data_3CCO # _entry.id 3CCO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CCO pdb_00003cco 10.2210/pdb3cco/pdb NDB DD0091 ? ? RCSB RCSB046616 ? ? WWPDB D_1000046616 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3CDM _pdbx_database_related.details 'Human Telomeric Sequence bound to same ligand' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CCO _pdbx_database_status.recvd_initial_deposition_date 2008-02-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Parkinson, G.N.' 1 'Neidle, S.' 2 # _citation.id primary _citation.title ;Topology conservation and loop flexibility in quadruplex-drug recognition: crystal structures of inter- and intramolecular telomeric DNA quadruplex-drug complexes ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 381 _citation.page_first 1145 _citation.page_last 1156 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18619463 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.06.022 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parkinson, G.N.' 1 ? primary 'Cuenca, F.' 2 ? primary 'Neidle, S.' 3 ? # _cell.entry_id 3CCO _cell.length_a 61.350 _cell.length_b 61.350 _cell.length_c 43.630 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CCO _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3') ; 3773.462 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 4 non-polymer syn '2,7-bis[3-(dimethylamino)propyl]-4,9-bis[(3-hydroxypropyl)amino]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone' 582.691 3 ? ? ? ? 5 water nat water 18.015 28 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TELOMERE REPEAT SEQUENCE' # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TAGGGTTAGGGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 DT n 1 8 DA n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'THIS SEQUENCE OCCURS NATURALLY IN HUMANS' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3CCO _struct_ref.pdbx_db_accession 3CCO _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TAGGGTTAGGGT _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CCO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3CCO _struct_ref_seq.db_align_beg 1001 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1012 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1001 _struct_ref_seq.pdbx_auth_seq_align_end 1012 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NII non-polymer . '2,7-bis[3-(dimethylamino)propyl]-4,9-bis[(3-hydroxypropyl)amino]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone' ? 'C30 H42 N6 O6' 582.691 # _exptl.entry_id 3CCO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_percent_sol 60.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '300mM sodium chloride, 50mM sodium cacodylate pH 6.5, 30% v/v MPD, VAPOR DIFFUSION, HANGING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium chloride' ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 MPD ? ? ? 1 4 1 HOH ? ? ? 1 5 2 'sodium chloride' ? ? ? 1 6 2 'sodium cacodylate' ? ? ? 1 7 2 MPD ? ? ? 