HEADER TRANSFERASE 25-FEB-08 3CCF TITLE CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE (YP_321342.1) FROM TITLE 2 ANABAENA VARIABILIS ATCC 29413 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.144; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA VARIABILIS ATCC 29413; SOURCE 3 ORGANISM_TAXID: 240292; SOURCE 4 STRAIN: PCC 7937; SOURCE 5 GENE: YP_321342.1, AVA_0823; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_321342.1, PUTATIVE METHYLTRANSFERASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3CCF 1 REMARK SEQADV REVDAT 5 24-JUL-19 3CCF 1 REMARK LINK REVDAT 4 25-OCT-17 3CCF 1 REMARK REVDAT 3 13-JUL-11 3CCF 1 VERSN REVDAT 2 24-FEB-09 3CCF 1 VERSN REVDAT 1 11-MAR-08 3CCF 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE JRNL TITL 2 (YP_321342.1) FROM ANABAENA VARIABILIS ATCC 29413 AT 1.90 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2024 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2668 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : -2.40000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.029 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3896 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2555 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5304 ; 1.704 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6226 ; 1.510 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ; 4.164 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;33.601 ;24.709 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 610 ;12.570 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 577 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4426 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 817 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2395 ; 2.034 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 978 ; 0.595 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3828 ; 3.455 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1501 ; 5.949 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1472 ; 8.654 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 28 A 258 6 REMARK 3 1 B 28 B 258 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2956 ; 0.570 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2956 ; 3.500 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0470 21.0080 22.4920 REMARK 3 T TENSOR REMARK 3 T11: -0.0946 T22: 0.0042 REMARK 3 T33: -0.1010 T12: 0.0113 REMARK 3 T13: 0.0215 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0400 L22: 0.8010 REMARK 3 L33: 1.7152 L12: 0.1694 REMARK 3 L13: -0.2050 L23: -0.6336 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0300 S13: -0.0343 REMARK 3 S21: -0.0202 S22: 0.0275 S23: 0.1127 REMARK 3 S31: -0.0127 S32: -0.1569 S33: -0.0316 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8330 41.2490 12.8110 REMARK 3 T TENSOR REMARK 3 T11: -0.1126 T22: -0.0187 REMARK 3 T33: -0.0384 T12: 0.0027 REMARK 3 T13: -0.0021 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.9339 L22: 0.5703 REMARK 3 L33: 2.0329 L12: 0.1866 REMARK 3 L13: -1.0316 L23: -0.1606 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: -0.2448 S13: 0.2378 REMARK 3 S21: 0.0347 S22: 0.0004 S23: -0.0678 REMARK 3 S31: -0.1060 S32: 0.1202 S33: -0.0737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. BENZOIC ACID (BEZ) HAS BEEN MODELED BASED ON THE DENSITY. THIS REMARK 3 ASSIGNMENT IS SUPPORTED BY A SALT LINK WITH ARG 251. HOWEVER, REMARK 3 IT COULD BE SOME OTHER COMPOUND. REMARK 4 REMARK 4 3CCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97980, 0.97968 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40355 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.921 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 1.0M LICL, 20.0% PEG 6000, REMARK 280 0.1M MES PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.41500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.41500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE SIZE EXCLUSION CHROMATOGRAPHY WITH REMARK 300 STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION BUT CRYSTAL PACKING REMARK 300 ANALYSIS DOES NOT REVEAL ANY INTERFACES THAT ARE LIKELY STABLE AS A REMARK 300 DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 ASN A 9 REMARK 465 PHE A 10 REMARK 465 TRP A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 13 REMARK 465 THR A 14 REMARK 465 LEU A 15 REMARK 465 TYR A 16 REMARK 465 GLN A 17 REMARK 465 ASP A 18 REMARK 465 LYS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 GLN A 260 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 LEU B 4 REMARK 465 GLY B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 8 REMARK 465 ASN B 9 REMARK 465 PHE B 10 REMARK 465 TRP B 11 REMARK 465 ASP B 12 REMARK 465 ALA B 13 REMARK 465 THR B 14 REMARK 465 LEU B 15 REMARK 465 TYR B 16 REMARK 465 GLN B 17 REMARK 465 ASP B 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 22 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 TYR A 26 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 97 CD CE NZ REMARK 470 LYS A 238 CD CE NZ REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 HIS B 20 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 21 OG REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 GLN B 78 CG CD OE1 NE2 REMARK 470 ARG B 94 CD NE CZ NH1 NH2 REMARK 470 ASP B 96 CG OD1 OD2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE2 PHE A 41 OE1 GLU A 62 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 248 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 92 14.85 -143.75 REMARK 500 GLU A 113 65.55 -115.60 REMARK 500 PRO B 81 -8.97 -59.66 REMARK 500 ASN B 92 25.53 -142.72 REMARK 500 GLU B 113 63.85 -114.31 REMARK 500 GLU B 199 24.98 83.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ B 261 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 383249 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3CCF A 1 260 UNP Q3MEY9 Q3MEY9_ANAVT 1 260 DBREF 3CCF B 1 260 UNP Q3MEY9 Q3MEY9_ANAVT 1 260 SEQADV 3CCF MSE A -18 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF GLY A -17 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF SER A -16 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF ASP A -15 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF LYS A -14 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF ILE A -13 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS A -12 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS A -11 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS A -10 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS A -9 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS A -8 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS A -7 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF GLU A -6 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF ASN A -5 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF LEU A -4 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF TYR A -3 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF PHE A -2 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF GLN A -1 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF GLY A 0 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF MSE B -18 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF GLY B -17 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF SER B -16 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF ASP B -15 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF LYS B -14 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF ILE B -13 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS B -12 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS B -11 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS B -10 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS B -9 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS B -8 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF HIS B -7 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF GLU B -6 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF ASN B -5 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF LEU B -4 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF TYR B -3 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF PHE B -2 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF GLN B -1 UNP Q3MEY9 EXPRESSION TAG SEQADV 3CCF GLY B 0 UNP Q3MEY9 EXPRESSION TAG SEQRES 1 A 279 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 279 ASN LEU TYR PHE GLN GLY MSE THR ASN LEU GLY THR ALA SEQRES 3 A 279 LYS ASN PHE TRP ASP ALA THR LEU TYR GLN ASP LYS HIS SEQRES 4 A 279 SER PHE VAL TRP GLN TYR GLY GLU ASP LEU LEU GLN LEU SEQRES 5 A 279 LEU ASN PRO GLN PRO GLY GLU PHE ILE LEU ASP LEU GLY SEQRES 6 A 279 CYS GLY THR GLY GLN LEU THR GLU LYS ILE ALA GLN SER SEQRES 7 A 279 GLY ALA GLU VAL LEU GLY THR ASP ASN ALA ALA THR MSE SEQRES 8 A 279 ILE GLU LYS ALA ARG GLN ASN TYR PRO HIS LEU HIS PHE SEQRES 9 A 279 ASP VAL ALA ASP ALA ARG ASN PHE ARG VAL ASP LYS PRO SEQRES 10 A 279 LEU ASP ALA VAL PHE SER ASN ALA MSE LEU HIS TRP VAL SEQRES 11 A 279 LYS GLU PRO GLU ALA ALA ILE ALA SER ILE HIS GLN ALA SEQRES 12 A 279 LEU LYS SER GLY GLY ARG PHE VAL ALA GLU PHE GLY GLY SEQRES 13 A 279 LYS GLY ASN ILE LYS TYR ILE LEU GLU ALA LEU TYR ASN SEQRES 14 A 279 ALA LEU GLU THR LEU GLY ILE HIS ASN PRO GLN ALA LEU SEQRES 15 A 279 ASN PRO TRP TYR PHE PRO SER ILE GLY GLU TYR VAL ASN SEQRES 16 A 279 ILE LEU GLU LYS GLN GLY PHE ASP VAL THR TYR ALA ALA SEQRES 17 A 279 LEU PHE ASN ARG PRO THR THR LEU ALA GLU GLY GLU PHE SEQRES 18 A 279 GLY MSE ALA ASN TRP ILE GLN MSE PHE ALA SER ALA PHE SEQRES 19 A 279 LEU VAL GLY LEU THR PRO ASP GLN GLN VAL GLN LEU ILE SEQRES 20 A 279 ARG LYS VAL GLU ALA THR LEU GLN ASP LYS LEU TYR HIS SEQRES 21 A 279 GLN GLU SER TRP THR ALA ASP TYR ARG ARG ILE ARG ILE SEQRES 22 A 279 VAL SER ILE LYS ALA GLN SEQRES 1 B 279 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 279 ASN LEU TYR PHE GLN GLY MSE THR ASN LEU GLY THR ALA SEQRES 3 B 279 LYS ASN PHE TRP ASP ALA THR LEU TYR GLN ASP LYS HIS SEQRES 4 B 279 SER PHE VAL TRP GLN TYR GLY GLU ASP LEU LEU GLN LEU SEQRES 5 B 279 LEU ASN PRO GLN PRO GLY GLU PHE ILE LEU ASP LEU GLY SEQRES 6 B 279 CYS GLY THR GLY GLN LEU THR GLU LYS ILE ALA GLN SER SEQRES 7 B 279 GLY ALA GLU VAL LEU GLY THR ASP ASN ALA ALA THR MSE SEQRES 8 B 279 ILE GLU LYS ALA ARG GLN ASN TYR PRO HIS LEU HIS PHE SEQRES 9 B 279 ASP VAL ALA ASP ALA ARG ASN PHE ARG VAL ASP LYS PRO SEQRES 10 B 279 LEU ASP ALA VAL PHE SER ASN ALA MSE LEU HIS TRP VAL SEQRES 11 B 279 LYS GLU PRO GLU ALA ALA ILE ALA SER ILE HIS GLN ALA SEQRES 12 B 279 LEU LYS SER GLY GLY ARG PHE VAL ALA GLU PHE GLY GLY SEQRES 13 B 279 LYS GLY ASN ILE LYS TYR ILE LEU GLU ALA LEU TYR ASN SEQRES 14 B 279 ALA LEU GLU THR LEU GLY ILE HIS ASN PRO GLN ALA LEU SEQRES 15 B 279 ASN PRO TRP TYR PHE PRO SER ILE GLY GLU TYR VAL ASN SEQRES 16 B 279 ILE LEU GLU LYS GLN GLY PHE ASP VAL THR TYR ALA ALA SEQRES 17 B 279 LEU PHE ASN ARG PRO THR THR LEU ALA GLU GLY GLU PHE SEQRES 18 B 279 GLY MSE ALA ASN TRP ILE GLN MSE PHE ALA SER ALA PHE SEQRES 19 B 279 LEU VAL GLY LEU THR PRO ASP GLN GLN VAL GLN LEU ILE SEQRES 20 B 279 ARG LYS VAL GLU ALA THR LEU GLN ASP LYS LEU TYR HIS SEQRES 21 B 279 GLN GLU SER TRP THR ALA ASP TYR ARG ARG ILE ARG ILE SEQRES 22 B 279 VAL SER ILE LYS ALA GLN MODRES 3CCF MSE A 72 MET SELENOMETHIONINE MODRES 3CCF MSE A 107 MET SELENOMETHIONINE MODRES 3CCF MSE A 204 MET SELENOMETHIONINE MODRES 3CCF MSE A 210 