data_3CDH # _entry.id 3CDH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3CDH RCSB RCSB046641 WWPDB D_1000046641 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC88689 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CDH _pdbx_database_status.recvd_initial_deposition_date 2008-02-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Volkart, L.' 2 'Keigher, L.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of the MarR family transcriptional regulator SPO1453 from Silicibacter pomeroyi.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Volkart, L.' 2 primary 'Keigher, L.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3CDH _cell.length_a 124.140 _cell.length_b 124.140 _cell.length_c 140.186 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CDH _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, MarR family' 17627.225 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 6 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 water nat water 18.015 113 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)NDTPDDTFVSGYLLYLLAASSEEASAQFHDHIRAQGLRVPEWRVLACLVDNDA(MSE)(MSE)ITRLAKLSL (MSE)EQSR(MSE)TRIVDQ(MSE)DARGLVTRVADAKDKRRVRVRLTDDGRALAESLVASARAHETRLLSALADTDAAR IKGVLRTLLDVLDRPRESR ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMNDTPDDTFVSGYLLYLLAASSEEASAQFHDHIRAQGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQ MDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVASARAHETRLLSALADTDAARIKGVLRTLLDVLDRPRESR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC88689 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ASN n 1 6 ASP n 1 7 THR n 1 8 PRO n 1 9 ASP n 1 10 ASP n 1 11 THR n 1 12 PHE n 1 13 VAL n 1 14 SER n 1 15 GLY n 1 16 TYR n 1 17 LEU n 1 18 LEU n 1 19 TYR n 1 20 LEU n 1 21 LEU n 1 22 ALA n 1 23 ALA n 1 24 SER n 1 25 SER n 1 26 GLU n 1 27 GLU n 1 28 ALA n 1 29 SER n 1 30 ALA n 1 31 GLN n 1 32 PHE n 1 33 HIS n 1 34 ASP n 1 35 HIS n 1 36 ILE n 1 37 ARG n 1 38 ALA n 1 39 GLN n 1 40 GLY n 1 41 LEU n 1 42 ARG n 1 43 VAL n 1 44 PRO n 1 45 GLU n 1 46 TRP n 1 47 ARG n 1 48 VAL n 1 49 LEU n 1 50 ALA n 1 51 CYS n 1 52 LEU n 1 53 VAL n 1 54 ASP n 1 55 ASN n 1 56 ASP n 1 57 ALA n 1 58 MSE n 1 59 MSE n 1 60 ILE n 1 61 THR n 1 62 ARG n 1 63 LEU n 1 64 ALA n 1 65 LYS n 1 66 LEU n 1 67 SER n 1 68 LEU n 1 69 MSE n 1 70 GLU n 1 71 GLN n 1 72 SER n 1 73 ARG n 1 74 MSE n 1 75 THR n 1 76 ARG n 1 77 ILE n 1 78 VAL n 1 79 ASP n 1 80 GLN n 1 81 MSE n 1 82 ASP n 1 83 ALA n 1 84 ARG n 1 85 GLY n 1 86 LEU n 1 87 VAL n 1 88 THR n 1 89 ARG n 1 90 VAL n 1 91 ALA n 1 92 ASP n 1 93 ALA n 1 94 LYS n 1 95 ASP n 1 96 LYS n 1 97 ARG n 1 98 ARG n 1 99 VAL n 1 100 ARG n 1 101 VAL n 1 102 ARG n 1 103 LEU n 1 104 THR n 1 105 ASP n 1 106 ASP n 1 107 GLY n 1 108 ARG n 1 109 ALA n 1 110 LEU n 1 111 ALA n 1 112 GLU n 1 113 SER n 1 114 LEU n 1 115 VAL n 1 116 ALA n 1 117 SER n 1 118 ALA n 1 119 ARG n 1 120 ALA n 1 121 HIS n 1 122 GLU n 1 123 THR n 1 124 ARG n 1 125 LEU n 1 126 LEU n 1 127 SER n 1 128 ALA n 1 129 LEU n 1 130 ALA n 1 131 ASP n 1 132 THR n 1 133 ASP n 1 134 ALA n 1 135 ALA n 1 136 ARG n 1 137 ILE n 1 138 LYS n 1 139 GLY n 1 140 VAL n 1 141 LEU n 1 142 ARG n 1 143 THR n 1 144 LEU n 1 145 LEU n 1 146 ASP n 1 147 VAL n 1 148 LEU n 1 149 ASP n 1 150 ARG n 1 151 PRO n 1 152 ARG n 1 153 GLU n 1 154 SER n 1 155 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Silicibacter _entity_src_gen.pdbx_gene_src_gene SPO1453 _entity_src_gen.gene_src_species 'Silicibacter pomeroyi' _entity_src_gen.gene_src_strain 'DSS-3 / DSM 15171' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Silicibacter pomeroyi DSS-3' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 246200 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700808 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LTG1_SILPO _struct_ref.pdbx_db_accession Q5LTG1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNDTPDDTFVSGYLLYLLAASSEEASAQFHDHIRAQGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDA RGLVTRVADAKDKRRVRVRLTDDGRALAESLVASARAHETRLLSALADTDAARIKGVLRTLLDVLDRPRESR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3CDH A 4 ? 