1 8 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-10-07 _diffrn_detector.details MONOCHROMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9785 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9785 # _reflns.entry_id 3CCO _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.97 _reflns.d_resolution_low 22.69 _reflns.number_all 3739 _reflns.number_obs 3697 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.3 _reflns.B_iso_Wilson_estimate 33 _reflns.pdbx_redundancy 10 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.97 _reflns_shell.d_res_low 2.04 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.134 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.8 _reflns_shell.pdbx_redundancy 10.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 359 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3CCO _refine.ls_number_reflns_obs 2520 _refine.ls_number_reflns_all 2520 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 98.80 _refine.ls_R_factor_obs 0.25664 _refine.ls_R_factor_all 0.25664 _refine.ls_R_factor_R_work 0.25436 _refine.ls_R_factor_R_free 0.30275 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 123 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.917 _refine.correlation_coeff_Fo_to_Fc_free 0.894 _refine.B_iso_mean 21.260 _refine.aniso_B[1][1] 1.39 _refine.aniso_B[2][2] 1.39 _refine.aniso_B[3][3] -2.09 _refine.aniso_B[1][2] 0.70 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1KF1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Overall _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.348 _refine.pdbx_overall_ESU_R_Free 0.263 _refine.overall_SU_ML 0.167 _refine.overall_SU_B 6.344 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 219 _refine_hist.pdbx_number_atoms_ligand 130 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 377 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.021 ? 381 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3.306 3.000 ? 574 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.138 0.200 ? 47 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.019 0.020 ? 190 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.394 0.200 ? 108 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.353 0.200 ? 228 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.318 0.200 ? 15 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.232 0.200 ? 3 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.397 0.200 ? 66 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.179 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.101 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.920 3.000 ? 689 'X-RAY DIFFRACTION' ? r_scangle_it 3.389 4.500 ? 574 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.255 _refine_ls_shell.number_reflns_R_work 178 _refine_ls_shell.R_factor_R_work 0.324 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.567 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 5 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 178 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CCO _struct.title 'Structural adaptation and conservation in quadruplex-drug recognition' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CCO _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'QUADRUPLEX, DNA, PROPELLER, DIMERIC, HUMAN TELOMERE PARALLEL STRANDED, LIGAND, COMPLEX, naphthalene diimidine' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B NA . NA ? ? ? 