HEADER IMMUNE SYSTEM 26-FEB-08 3CDC TITLE KI O18/O8 N34I/Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN AMYLOIDOGENIC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: KI O18/O8 GERMLINE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET12A KEYWDS GREEK KEY BETA BARREL, AMYLOID, IMMUNOGLOBULIN, LIGHT CHAIN, VARIABLE KEYWDS 2 DOMAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.M.BADEN,E.G.RANDLES,J.R.THOMPSON,M.RAMIREZ-ALVARADO REVDAT 5 30-AUG-23 3CDC 1 REMARK REVDAT 4 09-JUN-09 3CDC 1 REVDAT REVDAT 3 24-FEB-09 3CDC 1 VERSN REVDAT 2 02-DEC-08 3CDC 1 JRNL REVDAT 1 02-SEP-08 3CDC 0 JRNL AUTH E.M.BADEN,E.G.RANDLES,A.K.ABOAGYE,J.R.THOMPSON, JRNL AUTH 2 M.RAMIREZ-ALVARADO JRNL TITL STRUCTURAL INSIGHTS INTO THE ROLE OF MUTATIONS IN JRNL TITL 2 AMYLOIDOGENESIS. JRNL REF J.BIOL.CHEM. V. 283 30950 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18768467 JRNL DOI 10.1074/JBC.M804822200 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2279 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.5070 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.5170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1862 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2562 ; 1.858 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ;14.494 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;37.943 ;25.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;12.578 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;14.250 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1477 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 905 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1340 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 408 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1188 ; 1.806 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1954 ; 2.678 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 674 ; 3.552 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 608 ; 4.988 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1958 ; 2.078 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 403 ; 8.316 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1806 ; 5.761 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): -35.3327 19.1338 2.8762 REMARK 3 T TENSOR REMARK 3 T11: -0.0186 T22: -0.0144 REMARK 3 T33: -0.0289 T12: -0.0008 REMARK 3 T13: 0.0004 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.0369 L22: 0.3690 REMARK 3 L33: 0.3167 L12: 0.0396 REMARK 3 L13: -0.0244 L23: -0.0571 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: 0.0040 S13: 0.0009 REMARK 3 S21: 0.0042 S22: 0.0050 S23: -0.0096 REMARK 3 S31: 0.0064 S32: -0.0118 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9832 34.2252 -1.1271 REMARK 3 T TENSOR REMARK 3 T11: -0.0133 T22: -0.0208 REMARK 3 T33: -0.0312 T12: -0.0007 REMARK 3 T13: -0.0014 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.7736 L22: 0.0787 REMARK 3 L33: 0.1931 L12: 0.1156 REMARK 3 L13: 0.1204 L23: 0.0367 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: 0.0298 S13: -0.0084 REMARK 3 S21: 0.0161 S22: -0.0120 S23: -0.0021 REMARK 3 S31: -0.0007 S32: -0.0065 S33: -0.0132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CDC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5241 REMARK 200 MONOCHROMATOR : CONFOCAL OPTICS REMARK 200 OPTICS : OSMIC VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64183 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 34.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.71 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48300 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Q20 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM CITRATE IN 0.1 M TRIS REMARK 280 BUFFER, PH 8.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.499980 -0.866061 0.000000 0.00000 REMARK 290 SMTRY2 2 0.865990 -0.500020 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.51367 REMARK 290 SMTRY1 3 -0.500020 0.866061 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.865990 -0.499980 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.02733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.77050 REMARK 290 SMTRY1 5 0.499980 0.866061 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.865990 0.500020 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.28417 REMARK 290 SMTRY1 6 0.500020 -0.866061 0.000000 0.00000 REMARK 290 SMTRY2 6 0.865990 0.499980 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.25683 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 250 O HOH A 285 2.13 REMARK 500 O HOH B 263 O HOH B 282 2.15 REMARK 500 O HOH A 139 O HOH A 269 2.16 REMARK 500 O HOH A 137 O HOH B 183 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 41 N - CA - C ANGL. DEV. = -20.