155 ? Q5LTG1 1 ? 152 ? 1 152 2 1 3CDH B 4 ? 155 ? Q5LTG1 1 ? 152 ? 1 152 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3CDH SER A 1 ? UNP Q5LTG1 ? ? 'EXPRESSION TAG' -2 1 1 3CDH ASN A 2 ? UNP Q5LTG1 ? ? 'EXPRESSION TAG' -1 2 1 3CDH ALA A 3 ? UNP Q5LTG1 ? ? 'EXPRESSION TAG' 0 3 2 3CDH SER B 1 ? UNP Q5LTG1 ? ? 'EXPRESSION TAG' -2 4 2 3CDH ASN B 2 ? UNP Q5LTG1 ? ? 'EXPRESSION TAG' -1 5 2 3CDH ALA B 3 ? UNP Q5LTG1 ? ? 'EXPRESSION TAG' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3CDH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.42 _exptl_crystal.density_percent_sol 72.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '2.0M Ammonium sulfate, 0.1M Citrate pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type APS-1 _diffrn_detector.pdbx_collection_date 2007-11-21 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 # _reflns.entry_id 3CDH _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.370 _reflns.d_resolution_high 2.69 _reflns.number_obs 18036 _reflns.number_all 18036 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_Rsym_value 0.115 _reflns.pdbx_netI_over_sigmaI 7.2 _reflns.B_iso_Wilson_estimate 55.32 _reflns.pdbx_redundancy 11.900 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.69 _reflns_shell.d_res_low 2.80 _reflns_shell.percent_possible_all 94.2 _reflns_shell.Rmerge_I_obs 0.835 _reflns_shell.pdbx_Rsym_value 0.835 _reflns_shell.meanI_over_sigI_obs 2.600 _reflns_shell.pdbx_redundancy 12.60 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3CDH _refine.ls_number_reflns_obs 17960 _refine.ls_number_reflns_all 17960 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.37 _refine.ls_d_res_high 2.69 _refine.ls_percent_reflns_obs 98.42 _refine.ls_R_factor_obs 0.20154 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20019 _refine.ls_R_factor_R_free 0.22748 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 915 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 54.70 _refine.aniso_B[1][1] -0.69 _refine.aniso_B[2][2] -0.69 _refine.aniso_B[3][3] 1.03 _refine.aniso_B[1][2] -0.34 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.330 _refine.pdbx_overall_ESU_R_Free 0.240 _refine.overall_SU_ML 0.170 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 16.098 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2093 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 2254 _refine_hist.d_res_high 2.69 _refine_hist.d_res_low 35.37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.021 ? 2419 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.623 1.977 ? 3292 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.213 5.000 ? 315 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.829 21.026 ? 117 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.750 15.000 ? 438 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.544 15.000 ? 43 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 377 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1837 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.253 0.200 ? 1230 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.311 0.200 ? 1719 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.180 0.200 ? 158 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.260 0.200 ? 50 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.310 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.268 1.500 ? 1491 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.919 2.000 ? 2411 'X-RAY DIFFRACTION' ? r_scbond_it 3.281 3.000 ? 928 'X-RAY DIFFRACTION' ? r_scangle_it 5.421 4.500 ? 