1_555 A DG 11 "O4'" ? ? A NA 4 A DG 1011 1_555 ? ? ? ? ? ? ? 2.816 ? ? metalc2 metalc ? ? C K . K ? ? ? 1_555 A DG 4 O6 ? ? A K 30 A DG 1004 1_555 ? ? ? ? ? ? ? 2.937 ? ? metalc3 metalc ? ? C K . K ? ? ? 1_555 A DG 5 O6 ? ? A K 30 A DG 1005 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc4 metalc ? ? C K . K ? ? ? 1_555 A DG 11 O6 ? ? A K 30 A DG 1011 1_555 ? ? ? ? ? ? ? 2.658 ? ? metalc5 metalc ? ? D K . K ? ? ? 1_555 A DG 3 O6 ? ? A K 31 A DG 1003 1_555 ? ? ? ? ? ? ? 2.864 ? ? metalc6 metalc ? ? D K . K ? ? ? 1_555 A DG 9 O6 ? ? A K 31 A DG 1009 1_555 ? ? ? ? ? ? ? 2.963 ? ? metalc7 metalc ? ? E K . K ? ? ? 1_555 A DG 3 O6 ? ? A K 32 A DG 1003 1_555 ? ? ? ? ? ? ? 2.866 ? ? metalc8 metalc ? ? E K . K ? ? ? 1_555 A DG 9 O6 ? ? A K 32 A DG 1009 1_555 ? ? ? ? ? ? ? 2.899 ? ? hydrog1 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DA 8 N7 ? ? A DG 1003 A DA 1008 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog2 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DA 8 N6 ? ? A DG 1003 A DA 1008 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 1003 A DG 1009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 1003 A DG 1009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 1004 A DG 1010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 1004 A DG 1010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 1005 A DG 1011 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 1005 A DG 1011 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 4 ? 4 'BINDING SITE FOR RESIDUE NA A 4' AC2 Software A K 30 ? 5 'BINDING SITE FOR RESIDUE K A 30' AC3 Software A K 31 ? 6 'BINDING SITE FOR RESIDUE K A 31' AC4 Software A K 32 ? 3 'BINDING SITE FOR RESIDUE K A 32' AC5 Software A NII 1 ? 3 'BINDING SITE FOR RESIDUE NII A 1' AC6 Software A NII 2 ? 4 'BINDING SITE FOR RESIDUE NII A 2' AC7 Software A NII 3 ? 1 'BINDING SITE FOR RESIDUE NII A 3' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DG A 11 ? DG A 1011 . ? 1_555 ? 2 AC1 4 HOH I . ? HOH A 1013 . ? 12_564 ? 3 AC1 4 HOH I . ? HOH A 1015 . ? 12_564 ? 4 AC1 4 HOH I . ? HOH A 1020 . ? 1_555 ? 5 AC2 5 K D . ? K A 31 . ? 1_555 ? 6 AC2 5 DG A 4 ? DG A 1004 . ? 12_564 ? 7 AC2 5 DG A 5 ? DG A 1005 . ? 1_555 ? 8 AC2 5 DG A 10 ? DG A 1010 . ? 1_555 ? 9 AC2 5 DG A 11 ? DG A 1011 . ? 1_555 ? 10 AC3 6 K C . ? K A 30 . ? 1_555 ? 11 AC3 6 K E . ? K A 32 . ? 12_564 ? 12 AC3 6 DG A 3 ? DG A 1003 . ? 12_564 ? 13 AC3 6 DG A 4 ? DG A 1004 . ? 12_564 ? 14 AC3 6 DG A 9 ? DG A 1009 . ? 12_564 ? 15 AC3 6 DG A 10 ? DG A 1010 . ? 1_555 ? 16 AC4 3 K D . ? K A 31 . ? 1_555 ? 17 AC4 3 DG A 3 ? DG A 1003 . ? 12_564 ? 18 AC4 3 DG A 9 ? DG A 1009 . ? 1_555 ? 19 AC5 3 DG A 5 ? DG A 1005 . ? 1_555 ? 20 AC5 3 DT A 6 ? DT A 1006 . ? 11_455 ? 21 AC5 3 DG A 11 ? DG A 1011 . ? 1_555 ? 