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -130.01 48.34 REMARK 500 SER A 30 -125.67 55.34 REMARK 500 ALA A 51 -33.05 68.14 REMARK 500 ALA A 84 174.36 178.84 REMARK 500 SER B 30 -119.95 49.26 REMARK 500 SER B 30 -131.91 50.59 REMARK 500 ALA B 51 -30.76 72.30 REMARK 500 SER B 52 -2.86 -142.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 40 GLY A 41 125.89 REMARK 500 GLU A 105 ILE A 106 130.32 REMARK 500 ILE A 106 LYS A 107 103.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CDF RELATED DB: PDB REMARK 900 KI O18/O8 Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN REMARK 900 RELATED ID: 3CDY RELATED DB: PDB REMARK 900 AL-09 H87Y, IMMUGLOBULIN LIGHT CHAIN VARIABLE DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE REMARK 999 UNIPROT DATABASE (UNIPROT) AT THE TIME OF DEPOSITION.THE AUTHORS REMARK 999 STATED MUTATIONS N34I AND Y87H IN THE SEQUENCE OF THE PROTEIN DBREF 3CDC A -1 107 PDB 3CDC 3CDC -1 107 DBREF 3CDC B -1 107 PDB 3CDC 3CDC -1 107 SEQRES 1 A 109 SER THR ASP ILE GLN MET THR GLN SER PRO SER SER LEU SEQRES 2 A 109 SER ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN SEQRES 3 A 109 ALA SER GLN ASP ILE SER ASN TYR LEU ILE TRP TYR GLN SEQRES 4 A 109 GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP SEQRES 5 A 109 ALA SER ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER SEQRES 6 A 109 GLY SER GLY SER GLY THR ASP PHE THR PHE THR ILE SER SEQRES 7 A 109 SER LEU GLN PRO GLU ASP ILE ALA THR TYR HIS CYS GLN SEQRES 8 A 109 GLN TYR ASP ASN LEU PRO TYR THR PHE GLY GLN GLY THR SEQRES 9 A 109 LYS LEU GLU ILE LYS SEQRES 1 B 109 SER THR ASP ILE GLN MET THR GLN SER PRO SER SER LEU SEQRES 2 B 109 SER ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN SEQRES 3 B 109 ALA SER GLN ASP ILE SER ASN TYR LEU ILE TRP TYR GLN SEQRES 4 B 109 GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP SEQRES 5 B 109 ALA SER ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER SEQRES 6 B 109 GLY SER GLY SER GLY THR ASP PHE THR PHE THR ILE SER SEQRES 7 B 109 SER LEU GLN PRO GLU ASP ILE ALA THR TYR HIS CYS GLN SEQRES 8 B 109 GLN TYR ASP ASN LEU PRO TYR THR PHE GLY GLN GLY THR SEQRES 9 B 109 LYS LEU GLU ILE LYS FORMUL 3 HOH *402(H2 O) HELIX 1 1 GLN A 79 ILE A 83 5 5 HELIX 2 2 GLN B 79 ILE B 83 5 5 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 O GLN A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O PHE A 73 N ILE A 21 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 B 6 SER A 10 ALA A 13 0 SHEET 2 B 6 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N GLN A 38 O THR A 85 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 ASN A 53 LEU A 54 -1 O ASN A 53 N TYR A 49 SHEET 1 C 4 SER A 10 ALA A 13 0 SHEET 2 C 4 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 4 MET B 4 SER B 7 0 SHEET 2 D 4 VAL B 19 ALA B 25 -1 O GLN B 24 N THR B 5 SHEET 3 D 4 ASP B 70 ILE B 75 -1 O PHE B 73 N ILE B 21 SHEET 4 D 4 PHE B 62 GLY B 66 -1 N SER B 63 O THR B 74 SHEET 1 E 6 SER B 10 ALA B 13 0 SHEET 2 E 6 THR B 102 ILE B 106 1 O LYS B 103 N LEU B 11 SHEET 3 E 6 THR B 85 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 E 6 LEU B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 E 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 E 6 ASN B 53 LEU B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 F 4 SER B 10 ALA B 13 0 SHEET 2 F 4 THR B 102 ILE B 106 1 O LYS B 103 N LEU B 11 SHEET 3 F 4 THR B 85 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 F 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.14 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.08 CISPEP 1 SER A 7 PRO A 8 0 -4.56 CISPEP 2 LEU A 94 PRO A 95 0 -3.03 CISPEP 3 SER B 7 PRO B 8 0 -6.68 CISPEP 4 SER B 7 PRO B 8 0 3.44 CISPEP 5 LEU B 94 PRO B 95 0 -2.09 CRYST1 73.832 73.829 97.541 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013544 0.007821 0.000000 0.00000 SCALE2 0.000000 0.015641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010252 0.00000