881 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.69 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work 1175 _refine_ls_shell.R_factor_R_work 0.384 _refine_ls_shell.percent_reflns_obs 94.18 _refine_ls_shell.R_factor_R_free 0.409 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CDH _struct.title 'Crystal structure of the MarR family transcriptional regulator SPO1453 from Silicibacter pomeroyi DSS-3' _struct.pdbx_descriptor 'Transcriptional regulator, MarR family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CDH _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text ;MarR, HELIX-TURN-HLEIX, TRANSCRIPTIONAL REGULATOR, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, DNA-binding, Transcription regulation, TRANSCRIPTION REGULATOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 11 ? TYR A 16 ? THR A 8 TYR A 13 1 ? 6 HELX_P HELX_P2 2 TYR A 16 ? GLN A 39 ? TYR A 13 GLN A 36 1 ? 24 HELX_P HELX_P3 3 ARG A 42 ? VAL A 53 ? ARG A 39 VAL A 50 1 ? 12 HELX_P HELX_P4 4 MSE A 59 ? SER A 67 ? MSE A 56 SER A 64 1 ? 9 HELX_P HELX_P5 5 GLU A 70 ? ARG A 84 ? GLU A 67 ARG A 81 1 ? 15 HELX_P HELX_P6 6 THR A 104 ? LEU A 129 ? THR A 101 LEU A 126 1 ? 26 HELX_P HELX_P7 7 THR A 132 ? ALA A 135 ? THR A 129 ALA A 132 5 ? 4 HELX_P HELX_P8 8 ARG A 136 ? LEU A 148 ? ARG A 133 LEU A 145 1 ? 13 HELX_P HELX_P9 9 THR B 11 ? TYR B 16 ? THR B 8 TYR B 13 1 ? 6 HELX_P HELX_P10 10 TYR B 16 ? GLN B 39 ? TYR B 13 GLN B 36 1 ? 24 HELX_P HELX_P11 11 ARG B 42 ? VAL B 53 ? ARG B 39 VAL B 50 1 ? 12 HELX_P HELX_P12 12 ILE B 60 ? LEU B 68 ? ILE B 57 LEU B 65 1 ? 9 HELX_P HELX_P13 13 GLU B 70 ? ARG B 84 ? GLU B 67 ARG B 81 1 ? 15 HELX_P HELX_P14 14 THR B 104 ? ALA B 130 ? THR B 101 ALA B 127 1 ? 27 HELX_P HELX_P15 15 THR B 132 ? ALA B 135 ? THR B 129 ALA B 132 5 ? 4 HELX_P HELX_P16 16 ARG B 136 ? LEU B 148 ? ARG B 133 LEU B 145 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 57 C ? ? ? 1_555 A MSE 58 N ? ? A ALA 54 A MSE 55 1_555 ? ? ? ? ? ? ? 1.321 ? covale2 covale ? ? A MSE 58 C ? ? ? 1_555 A MSE 59 N ? ? A MSE 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A MSE 59 C ? ? ? 1_555 A ILE 60 N ? ? A MSE 56 A ILE 57 1_555 ? ? ? ? ? ? ? 1.336 ? covale4 covale ? ? A LEU 68 C ? ? ? 1_555 A MSE 69 N ? ? A LEU 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale ? ? A MSE 69 C ? ? ? 1_555 A GLU 70 N ? ? A MSE 66 A GLU 67 1_555 ? ? ? ? ? ? ? 1.311 ? covale6 covale ? ? A ARG 73 C A ? ? 1_555 A MSE 74 N ? ? A ARG 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale ? ? A ARG 73 C B ? ? 1_555 A MSE 74 N ? ? A ARG 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.336 ? covale8 covale ? ? A MSE 74 C ? ? ? 1_555 A THR 75 N A ? A MSE 71 A THR 72 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? A MSE 74 C ? ? ? 1_555 A THR 75 N B ? A MSE 71 A THR 72 1_555 ? ? ? ? ? ? ? 1.335 ? covale10 covale ? ? A GLN 80 C ? ? ? 1_555 A MSE 81 N ? ? A GLN 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale ? ? A MSE 81 C ? ? ? 1_555 A ASP 82 N ? ? A MSE 78 A ASP 79 1_555 ? ? ? ? ? ? ? 1.328 ? covale12 covale ? ? B ALA 57 C ? ? ? 1_555 B MSE 58 N ? ? B ALA 54 B MSE 55 1_555 ? ? ? ? ? ? ? 1.327 ? covale13 covale ? ? B MSE 58 C ? ? ? 1_555 B MSE 59 N ? ? B MSE 55 B MSE 56 1_555 ? ? ? ? ? ? ? 1.325 ? covale14 covale ? ? B MSE 59 C ? ? ? 1_555 B ILE 60 N ? ? B MSE 56 B ILE 57 1_555 ? ? ? ? ? ? ? 1.321 ? covale15 covale ? ? B LEU 68 C ? ? ? 1_555 B MSE 69 N ? ? B LEU 65 B MSE 66 1_555 ? ? ? ? ? ? ? 1.332 ? covale16 covale ? ? B MSE 69 C ? ? ? 1_555 B GLU 70 N ? ? B MSE 66 B GLU 67 1_555 ? ? ? ? ? ? ? 1.319 ? covale17 covale ? ? B ARG 73 C ? ? ? 1_555 B MSE 74 N ? ? B ARG 70 B MSE 71 1_555 ? ? ? ? ? ? ? 1.332 ? covale18 covale ? ? B MSE 74 C ? ? ? 1_555 B THR 75 N ? ? B MSE 71 B THR 72 1_555 ? ? ? ? ? ? ? 1.313 ? covale19 covale ? ? B GLN 80 C ? ? ? 1_555 B MSE 81 N ? ? B GLN 77 B MSE 78 1_555 ? ? ? ? ? ? ? 1.330 ? covale20 covale ? ? B MSE 81 C ? ? ? 1_555 B ASP 82 N ? ? B MSE 78 B ASP 79 1_555 ? ? ? ? ? ? ? 