22 AC6 4 NII H . ? NII A 3 . ? 12_565 ? 23 AC6 4 DT A 7 ? DT A 1007 . ? 1_555 ? 24 AC6 4 DG A 9 ? DG A 1009 . ? 4_565 ? 25 AC6 4 HOH I . ? HOH A 1016 . ? 4_565 ? 26 AC7 1 NII G . ? NII A 2 . ? 12_565 ? # _database_PDB_matrix.entry_id 3CCO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3CCO _atom_sites.fract_transf_matrix[1][1] 0.016300 _atom_sites.fract_transf_matrix[1][2] 0.009411 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018822 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022920 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1001 1001 DT T A . n A 1 2 DA 2 1002 1002 DA A A . n A 1 3 DG 3 1003 1003 DG G A . n A 1 4 DG 4 1004 1004 DG G A . n A 1 5 DG 5 1005 1005 DG G A . n A 1 6 DT 6 1006 1006 DT T A . n A 1 7 DT 7 1007 1007 DT T A . n A 1 8 DA 8 1008 1008 DA A A . n A 1 9 DG 9 1009 1009 DG G A . n A 1 10 DG 10 1010 1010 DG G A . n A 1 11 DG 11 1011 1011 DG G A . n A 1 12 DT 12 1012 1012 DT T A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 4 1 NA NA A . C 3 K 1 30 30 K K A . D 3 K 1 31 31 K K A . E 3 K 1 32 32 K K A . F 4 NII 1 1 1 NII P10 A . G 4 NII 1 2 2 NII P10 A . H 4 NII 1 3 3 NII P10 A . I 5 HOH 1 1013 2 HOH HOH A . I 5 HOH 2 1014 3 HOH HOH A . I 5 HOH 3 1015 4 HOH HOH A . I 5 HOH 4 1016 5 HOH HOH A . I 5 HOH 5 1017 6 HOH HOH A . I 5 HOH 6 1018 7 HOH HOH A . I 5 HOH 7 1019 8 HOH HOH A . I 5 HOH 8 1020 9 HOH HOH A . I 5 HOH 9 1021 10 HOH HOH A . I 5 HOH 10 1022 11 HOH HOH A . I 5 HOH 11 1023 12 HOH HOH A . I 5 HOH 12 1024 13 HOH HOH A . I 5 HOH 13 1025 14 HOH HOH A . I 5 HOH 14 1026 15 HOH HOH A . I 5 HOH 15 1027 16 HOH HOH A . I 5 HOH 16 1028 17 HOH HOH A . I 5 HOH 17 1029 18 HOH HOH A . I 5 HOH 18 1030 19 HOH HOH A . I 5 HOH 19 1031 20 HOH HOH A . I 5 HOH 20 1032 21 HOH HOH A . I 5 HOH 21 1033 22 HOH HOH A . I 5 HOH 22 1034 23 HOH HOH A . I 5 HOH 23 1035 24 HOH HOH A . I 5 HOH 24 1036 25 HOH HOH A . I 5 HOH 25 1037 26 HOH HOH A . I 5 HOH 26 1038 27 HOH HOH A . I 5 HOH 27 1039 28 HOH HOH A . I 5 HOH 28 1040 29 HOH HOH A . # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 880 ? 1 MORE -25 ? 1 'SSA (A^2)' 4250 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/3 0.5000000000 0.8660254038 0.0000000000 -30.6750000000 0.8660254038 -0.5000000000 0.0000000000 53.1306585222 0.0000000000 0.0000000000 -1.0000000000 -14.5433333333 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A K 30 ? C K . 2 1 A K 31 ? D K . 3 1 A K 32 ? E K . 4 1 A NII 3 ? H NII . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? C K . ? A K 30 ? 1_555 O6 ? A DG 5 ? A DG 1005 ? 1_555 66.1 ? 2 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? C K . ? A K 30 ? 1_555 O6 ? A DG 11 ? A DG 1011 ? 1_555 118.6 ? 3 O6 ? A DG 5 ? A DG 1005 ? 1_555 K ? C K . ? A K 30 ? 1_555 O6 ? A DG 11 ? A DG 1011 ? 1_555 75.0 ? 4 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? D K . ? A K 31 ? 1_555 O6 ? A DG 9 ? A DG 1009 ? 1_555 66.6 ? 5 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? E K . ? A K 32 ? 1_555 O6 ? A DG 9 ? A DG 1009 ? 1_555 67.