B 3 GLY A 293 ILE A 299 0 SHEET 2 B 3 ILE A 280 GLN A 285 -1 N SER A 281 O GLY A 297 SHEET 3 B 3 ILE B 360 SER B 364 -1 O ILE B 360 N GLY A 284 SHEET 1 C 3 GLU A 359 SER A 364 0 SHEET 2 C 3 ILE C 280 GLN C 285 -1 O GLY C 284 N ILE A 360 SHEET 3 C 3 GLY C 293 ILE C 299 -1 O GLY C 293 N GLN C 285 SHEET 1 D 3 ILE B 265 LEU B 270 0 SHEET 2 D 3 ILE B 347 ALA B 352 -1 O LEU B 349 N VAL B 268 SHEET 3 D 3 MET B 316 VAL B 320 -1 N LEU B 318 O THR B 350 SHEET 1 E 3 GLY B 293 ILE B 299 0 SHEET 2 E 3 ILE B 280 GLN B 285 -1 N SER B 281 O GLY B 297 SHEET 3 E 3 GLU C 359 SER C 364 -1 O ILE C 360 N GLY B 284 SHEET 1 F 4 ILE C 265 LEU C 270 0 SHEET 2 F 4 ILE C 347 ALA C 352 -1 O LEU C 349 N VAL C 268 SHEET 3 F 4 MET C 316 VAL C 320 -1 N LEU C 318 O THR C 350 SHEET 4 F 4 MET C 323 ASN C 324 -1 O MET C 323 N VAL C 320 CRYST1 52.617 52.617 171.098 90.00 90.00 120.00 P 65 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019005 0.010973 0.000000 0.00000 SCALE2 0.000000 0.021945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005845 0.00000