1.322 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 87 ? ARG A 89 ? VAL A 84 ARG A 86 A 2 VAL A 101 ? LEU A 103 ? VAL A 98 LEU A 100 B 1 MSE B 58 ? MSE B 59 ? MSE B 55 MSE B 56 B 2 ARG B 100 ? LEU B 103 ? ARG B 97 LEU B 100 B 3 VAL B 87 ? ARG B 89 ? VAL B 84 ARG B 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 88 ? N THR A 85 O ARG A 102 ? O ARG A 99 B 1 2 N MSE B 58 ? N MSE B 55 O VAL B 101 ? O VAL B 98 B 2 3 O ARG B 102 ? O ARG B 99 N THR B 88 ? N THR B 85 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 203' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 204' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 B 205' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 206' AC7 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 207' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL B 208' AC9 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL B 209' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG A 42 ? ARG A 39 . ? 1_555 ? 2 AC1 2 ARG B 76 ? ARG B 73 . ? 11_656 ? 3 AC2 3 ARG A 76 ? ARG A 73 . ? 4_655 ? 4 AC2 3 GLN A 80 ? GLN A 77 . ? 1_555 ? 5 AC2 3 GLN B 80 ? GLN B 77 . ? 11_656 ? 6 AC3 3 ARG A 89 ? ARG A 86 . ? 1_555 ? 7 AC3 3 ALA A 91 ? ALA A 88 . ? 1_555 ? 8 AC3 3 ARG A 102 ? ARG A 99 . ? 1_555 ? 9 AC4 3 ARG A 102 ? ARG A 99 . ? 1_555 ? 10 AC4 3 THR A 104 ? THR A 101 . ? 1_555 ? 11 AC4 3 ASP A 105 ? ASP A 102 . ? 1_555 ? 12 AC5 3 ALA B 57 ? ALA B 54 . ? 1_555 ? 13 AC5 3 ARG B 62 ? ARG B 59 . ? 1_555 ? 14 AC5 3 ARG B 100 ? ARG B 97 . ? 1_555 ? 15 AC6 2 ARG A 62 ? ARG A 59 . ? 1_555 ? 16 AC6 2 ARG A 100 ? ARG A 97 . ? 1_555 ? 17 AC7 3 ARG A 47 ? ARG A 44 . ? 1_555 ? 18 AC7 3 LEU A 66 ? LEU A 63 . ? 1_555 ? 19 AC7 3 TYR B 19 ? TYR B 16 . ? 1_555 ? 20 AC8 3 TYR A 19 ? TYR A 16 . ? 1_555 ? 21 AC8 3 ARG B 47 ? ARG B 44 . ? 1_555 ? 22 AC8 3 LEU B 66 ? LEU B 63 . ? 1_555 ? 23 AC9 3 ARG B 89 ? ARG B 86 . ? 1_555 ? 24 AC9 3 ALA B 91 ? ALA B 88 . ? 1_555 ? 25 AC9 3 ARG B 102 ? ARG B 99 . ? 1_555 ? # _database_PDB_matrix.entry_id 3CDH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3CDH _atom_sites.fract_transf_matrix[1][1] 0.008055 _atom_sites.fract_transf_matrix[1][2] 0.004651 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009302 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007133 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ASN 5 2 ? ? ? A . n A 1 6 ASP 6 3 ? ? ? A . n A 1 7 THR 7 4 ? ? ? A . n A 1 8 PRO 8 5 ? ? ? A . n A 1 9 ASP 9 6 ? ? ? A . n A 1 10 ASP 10 7 7 ASP ASP A . n A 1 11 THR 11 8 8 THR THR A . n A 1 12 PHE 12 9 9 PHE PHE A . n A 1 13 VAL 13 10 10 VAL VAL A . n A 1 14 SER 14 11 11 SER SER A . n A 1 15 GLY 15 12 12 GLY GLY A . n A 1 16 TYR 16 13 13 TYR TYR A . n A 1 17 LEU 17 14 14 LEU LEU A . n A 1 18 LEU 18 15 15 LEU LEU A . n A 1 19 TYR 19 16 16 TYR TYR A . n A 1 20 LEU 20 17 17 LEU LEU A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 ALA 23 20 20 ALA ALA A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 SER 25 22 22 SER SER A . n A 1 26 GLU 26 23 23 GLU GLU A . n A 1 27 GLU 27 24 24 GLU GLU A . n A 1 28 ALA 28 25 25 ALA ALA A . n A 1 29 SER 29 26 26 SER SER A . n A 1 30 ALA 30 27 27 ALA ALA A . n A 1 31 GLN 31 28 28 GLN GLN A . n A 1 32 PHE 32 29 29 PHE PHE A . n A 1 33 HIS 33 30 30 HIS HIS A . n A 1 34 ASP 34 31 31 ASP ASP A . n A 1 35 HIS 35 32 32 HIS HIS A . n A 1 36 ILE 36 33 33 ILE ILE A . n A 1 37 ARG 37 34 34 ARG ARG A . n A 1 38 ALA 38 35 35 ALA ALA A . n A 1 39 GLN 39 36 36 GLN GLN A . n A 1 40 GLY 40 37 37 GLY GLY A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 ARG 42 39 39 ARG ARG A . n A 1 43 VAL 43 40 40 VAL VAL A . n A 1 44 PRO 44 41 41 PRO PRO A . n A 1 45 GLU 45 42 42 GLU GLU A . n A 1 46 TRP 46 43 43 TRP TRP A . n A 1 47 ARG 47 44 44 ARG ARG A . n A 1 48 VAL 48 45 45 VAL VAL A . n A 1 49 LEU 49 46 46 LEU LEU A . n A 1 50 ALA 50 47 47 ALA ALA A . n A 1 51 CYS 51 48 48 CYS CYS A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 VAL 53 50 50 VAL VAL A . n A 1 54 ASP 54 51 51 ASP ASP A . n A 1 55 ASN 55 52 52 ASN ASN A . n A 1 56 ASP 56 53 53 ASP ASP A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 MSE 58 55 55 MSE MSE A . n A 1 59 MSE 59 56 56 MSE MSE A . n A 1 60 ILE 60 57 57 ILE ILE A . n A 1 61 THR 61 58 58 THR THR A . n A 1 62 ARG 62 59 59 ARG