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' pdbx_struct_special_symmetry 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_ref_seq 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.value' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 3 'Structure model' '_struct_ref_seq.db_align_beg' 24 3 'Structure model' '_struct_ref_seq.db_align_end' 25 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 ADSC 'data collection' Quantum ? 2 d*TREK 'data reduction' . ? 3 d*TREK 'data scaling' . ? 4 PHASER phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DT _pdbx_validate_close_contact.auth_seq_id_1 1006 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 1026 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.99 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DG 1003 ? ? C6 A DG 1003 ? ? 1.356 1.419 -0.063 0.010 N 2 1 P A DG 1004 ? ? "O5'" A DG 1004 ? ? 1.533 1.593 -0.060 0.010 N 3 1 C4 A DG 1004 ? ? C5 A DG 1004 ? ? 1.336 1.379 -0.043 0.007 N 4 1 C4 A DG 1005 ? ? C5 A DG 1005 ? ? 1.332 1.379 -0.047 0.007 N 5 1 C6 A DG 1005 ? ? N1 A DG 1005 ? ? 1.332 1.391 -0.059 0.007 N 6 1 C4 A DG 1009 ? ? C5 A DG 1009 ? ? 1.319 1.379 -0.060 0.007 N 7 1 N7 A DG 1009 ? ? C8 A DG 1009 ? ? 1.267 1.305 -0.038 0.006 N 8 1 "O3'" A DG 1011 ? ? "C3'" A DG 1011 ? ? 1.371 1.419 -0.048 0.006 N 9 1 C6 A DG 1011 ? ? O6 A DG 1011 ? ? 1.294 1.237 0.057 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1002 ? ? "C4'" A DA 1002 ? ? "C3'" A DA 1002 ? ? 100.87 104.50 -3.63 0.40 N 2 1 "O4'" A DG 1003 ? ? "C1'" A DG 1003 ? ? "C2'" A DG 1003 ? ? 100.29 105.90 -5.61 0.80 N 3 1 "O4'" A DG 1003 ? ? "C1'" A DG 1003 ? ? N9 A DG 1003 ? ? 116.56 108.30 8.26 0.30 N 4 1 C2 A DG 1003 ? ? N3 A DG 1003 ? ? C4 A DG 1003 ? ? 115.21 111.90 3.31 0.50 N 5 1 C4 A DG 1003 ? ? C5 A DG 1003 ? ? C6 A DG 1003 ? ? 114.86 118.80 -3.94 0.60 N 6 1 C5 A DG 1003 ? ? C6 A DG 1003 ? ? N1 A DG 1003 ? ? 117.72 111.50 6.22 0.50 N 7 1 C4 A DG 1003 ? ? C5 A DG 1003 ? ? N7 A DG 1003 ? ? 114.32 110.80 3.52 0.40 N 8 1 C5 A DG 1003 ? ? N7 A DG 1003 ? ? C8 A DG 1003 ? ? 101.26 104.30 -3.04 0.50 N 9 1 N1 A DG 1003 ? ? C6 A DG 1003 ? ? O6 A DG 1003 ? ? 113.08 119.90 -6.82 0.60 N 10 1 N9 A DG 1004 ? ? "C1'" A DG 1004 ? ? "C2'" A DG 1004 ? ? 127.60 114.30 13.30 1.40 N 11 1 "O4'" A DG 1004 ? ? "C1'" A DG 1004 ? ? N9 A DG 1004 ? ? 103.62 108.00 -4.38 0.70 N 12 1 C5 A DG 1004 ? ? C6 A DG 1004 ? ? N1 A DG 1004 ? ? 116.63 111.50 5.13 0.50 N 13 1 C4 A DG 1004 ? ? C5 A DG 1004 ? ? N7 A DG 1004 ? ? 114.82 110.80 4.02 0.40 N 14 1 C5 A DG 1004 ? ? N7 A DG 1004 ? ? C8 A DG 1004 ? ? 100.74 104.30 -3.56 0.50 N 15 1 C5 A DG 1004 ? ? C6 A DG 1004 ? ? O6 A DG 1004 ? ? 122.57 128.60 -6.03 0.60 N 16 1 "O4'" A DG 1005 ? ? "C1'" A DG 1005 ? ? N9 A DG 1005 ? ? 119.87 108.30 11.57 0.30 N 17 1 C6 A DG 1005 ? ? N1 A DG 1005 ? ? C2 A DG 1005 ? ? 120.14 125.10 -4.96 0.60 N 18 1 N3 A DG 1005 ? ? C4 A DG 1005 ? ? C5 A DG 1005 ? ? 125.02 128.60 -3.58 0.50 N 19 1 C5 A DG 1005 ? ? C6 A DG 1005 ? ? N1 A DG 1005 ? ? 115.92 111.50 4.42 0.50 N 20 1 N3 A DG 1005 ? ? C4 A DG 1005 ? ? N9 A DG 1005 ? ? 