MET SELENOMETHIONINE MODRES 3CCF MSE B 72 MET SELENOMETHIONINE MODRES 3CCF MSE B 107 MET SELENOMETHIONINE MODRES 3CCF MSE B 204 MET SELENOMETHIONINE MODRES 3CCF MSE B 210 MET SELENOMETHIONINE HET MSE A 72 8 HET MSE A 107 8 HET MSE A 204 8 HET MSE A 210 8 HET MSE B 72 8 HET MSE B 107 8 HET MSE B 204 8 HET MSE B 210 8 HET BEZ A 261 9 HET BEZ B 261 9 HETNAM MSE SELENOMETHIONINE HETNAM BEZ BENZOIC ACID FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 BEZ 2(C7 H6 O2) FORMUL 5 HOH *393(H2 O) HELIX 1 1 GLU A 28 ASN A 35 1 8 HELIX 2 2 GLY A 50 SER A 59 1 10 HELIX 3 3 ALA A 69 TYR A 80 1 12 HELIX 4 4 MSE A 107 VAL A 111 5 5 HELIX 5 5 GLU A 113 ALA A 124 1 12 HELIX 6 6 ILE A 141 GLY A 156 1 16 HELIX 7 7 ASN A 159 ASN A 164 5 6 HELIX 8 8 SER A 170 GLY A 182 1 13 HELIX 9 9 GLU A 199 GLU A 201 5 3 HELIX 10 10 PHE A 202 ALA A 212 1 11 HELIX 11 11 ALA A 212 VAL A 217 1 6 HELIX 12 12 THR A 220 LEU A 239 1 20 HELIX 13 13 GLY B 27 ASN B 35 1 9 HELIX 14 14 GLY B 50 SER B 59 1 10 HELIX 15 15 ALA B 69 TYR B 80 1 12 HELIX 16 16 MSE B 107 VAL B 111 5 5 HELIX 17 17 GLU B 113 ALA B 124 1 12 HELIX 18 18 ILE B 141 LEU B 155 1 15 HELIX 19 19 ASN B 159 ASN B 164 5 6 HELIX 20 20 SER B 170 GLY B 182 1 13 HELIX 21 21 GLU B 199 GLU B 201 5 3 HELIX 22 22 PHE B 202 ALA B 212 1 11 HELIX 23 23 SER B 213 LEU B 216 5 4 HELIX 24 24 THR B 220 LEU B 239 1 20 SHEET 1 A14 PHE A 85 VAL A 87 0 SHEET 2 A14 GLU A 62 ASP A 67 1 N GLY A 65 O ASP A 86 SHEET 3 A14 PHE A 41 LEU A 45 1 N ILE A 42 O GLU A 62 SHEET 4 A14 LEU A 99 ASN A 105 1 O ASP A 100 N PHE A 41 SHEET 5 A14 LEU A 125 GLY A 136 1 O VAL A 132 N VAL A 102 SHEET 6 A14 ARG A 250 LYS A 258 -1 O LYS A 258 N GLY A 129 SHEET 7 A14 PHE A 183 ASN A 192 -1 N ASP A 184 O ILE A 257 SHEET 8 A14 PHE B 183 THR B 196 -1 O ALA B 188 N ALA A 188 SHEET 9 A14 SER B 244 LYS B 258 -1 O TYR B 249 N ARG B 193 SHEET 10 A14 LEU B 125 GLY B 136 -1 N GLY B 129 O LYS B 258 SHEET 11 A14 LEU B 99 ASN B 105 1 N VAL B 102 O ARG B 130 SHEET 12 A14 PHE B 41 LEU B 45 1 N PHE B 41 O ASP B 100 SHEET 13 A14 GLU B 62 ASP B 67 1 O LEU B 64 N ASP B 44 SHEET 14 A14 PHE B 85 VAL B 87 1 O ASP B 86 N GLY B 65 SHEET 1 B10 PHE A 85 VAL A 87 0 SHEET 2 B10 GLU A 62 ASP A 67 1 N GLY A 65 O ASP A 86 SHEET 3 B10 PHE A 41 LEU A 45 1 N ILE A 42 O GLU A 62 SHEET 4 B10 LEU A 99 ASN A 105 1 O ASP A 100 N PHE A 41 SHEET 5 B10 LEU A 125 GLY A 136 1 O VAL A 132 N VAL A 102 SHEET 6 B10 ARG A 250 LYS A 258 -1 O LYS A 258 N GLY A 129 SHEET 7 B10 PHE A 183 ASN A 192 -1 N ASP A 184 O ILE A 257 SHEET 8 B10 PHE B 183 THR B 196 -1 O ALA B 188 N ALA A 188 SHEET 9 B10 SER B 244 LYS B 258 -1 O TYR B 249 N ARG B 193 SHEET 10 B10 TYR B 240 HIS B 241 -1 N HIS B 241 O SER B 244 SHEET 1 C 3 THR A 195 THR A 196 0 SHEET 2 C 3 SER A 244 ALA A 247 -1 O ALA A 247 N THR A 195 SHEET 3 C 3 TYR A 240 HIS A 241 -1 N HIS A 241 O SER A 244 LINK C THR A 71 N MSE A 72 1555 1555 1.32 LINK C MSE A 72 N ILE A 73 1555 1555 1.33 LINK C ALA A 106 N MSE A 107 1555 1555 1.32 LINK C MSE A 107 N LEU A 108 1555 1555 1.33 LINK C GLY A 203 N MSE A 204 1555 1555 1.32 LINK C MSE A 204 N ALA A 205 1555 1555 1.32 LINK C GLN A 209 N MSE A 210 1555 1555 1.30 LINK C MSE A 210 N PHE A 211 1555 1555 1.33 LINK C THR B 71 N MSE B 72 1555 1555 1.32 LINK C MSE B 72 N ILE B 73 1555 1555 1.32 LINK C ALA B 106 N MSE B 107 1555 1555 1.32 LINK C MSE B 107 N LEU B 108 1555 1555 1.32 LINK C GLY B 203 N MSE B 204 1555 1555 1.33 LINK C MSE B 204 N ALA B 205 1555 1555 1.32 LINK C GLN B 209 N MSE B 210 1555 1555 1.31 LINK C MSE B 210 N PHE B 211 1555 1555 1.32 SITE 1 AC1 6 HIS A 109 ASN A 140 TRP A 166 PHE A 211 SITE 2 AC1 6 TYR A 249 ARG A 251 SITE 1 AC2 6 ASN B 140 TRP B 166 TRP B 207 PHE B 211 SITE 2 AC2 6 TYR B 249 ARG B 251 CRYST1 56.830 67.230 131.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007610 0.00000