ARG A . n A 1 63 LEU 63 60 60 LEU LEU A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 LYS 65 62 62 LYS LYS A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 SER 67 64 64 SER SER A . n A 1 68 LEU 68 65 65 LEU LEU A . n A 1 69 MSE 69 66 66 MSE MSE A . n A 1 70 GLU 70 67 67 GLU GLU A . n A 1 71 GLN 71 68 68 GLN GLN A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 ARG 73 70 70 ARG ARG A . n A 1 74 MSE 74 71 71 MSE MSE A . n A 1 75 THR 75 72 72 THR THR A . n A 1 76 ARG 76 73 73 ARG ARG A . n A 1 77 ILE 77 74 74 ILE ILE A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 ASP 79 76 76 ASP ASP A . n A 1 80 GLN 80 77 77 GLN GLN A . n A 1 81 MSE 81 78 78 MSE MSE A . n A 1 82 ASP 82 79 79 ASP ASP A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 ARG 84 81 81 ARG ARG A . n A 1 85 GLY 85 82 82 GLY GLY A . n A 1 86 LEU 86 83 83 LEU LEU A . n A 1 87 VAL 87 84 84 VAL VAL A . n A 1 88 THR 88 85 85 THR THR A . n A 1 89 ARG 89 86 86 ARG ARG A . n A 1 90 VAL 90 87 87 VAL VAL A . n A 1 91 ALA 91 88 88 ALA ALA A . n A 1 92 ASP 92 89 ? ? ? A . n A 1 93 ALA 93 90 ? ? ? A . n A 1 94 LYS 94 91 ? ? ? A . n A 1 95 ASP 95 92 ? ? ? A . n A 1 96 LYS 96 93 ? ? ? A . n A 1 97 ARG 97 94 ? ? ? A . n A 1 98 ARG 98 95 95 ARG ARG A . n A 1 99 VAL 99 96 96 VAL VAL A . n A 1 100 ARG 100 97 97 ARG ARG A . n A 1 101 VAL 101 98 98 VAL VAL A . n A 1 102 ARG 102 99 99 ARG ARG A . n A 1 103 LEU 103 100 100 LEU LEU A . n A 1 104 THR 104 101 101 THR THR A . n A 1 105 ASP 105 102 102 ASP ASP A . n A 1 106 ASP 106 103 103 ASP ASP A . n A 1 107 GLY 107 104 104 GLY GLY A . n A 1 108 ARG 108 105 105 ARG ARG A . n A 1 109 ALA 109 106 106 ALA ALA A . n A 1 110 LEU 110 107 107 LEU LEU A . n A 1 111 ALA 111 108 108 ALA ALA A . n A 1 112 GLU 112 109 109 GLU GLU A . n A 1 113 SER 113 110 110 SER SER A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 VAL 115 112 112 VAL VAL A . n A 1 116 ALA 116 113 113 ALA ALA A . n A 1 117 SER 117 114 114 SER SER A . n A 1 118 ALA 118 115 115 ALA ALA A . n A 1 119 ARG 119 116 116 ARG ARG A . n A 1 120 ALA 120 117 117 ALA ALA A . n A 1 121 HIS 121 118 118 HIS HIS A . n A 1 122 GLU 122 119 119 GLU GLU A . n A 1 123 THR 123 120 120 THR THR A . n A 1 124 ARG 124 121 121 ARG ARG A . n A 1 125 LEU 125 122 122 LEU LEU A . n A 1 126 LEU 126 123 123 LEU LEU A . n A 1 127 SER 127 124 124 SER SER A . n A 1 128 ALA 128 125 125 ALA ALA A . n A 1 129 LEU 129 126 126 LEU LEU A . n A 1 130 ALA 130 127 127 ALA ALA A . n A 1 131 ASP 131 128 128 ASP ASP A . n A 1 132 THR 132 129 129 THR THR A . n A 1 133 ASP 133 130 130 ASP ASP A . n A 1 134 ALA 134 131 131 ALA ALA A . n A 1 135 ALA 135 132 132 ALA ALA A . n A 1 136 ARG 136 133 133 ARG ARG A . n A 1 137 ILE 137 134 134 ILE ILE A . n A 1 138 LYS 138 135 135 LYS LYS A . n A 1 139 GLY 139 136 136 GLY GLY A . n A 1 140 VAL 140 137 137 VAL VAL A . n A 1 141 LEU 141 138 138 LEU LEU A . n A 1 142 ARG 142 139 139 ARG ARG A . n A 1 143 THR 143 140 140 THR THR A . n A 1 144 LEU 144 141 141 LEU LEU A . n A 1 145 LEU 145 142 142 LEU LEU A . n A 1 146 ASP 146 143 143 ASP ASP A . n A 1 147 VAL 147 144 144 VAL VAL A . n A 1 148 LEU 148 145 145 LEU LEU A . n A 1 149 ASP 149 146 146 ASP ASP A . n A 1 150 ARG 150 147 ? ? ? A . n A 1 151 PRO 151 148 ? ? ? A . n A 1 152 ARG 152 149 ? ? ? A . n A 1 153 GLU 153 150 ? ? ? A . n A 1 154 SER 154 151 ? ? ? A . n A 1 155 ARG 155 152 ? ? ? A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 ? ? ? B . n B 1 4 MSE 4 1 ? ? ? B . n B 1 5 ASN 5 2 ? ? ? B . n B 1 6 ASP 6 3 ? ? ? B . n B 1 7 THR 7 4 ? ? ? B . n B 1 8 PRO 8 5 ? ? ? B . n B 1 9 ASP 9 6 ? ? ? B . n B 1 10 ASP 10 7 7 ASP ASP B . n B 1 11 THR 11 8 8 THR THR B . n B 1 12 PHE 12 9 9 PHE PHE B . n B 1 13 VAL 13 10 10 VAL VAL B . n B 1 14 SER 14 11 11 SER SER B . n B 1 15 GLY 15 12 12 GLY GLY B . n B 1 16 TYR 16 13 13 TYR TYR B . n B 1 17 LEU 17 14 14 LEU LEU B . n B 1 18 LEU 18 15 15 LEU LEU B . n B 1 19 TYR 19 16 16 TYR TYR B . n B 1 20 LEU 20 17 17 LEU LEU B . n B 1 