130.50 126.00 4.50 0.60 N 21 1 C5 A DG 1005 ? ? C6 A DG 1005 ? ? O6 A DG 1005 ? ? 121.17 128.60 -7.43 0.60 N 22 1 "O4'" A DT 1006 ? ? "C1'" A DT 1006 ? ? N1 A DT 1006 ? ? 115.49 108.30 7.19 0.30 N 23 1 C4 A DT 1006 ? ? C5 A DT 1006 ? ? C7 A DT 1006 ? ? 124.59 119.00 5.59 0.60 N 24 1 C6 A DT 1006 ? ? C5 A DT 1006 ? ? C7 A DT 1006 ? ? 119.13 122.90 -3.77 0.60 N 25 1 "O3'" A DT 1006 ? ? P A DT 1007 ? ? OP1 A DT 1007 ? ? 120.06 110.50 9.56 1.10 Y 26 1 "O5'" A DT 1007 ? ? "C5'" A DT 1007 ? ? "C4'" A DT 1007 ? ? 104.14 109.40 -5.26 0.80 N 27 1 "C3'" A DT 1007 ? ? "C2'" A DT 1007 ? ? "C1'" A DT 1007 ? ? 97.18 102.40 -5.22 0.80 N 28 1 "O4'" A DT 1007 ? ? "C1'" A DT 1007 ? ? N1 A DT 1007 ? ? 110.92 108.30 2.62 0.30 N 29 1 C2 A DT 1007 ? ? N3 A DT 1007 ? ? C4 A DT 1007 ? ? 123.57 127.20 -3.63 0.60 N 30 1 C2 A DG 1009 ? ? N3 A DG 1009 ? ? C4 A DG 1009 ? ? 115.49 111.90 3.59 0.50 N 31 1 C4 A DG 1009 ? ? C5 A DG 1009 ? ? C6 A DG 1009 ? ? 114.27 118.80 -4.53 0.60 N 32 1 C5 A DG 1009 ? ? C6 A DG 1009 ? ? N1 A DG 1009 ? ? 115.33 111.50 3.83 0.50 N 33 1 N1 A DG 1009 ? ? C6 A DG 1009 ? ? O6 A DG 1009 ? ? 115.17 119.90 -4.73 0.60 N 34 1 "O4'" A DG 1010 ? ? "C4'" A DG 1010 ? ? "C3'" A DG 1010 ? ? 102.04 104.50 -2.46 0.40 N 35 1 "O4'" A DG 1010 ? ? "C1'" A DG 1010 ? ? N9 A DG 1010 ? ? 101.51 108.00 -6.49 0.70 N 36 1 N9 A DG 1010 ? ? C4 A DG 1010 ? ? C5 A DG 1010 ? ? 102.65 105.40 -2.75 0.40 N 37 1 N1 A DG 1010 ? ? C6 A DG 1010 ? ? O6 A DG 1010 ? ? 114.76 119.90 -5.14 0.60 N 38 1 C5 A DG 1010 ? ? C6 A DG 1010 ? ? O6 A DG 1010 ? ? 132.73 128.60 4.13 0.60 N 39 1 "O5'" A DG 1011 ? ? P A DG 1011 ? ? OP2 A DG 1011 ? ? 99.72 105.70 -5.98 0.90 N 40 1 "O4'" A DG 1011 ? ? "C1'" A DG 1011 ? ? N9 A DG 1011 ? ? 113.74 108.30 5.44 0.30 N 41 1 C5 A DG 1011 ? ? C6 A DG 1011 ? ? N1 A DG 1011 ? ? 108.07 111.50 -3.43 0.50 N 42 1 C5 A DG 1011 ? ? C6 A DG 1011 ? ? O6 A DG 1011 ? ? 133.50 128.60 4.90 0.60 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DT 1001 ? "O5'" ? A DT 1 "O5'" 2 1 Y 1 A DT 1001 ? "C5'" ? A DT 1 "C5'" 3 1 Y 1 A DT 1001 ? "C4'" ? A DT 1 "C4'" 4 1 Y 1 A DT 1001 ? "O4'" ? A DT 1 "O4'" 5 1 Y 1 A DT 1001 ? "C3'" ? A DT 1 "C3'" 6 1 Y 1 A DT 1001 ? "C2'" ? A DT 1 "C2'" 7 1 Y 1 A DT 1001 ? "C1'" ? A DT 1 "C1'" 8 1 Y 1 A DT 1001 ? N1 ? A DT 1 N1 9 1 Y 1 A DT 1001 ? C2 ? A DT 1 C2 10 1 Y 1 A DT 1001 ? O2 ? A DT 1 O2 11 1 Y 1 A DT 1001 ? N3 ? A DT 1 N3 12 1 Y 1 A DT 1001 ? C4 ? A DT 1 C4 13 1 Y 1 A DT 1001 ? O4 ? A DT 1 O4 14 1 Y 1 A DT 1001 ? C5 ? A DT 1 C5 15 1 Y 1 A DT 1001 ? C7 ? A DT 1 C7 16 1 Y 1 A DT 1001 ? C6 ? A DT 1 C6 17 1 Y 1 A DT 1012 ? "C5'" ? A DT 12 "C5'" 18 1 Y 1 A DT 1012 ? "C4'" ? A DT 12 "C4'" 19 1 Y 1 A DT 1012 ? "O4'" ? A DT 12 "O4'" 20 1 Y 1 A DT 1012 ? "C3'" ? A DT 12 "C3'" 21 1 Y 1 A DT 1012 ? "O3'" ? A DT 12 "O3'" 22 1 Y 1 A DT 1012 ? "C2'" ? A DT 12 "C2'" 23 1 Y 1 A DT 1012 ? "C1'" ? A DT 12 "C1'" 24 1 Y 1 A DT 1012 ? N1 ? A DT 12 N1 25 1 Y 1 A DT 1012 ? C2 ? A DT 12 C2 26 1 Y 1 A DT 1012 ? O2 ? A DT 12 O2 27 1 Y 1 A DT 1012 ? N3 ? A DT 12 N3 28 1 Y 1 A DT 1012 ? C4 ? A DT 12 C4 29 1 Y 1 A DT 1012 ? O4 ? A DT 12 O4 30 1 Y 1 A DT 1012 ? C5 ? A DT 12 C5 31 1 Y 1 A DT 1012 ? C7 ? A DT 12 C7 32 1 Y 1 A DT 1012 ? C6 ? A DT 12 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 HOH O O N N 110 HOH H1 H N N 111 HOH H2 H N N 112 K K K N N 113 NA NA NA N N 114 NII O6 O N N 115 NII C30 C N N 116 NII C29 C N N 117 NII C28 C N N 118 NII N3 N N N 119 NII C9 C Y N 120 NII C8 C Y N 121 NII C7 C Y N 122 NII C14 C N N 123 NII O1 O N N 124 NII N2 N N N 125 NII C18 C N N 126 NII C19 C N N 127 NII C20 C N N 128 NII N5 N N N 129 NII C24 C N N 130 NII C23 C N N 131 NII C13 C N N 132 NII O4 O N N 133 NII C10 C Y N 134 NII C11 C N N 135 NII O2 O N N 136 NII N1 N N N 137 NII C15 C N N 138 NII C16 C N N 139 NII C17 C N N 140 NII N4 N N N 141 NII C21 C N N 142 NII C22 C N N 143 NII C5 C Y N 144 NII C6 C Y N 145 NII C12 C N N 146 NII O3 O N N 147 NII C4 C Y N 148 NII C3 C Y N 149 NII C2 C Y N 150 NII C1 C Y N 151 NII N6 N N N 152 NII C25 C N N 153 NII C26 C N N 154 NII C27 C N N 155 NII O5 O N N 156 NII HO6 H N N 157 NII H30 H N N 158 NII H30A H N N 159 NII H29 H N N 160 NII H29A H N N 161 NII H28 H N N 162 NII H28A H N N 163 NII HN3 H N N 164 NII H8 H N N 165 NII H18 H N N 166 NII H18A H N N 167 NII H19 H N N 168 NII H19A H N N 169 NII H20 H N N 170 NII H20A H N N 171 NII H24 H N N 172 NII H24A H N N 173 NII H24B H N N 174 NII H23 H N N 175 NII H23A H N N 176 NII H23B H N N 177 NII H15 H N N 178 NII H15A H N N 179 NII H16 H N N 180 NII H16A H N N 181 NII H17 H N N 182 NII H17A H N N 183 NII H21 H N N 184 NII H21A H N N 185 NII H21B H N N 186 NII H22 H N N 187 NII H22A H N N 188 NII H22B H N N 189 NII H1 H N N 190 NII HN6 H N N 191 NII H25 H N N 192 NII H25A H N N 193 NII H26 H N N 194 NII H26A H N N 195 NII H27 H N N 196 NII H27A H N N 197 NII HO5 H N N 198 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DT OP3 P sing N N 78 DT OP3 HOP3 sing N N 79 DT P OP1 doub N N 80 DT P OP2 sing N N 81 DT P "O5'" sing N N 82 DT OP2 HOP2 sing N N 83 DT "O5'" "C5'" sing N N 84 DT "C5'" "C4'" sing N N 85 DT "C5'" "H5'" sing N N 86 DT "C5'" "H5''" sing N N 87 DT "C4'" "O4'" sing N N 88 DT "C4'" "C3'" sing N N 89 DT "C4'" "H4'" sing N N 90 DT "O4'" "C1'" sing N N 91 DT "C3'" "O3'" sing N N 92 DT "C3'" "C2'" sing N N 93 DT "C3'" "H3'" sing N N 94 DT "O3'" "HO3'" sing N N 95 DT "C2'" "C1'" sing N N 96 DT "C2'" "H2'" sing N N 97 DT "C2'" "H2''" sing N N 98 DT "C1'" N1 sing N N 99 DT "C1'" "H1'" sing N N 100 DT N1 C2 sing N N 101 DT N1 C6 sing N N 102 DT C2 O2 doub N N 103 DT C2 N3 sing N N 104 DT N3 C4 sing N N 105 DT N3 H3 sing N N 106 DT C4 O4 doub N N 107 DT C4 C5 sing N N 108 DT C5 C7 sing N N 109 DT C5 C6 doub N N 110 DT C7 H71 sing N N 111 DT C7 H72 sing N N 112 DT C7 H73 sing N N 113 DT C6 H6 sing N N 114 HOH O H1 sing N N 115 HOH O H2 sing N N 116 NII O6 C30 sing N N 117 NII C30 C29 sing N N 118 NII C29 C28 sing N N 119 NII C28 N3 sing N N 120 NII N3 C9 sing N N 121 NII C9 C8 sing Y N 122 NII C9 C10 doub Y N 123 NII C8 C7 doub Y N 124 NII C7 C14 sing N N 125 NII C7 C4 sing Y N 126 NII C14 O1 doub N N 127 NII C14 N2 sing N N 128 NII N2 C18 sing N N 129 NII N2 