21 LEU 21 18 18 LEU LEU B . n B 1 22 ALA 22 19 19 ALA ALA B . n B 1 23 ALA 23 20 20 ALA ALA B . n B 1 24 SER 24 21 21 SER SER B . n B 1 25 SER 25 22 22 SER SER B . n B 1 26 GLU 26 23 23 GLU GLU B . n B 1 27 GLU 27 24 24 GLU GLU B . n B 1 28 ALA 28 25 25 ALA ALA B . n B 1 29 SER 29 26 26 SER SER B . n B 1 30 ALA 30 27 27 ALA ALA B . n B 1 31 GLN 31 28 28 GLN GLN B . n B 1 32 PHE 32 29 29 PHE PHE B . n B 1 33 HIS 33 30 30 HIS HIS B . n B 1 34 ASP 34 31 31 ASP ASP B . n B 1 35 HIS 35 32 32 HIS HIS B . n B 1 36 ILE 36 33 33 ILE ILE B . n B 1 37 ARG 37 34 34 ARG ARG B . n B 1 38 ALA 38 35 35 ALA ALA B . n B 1 39 GLN 39 36 36 GLN GLN B . n B 1 40 GLY 40 37 37 GLY GLY B . n B 1 41 LEU 41 38 38 LEU LEU B . n B 1 42 ARG 42 39 39 ARG ARG B . n B 1 43 VAL 43 40 40 VAL VAL B . n B 1 44 PRO 44 41 41 PRO PRO B . n B 1 45 GLU 45 42 42 GLU GLU B . n B 1 46 TRP 46 43 43 TRP TRP B . n B 1 47 ARG 47 44 44 ARG ARG B . n B 1 48 VAL 48 45 45 VAL VAL B . n B 1 49 LEU 49 46 46 LEU LEU B . n B 1 50 ALA 50 47 47 ALA ALA B . n B 1 51 CYS 51 48 48 CYS CYS B . n B 1 52 LEU 52 49 49 LEU LEU B . n B 1 53 VAL 53 50 50 VAL VAL B . n B 1 54 ASP 54 51 51 ASP ASP B . n B 1 55 ASN 55 52 52 ASN ASN B . n B 1 56 ASP 56 53 53 ASP ASP B . n B 1 57 ALA 57 54 54 ALA ALA B . n B 1 58 MSE 58 55 55 MSE MSE B . n B 1 59 MSE 59 56 56 MSE MSE B . n B 1 60 ILE 60 57 57 ILE ILE B . n B 1 61 THR 61 58 58 THR THR B . n B 1 62 ARG 62 59 59 ARG ARG B . n B 1 63 LEU 63 60 60 LEU LEU B . n B 1 64 ALA 64 61 61 ALA ALA B . n B 1 65 LYS 65 62 62 LYS LYS B . n B 1 66 LEU 66 63 63 LEU LEU B . n B 1 67 SER 67 64 64 SER SER B . n B 1 68 LEU 68 65 65 LEU LEU B . n B 1 69 MSE 69 66 66 MSE MSE B . n B 1 70 GLU 70 67 67 GLU GLU B . n B 1 71 GLN 71 68 68 GLN GLN B . n B 1 72 SER 72 69 69 SER SER B . n B 1 73 ARG 73 70 70 ARG ARG B . n B 1 74 MSE 74 71 71 MSE MSE B . n B 1 75 THR 75 72 72 THR THR B . n B 1 76 ARG 76 73 73 ARG ARG B . n B 1 77 ILE 77 74 74 ILE ILE B . n B 1 78 VAL 78 75 75 VAL VAL B . n B 1 79 ASP 79 76 76 ASP ASP B . n B 1 80 GLN 80 77 77 GLN GLN B . n B 1 81 MSE 81 78 78 MSE MSE B . n B 1 82 ASP 82 79 79 ASP ASP B . n B 1 83 ALA 83 80 80 ALA ALA B . n B 1 84 ARG 84 81 81 ARG ARG B . n B 1 85 GLY 85 82 82 GLY GLY B . n B 1 86 LEU 86 83 83 LEU LEU B . n B 1 87 VAL 87 84 84 VAL VAL B . n B 1 88 THR 88 85 85 THR THR B . n B 1 89 ARG 89 86 86 ARG ARG B . n B 1 90 VAL 90 87 87 VAL VAL B . n B 1 91 ALA 91 88 88 ALA ALA B . n B 1 92 ASP 92 89 89 ASP ASP B . n B 1 93 ALA 93 90 90 ALA ALA B . n B 1 94 LYS 94 91 ? ? ? B . n B 1 95 ASP 95 92 ? ? ? B . n B 1 96 LYS 96 93 ? ? ? B . n B 1 97 ARG 97 94 ? ? ? B . n B 1 98 ARG 98 95 95 ARG ARG B . n B 1 99 VAL 99 96 96 VAL VAL B . n B 1 100 ARG 100 97 97 ARG ARG B . n B 1 101 VAL 101 98 98 VAL VAL B . n B 1 102 ARG 102 99 99 ARG ARG B . n B 1 103 LEU 103 100 100 LEU LEU B . n B 1 104 THR 104 101 101 THR THR B . n B 1 105 ASP 105 102 102 ASP ASP B . n B 1 106 ASP 106 103 103 ASP ASP B . n B 1 107 GLY 107 104 104 GLY GLY B . n B 1 108 ARG 108 105 105 ARG ARG B . n B 1 109 ALA 109 106 106 ALA ALA B . n B 1 110 LEU 110 107 107 LEU LEU B . n B 1 111 ALA 111 108 108 ALA ALA B . n B 1 112 GLU 112 109 109 GLU GLU B . n B 1 113 SER 113 110 110 SER SER B . n B 1 114 LEU 114 111 111 LEU LEU B . n B 1 115 VAL 115 112 112 VAL VAL B . n B 1 116 ALA 116 113 113 ALA ALA B . n B 1 117 SER 117 114 114 SER SER B . n B 1 118 ALA 118 115 115 ALA ALA B . n B 1 119 ARG 119 116 116 ARG ARG B . n B 1 120 ALA 120 117 117 ALA ALA B . n B 1 121 HIS 121 118 118 HIS HIS B . n B 1 122 GLU 122 119 119 GLU GLU B . n B 1 123 THR 123 120 120 THR THR B . n B 1 124 ARG 124 121 121 ARG ARG B . n B 1 125 LEU 125 122 122 LEU LEU B . n B 1 126 LEU 126 123 123 LEU LEU B . n B 1 127 SER 127 124 124 SER SER B . n B 1 128 ALA 128 125 125 ALA ALA B . n B 1 129 LEU 129 126 126 LEU LEU B . n B 1 130 ALA 130 127 127 ALA ALA B . n B 1 131 ASP 131 128 128 ASP ASP B . n B 1 132 THR 132 129 129 THR THR B . n B 1 133 ASP 133 130 130 ASP ASP B . n B 1 134 