C13 sing N N 130 NII C18 C19 sing N N 131 NII C19 C20 sing N N 132 NII C20 N5 sing N N 133 NII N5 C24 sing N N 134 NII N5 C23 sing N N 135 NII C13 O4 doub N N 136 NII C13 C3 sing N N 137 NII C10 C11 sing N N 138 NII C10 C5 sing Y N 139 NII C11 O2 doub N N 140 NII C11 N1 sing N N 141 NII N1 C15 sing N N 142 NII N1 C12 sing N N 143 NII C15 C16 sing N N 144 NII C16 C17 sing N N 145 NII C17 N4 sing N N 146 NII N4 C21 sing N N 147 NII N4 C22 sing N N 148 NII C5 C6 doub Y N 149 NII C5 C4 sing Y N 150 NII C6 C12 sing N N 151 NII C6 C1 sing Y N 152 NII C12 O3 doub N N 153 NII C4 C3 doub Y N 154 NII C3 C2 sing Y N 155 NII C2 C1 doub Y N 156 NII C2 N6 sing N N 157 NII N6 C25 sing N N 158 NII C25 C26 sing N N 159 NII C26 C27 sing N N 160 NII C27 O5 sing N N 161 NII O6 HO6 sing N N 162 NII C30 H30 sing N N 163 NII C30 H30A sing N N 164 NII C29 H29 sing N N 165 NII C29 H29A sing N N 166 NII C28 H28 sing N N 167 NII C28 H28A sing N N 168 NII N3 HN3 sing N N 169 NII C8 H8 sing N N 170 NII C18 H18 sing N N 171 NII C18 H18A sing N N 172 NII C19 H19 sing N N 173 NII C19 H19A sing N N 174 NII C20 H20 sing N N 175 NII C20 H20A sing N N 176 NII C24 H24 sing N N 177 NII C24 H24A sing N N 178 NII C24 H24B sing N N 179 NII C23 H23 sing N N 180 NII C23 H23A sing N N 181 NII C23 H23B sing N N 182 NII C15 H15 sing N N 183 NII C15 H15A sing N N 184 NII C16 H16 sing N N 185 NII C16 H16A sing N N 186 NII C17 H17 sing N N 187 NII C17 H17A sing N N 188 NII C21 H21 sing N N 189 NII C21 H21A sing N N 190 NII C21 H21B sing N N 191 NII C22 H22 sing N N 192 NII C22 H22A sing N N 193 NII C22 H22B sing N N 194 NII C1 H1 sing N N 195 NII N6 HN6 sing N N 196 NII C25 H25 sing N N 197 NII C25 H25A sing N N 198 NII C26 H26 sing N N 199 NII C26 H26A sing N N 200 NII C27 H27 sing N N 201 NII C27 H27A sing N N 202 NII O5 HO5 sing N N 203 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3CCO 'double helix' 3CCO 'parallel strands' 3CCO 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 A DG 9 1_555 1.522 3.394 -0.550 13.058 -0.300 -92.575 1 A_DG1003:DG1009_A A 1003 ? A 1009 ? 6 ? 1 A DG 4 1_555 A DG 10 1_555 1.855 3.201 -0.199 5.372 -6.757 -91.427 2 A_DG1004:DG1010_A A 1004 ? A 1010 ? 6 ? 1 A DG 5 1_555 A DG 11 1_555 1.688 3.266 -0.280 11.220 -20.117 -91.436 3 A_DG1005:DG1011_A A 1005 ? A 1011 ? 6 ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 A DG 9 1_555 A DG 4 1_555 A DG 10 1_555 -0.196 -1.127 3.381 -1.400 1.353 36.516 -1.988 0.114 3.343 2.157 2.232 36.566 1 AA_DG1003DG1004:DG1010DG1009_AA A 1003 ? A 1009 ? A 1004 ? A 1010 ? 1 A DG 4 1_555 A DG 10 1_555 A DG 5 1_555 A DG 11 1_555 -0.329 -0.548 3.032 6.705 8.483 19.112 -4.327 3.147 2.336 23.290 -18.409 21.934 2 AA_DG1004DG1005:DG1011DG1010_AA A 1004 ? A 1010 ? A 1005 ? A 1011 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'POTASSIUM ION' K 4 '2,7-bis[3-(dimethylamino)propyl]-4,9-bis[(3-hydroxypropyl)amino]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone' NII 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1KF1 _pdbx_initial_refinement_model.details 'PDB ENTRY 1KF1' #