ALA 134 131 131 ALA ALA B . n B 1 135 ALA 135 132 132 ALA ALA B . n B 1 136 ARG 136 133 133 ARG ARG B . n B 1 137 ILE 137 134 134 ILE ILE B . n B 1 138 LYS 138 135 135 LYS LYS B . n B 1 139 GLY 139 136 136 GLY GLY B . n B 1 140 VAL 140 137 137 VAL VAL B . n B 1 141 LEU 141 138 138 LEU LEU B . n B 1 142 ARG 142 139 139 ARG ARG B . n B 1 143 THR 143 140 140 THR THR B . n B 1 144 LEU 144 141 141 LEU LEU B . n B 1 145 LEU 145 142 142 LEU LEU B . n B 1 146 ASP 146 143 143 ASP ASP B . n B 1 147 VAL 147 144 144 VAL VAL B . n B 1 148 LEU 148 145 145 LEU LEU B . n B 1 149 ASP 149 146 146 ASP ASP B . n B 1 150 ARG 150 147 ? ? ? B . n B 1 151 PRO 151 148 ? ? ? B . n B 1 152 ARG 152 149 ? ? ? B . n B 1 153 GLU 153 150 ? ? ? B . n B 1 154 SER 154 151 ? ? ? B . n B 1 155 ARG 155 152 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 58 A MSE 55 ? MET SELENOMETHIONINE 2 A MSE 59 A MSE 56 ? MET SELENOMETHIONINE 3 A MSE 69 A MSE 66 ? MET SELENOMETHIONINE 4 A MSE 74 A MSE 71 ? MET SELENOMETHIONINE 5 A MSE 81 A MSE 78 ? MET SELENOMETHIONINE 6 B MSE 58 B MSE 55 ? MET SELENOMETHIONINE 7 B MSE 59 B MSE 56 ? MET SELENOMETHIONINE 8 B MSE 69 B MSE 66 ? MET SELENOMETHIONINE 9 B MSE 74 B MSE 71 ? MET SELENOMETHIONINE 10 B MSE 81 B MSE 78 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4800 ? 1 MORE -48.3 ? 1 'SSA (A^2)' 14000 ? 2 'ABSA (A^2)' 11520 ? 2 MORE -100.7 ? 2 'SSA (A^2)' 26080 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 140.1860000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 47.9023 15.1887 85.3880 0.0351 0.0311 0.0382 0.0028 0.0005 0.0011 0.0237 0.0143 0.0038 0.0184 0.0095 0.0073 -0.0042 0.0005 0.0074 0.0011 0.0017 -0.0085 -0.0080 0.0020 0.0026 'X-RAY DIFFRACTION' 2 ? refined 43.1655 15.2026 63.7939 0.0320 0.0331 0.0399 0.0010 -0.0011 -0.0003 0.0016 0.0607 0.0063 0.0097 0.0031 0.0196 -0.0128 0.0026 -0.0034 -0.0031 0.0009 0.0041 0.0129 -0.0066 0.0119 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 7 A 10 A 146 A 149 ? 'X-RAY DIFFRACTION' ? 2 2 B 7 B 10 B 146 B 149 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-3000 phasing . ? 1 MLPHARE phasing . ? 2 DM 'model building' . ? 3 SHELXD phasing . ? 4 RESOLVE 'model building' . ? 5 Coot 'model building' . ? 6 REFMAC refinement 5.2.0019 ? 7 SBC-Collect 'data collection' . ? 8 HKL-2000 'data collection' . ? 9 HKL-2000 'data reduction' . ? 10 HKL-2000 'data scaling' . ? 11 DM phasing . ? 12 RESOLVE phasing . ? 13 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C3 B GOL 208 ? ? O B HOH 270 ? ? 1.97 2 1 CB B ASN 52 ? ? O B HOH 240 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE2 B GLU 42 ? ? 1_555 O A HOH 235 ? ? 8_556 2.08 2 1 NH2 A ARG 116 ? B 1_555 OE1 A GLU 119 ? ? 12_556 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 81 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 81 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 81 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.99 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.31 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 28 ? A -48.37 -74.34 2 1 HIS A 30 ? ? -64.87 6.19 3 1 GLN A 36 ? ? -65.84 0.58 4 1 ARG A 133 ? B -93.14 37.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ASN 2 ? A ASN 5 6 1 Y 1 A ASP 3 ? A ASP 6 7 1 Y 1 A THR 4 ? A THR 7 8 1 Y 1 A PRO 5 ? A PRO 8 9 1 Y 1 A ASP 6 ? A ASP 9 10 1 Y 1 A ASP 89 ? A ASP 92 11 1 Y 1 A ALA 90 ? A ALA 93 12 1 Y 1 A LYS 91 ? A LYS 94 13 1 Y 1 A ASP 92 ? A ASP 95 14 1 Y 1 A LYS 93 ? A LYS 96 15 1 Y 1 A ARG 94 ? A ARG 97 16 1 Y 1 A ARG 147 ? A ARG 150 17 1 Y 1 A PRO 148 ? A PRO 151 18 1 Y 1 A ARG 149 ? A ARG 152 19 1 Y 1 A GLU 150 ? A GLU 153 20 1 Y 1 A SER 151 ? A SER 154 21 1 Y 1 A ARG 152 ? A ARG 155 22 1 Y 1 B SER -2 ? B SER 1 23 1 Y 1 B ASN -1 ? B ASN 2 24 1 Y 1 B ALA 0 ? B ALA 3 25 1 Y 1 B MSE 1 ? B MSE 4 26 1 Y 1 B ASN 2 ? B ASN 5 27 1 Y 1 B ASP 3 ? B ASP 6 28 1 Y 1 B THR 4 ? B THR 7 29 1 Y 1 B PRO 5 ? B PRO 8 30 1 Y 1 B ASP 6 ? B ASP 9 31 1 Y 1 B LYS 91 ? B LYS 94 32 1 Y 1 B ASP 92 ? B ASP 95 33 1 Y 1 B LYS 93 ? B LYS 96 34 1 Y 1 B ARG 94 ? B ARG 97 35 1 Y 1 B ARG 147 ? B ARG 150 36 1 Y 1 B PRO 148 ? B PRO 151 37 1 Y 1 B ARG 149 ? B ARG 152 38 1 Y 1 B GLU 150 ? B GLU 153 39 1 Y 1 B SER 151 ? B SER 154 40 1 Y 1 B ARG 152 ? B ARG 155 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 201 201 SO4 SO4 A . D 2 SO4 1 202 202 SO4 SO4 A . E 2 SO4 1 203 203 SO4 SO4 A . F 2 SO4 1 204 204 SO4 SO4 A . G 2 SO4 1 206 206 SO4 SO4 A . H 3 GOL 1 207 207 GOL GOL A . I 2 SO4 1 205 205 SO4 SO4 B . J 3 GOL 1 208 208 GOL GOL B . K 3 GOL 1 209 209 GOL GOL B . L 4 HOH 1 208 1 HOH HOH A . L 4 HOH 2 209 2 HOH HOH A . L 4 HOH 3 210 5 HOH HOH A . L 4 HOH 4 211 6 HOH HOH A . L 4 HOH 5 212 7 HOH HOH A . L 4 HOH 6 213 8 HOH HOH A . L 4 HOH 7 214 9 HOH HOH A . L 4 HOH 8 215 10 HOH HOH A . L 4 HOH 9 216 11 HOH HOH A . L 4 HOH 10 217 12 HOH HOH A . L 4 HOH 11 218 13 HOH HOH A . L 4 HOH 12 219 14 HOH HOH A . L 4 HOH 13 220 15 HOH HOH A . L 4 HOH 14 221 16 HOH HOH A . L 4 HOH 15 222 17 HOH HOH A . L 4 HOH 16 223 24 HOH HOH A . L 4 HOH 17 224 29 HOH HOH A . L 4 HOH 18 225 31 HOH HOH A . L 4 HOH 19 226 34 HOH HOH A . L 4 HOH 20 227 35 HOH HOH A . L 4 HOH 21 228 39 HOH HOH A . L 4 HOH 22 229 47 HOH HOH A . L 4 HOH 23 230 49 HOH HOH A . L 4 HOH 24 231 51 HOH HOH A . L 4 HOH 25 232 53 HOH HOH A . L 4 HOH 26 233 55 HOH HOH A . L 4 HOH 27 234 56 HOH HOH A . L 4 HOH 28 235 57 HOH HOH A . L 4 HOH 29 236 58 HOH HOH A . L 4 HOH 30 237 72 HOH HOH A . L 4 HOH 31 238 73 HOH HOH A . L 4 HOH 32 239 76 HOH HOH A . L 4 HOH 33 240 77 HOH HOH A . L 4 HOH 34 241 79 HOH HOH A . L 4 HOH 35 242 80 HOH HOH A . L 4 HOH 36 243 83 HOH HOH A . L 4 HOH 37 244 84 HOH HOH A . L 4 HOH 38 245 85 HOH HOH A . L 4 HOH 39 246 86 HOH HOH A . L 4 HOH 40 247 87 HOH HOH A . L 4 HOH 41 248 88 HOH HOH A . L 4 HOH 42 249 90 HOH HOH A . L 4 HOH 43 250 91 HOH HOH A . L 4 HOH 44 251 101 HOH HOH A . L 4 HOH 45 252 103 HOH HOH A . L 4 HOH 46 253 107 HOH HOH A . L 4 HOH 47 254 108 HOH HOH A . L 4 HOH 48 255 109 HOH HOH A . L 4 HOH 49 256 110 HOH HOH A . M 4 HOH 1 210 3 HOH HOH B . M 4 HOH 2 211 4 HOH HOH B . M 4 HOH 3 212 18 HOH HOH B . M 4 HOH 4 213 19 HOH HOH B . M 4 HOH 5 214 20 HOH HOH B . M 4 HOH 6 215 21 HOH HOH B . M 4 HOH 7 216 22 HOH HOH B . M 4 HOH 8 217 23 HOH HOH B . M 4 HOH 9 218 25 HOH HOH B . M 4 HOH 10 219 26 HOH HOH B . M 4 HOH 11 220 27 HOH HOH B . M 4 HOH 12 221 28 HOH HOH B . M 4 HOH 13 222 30 HOH HOH B . M 4 HOH 14 223 32 HOH HOH B . M 4 HOH 15 224 33 HOH HOH B . M 4 HOH 16 225 36 HOH HOH B . M 4 HOH 17 226 37 HOH HOH B . M 4 HOH 18 227 38 HOH HOH B . M 4 HOH 19 228 40 HOH HOH B . M 4 HOH 20 229 41 HOH HOH B . M 4 HOH 21 230 42 HOH HOH B . M 4 HOH 22 231 43 HOH HOH B . M 4 HOH 23 232 44 HOH HOH B . M 4 HOH 24 233 45 HOH HOH B . M 4 HOH 25 234 46 HOH HOH B . M 4 HOH 26 235 48 HOH HOH B . M 4 HOH 27 236 50 HOH HOH B . M 4 HOH 28 237 52 HOH HOH B . M 4 HOH 29 238 54 HOH HOH B . M 4 HOH 30 239 59 HOH HOH B . M 4 HOH 31 240 60 HOH HOH B . M 4 HOH 32 241 61 HOH HOH B . M 4 HOH 33 242 62 HOH HOH B . M 4 HOH 34 243 63 HOH HOH B . M 4 HOH 35 244 64 HOH HOH B . M 4 HOH 36 245 65 HOH HOH B . M 4 HOH 37 246 66 HOH HOH B . M 4 HOH 38 247 67 HOH HOH B . M 4 HOH 39 248 68 HOH HOH B . M 4 HOH 40 249 69 HOH HOH B . M 4 HOH 41 250 70 HOH HOH B . M 4 HOH 42 251 71 HOH HOH B . M 4 HOH 43 252 74 HOH HOH B . M 4 HOH 44 253 75 HOH HOH B . M 4 HOH 45 254 78 HOH HOH B . M 4 HOH 46 255 81 HOH HOH B . M 4 HOH 47 256 82 HOH HOH B . M 4 HOH 48 257 89 HOH HOH B . M 4 HOH 49 258 92 HOH HOH B . M 4 HOH 50 259 93 HOH HOH B . M 4 HOH 51 260 94 HOH HOH B . M 4 HOH 52 261 95 HOH HOH B . M 4 HOH 53 262 96 HOH HOH B . M 4 HOH 54 263 97 HOH HOH B . M 4 HOH 55 264 98 HOH HOH B . M 4 HOH 56 265 99 HOH HOH B . M 4 HOH 57 266 100 HOH HOH B . M 4 HOH 58 267 102 HOH HOH B . M 4 HOH 59 268 104 HOH HOH B . M 4 HOH 60 269 105 HOH HOH B . M 4 HOH 61 270 106 HOH HOH B . M 4 HOH 62 271 111 HOH HOH B . M 4 HOH 63 272 112 HOH HOH B . M 4 HOH 64 273 113 HOH HOH B . #