HEADER TRANSFERASE 27-FEB-08 3CDK TITLE CRYSTAL STRUCTURE OF THE CO-EXPRESSED SUCCINYL-COA TRANSFERASE A AND B TITLE 2 COMPLEX FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE SUBUNIT A; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: SUCCINYL COA:3-OXOACID COA-TRANSFERASE, OXCT A; COMPND 5 EC: 2.8.3.5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE SUBUNIT B; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: SUCCINYL COA:3-OXOACID COA-TRANSFERASE, OXCT B; COMPND 11 EC: 2.8.3.5; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: SCOA, YXJD, BSU38990, N15K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG17; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 13 ORGANISM_TAXID: 1423; SOURCE 14 STRAIN: 168; SOURCE 15 GENE: SCOB, YXJE, BSU38980, N15L; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PMCSG21 KEYWDS CO-EXPRESSED COMPLEX, HETERO-TETRAMER, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,M.ZHOU,L.STOLS,W.ESCHENFELDT,M.DONNELLY,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 30-AUG-23 3CDK 1 SEQADV REVDAT 2 24-FEB-09 3CDK 1 VERSN REVDAT 1 18-MAR-08 3CDK 0 JRNL AUTH Y.KIM,M.ZHOU,L.STOLS,W.ESCHENFELDT,M.DONNELLY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE CO-EXPRESSED SUCCINYL-COA JRNL TITL 2 TRANSFERASE A AND B COMPLEX FROM BACILLUS SUBTILIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1417 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6554 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.03000 REMARK 3 B22 (A**2) : 2.07000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.336 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.492 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6696 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9028 ; 1.599 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 874 ; 6.976 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;40.356 ;25.164 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1224 ;22.442 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.168 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1042 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4929 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3433 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4433 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 310 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.306 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4298 ; 2.598 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6888 ; 4.414 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2398 ; 3.260 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2140 ; 5.569 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7400 13.0520 -18.2270 REMARK 3 T TENSOR REMARK 3 T11: -0.0319 T22: 0.0521 REMARK 3 T33: -0.0207 T12: -0.0052 REMARK 3 T13: 0.0139 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.0627 L22: 0.0002 REMARK 3 L33: 0.0242 L12: -0.0037 REMARK 3 L13: -0.0389 L23: 0.0023 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.0103 S13: 0.0181 REMARK 3 S21: 0.0243 S22: 0.0099 S23: -0.0049 REMARK 3 S31: -0.0106 S32: -0.0147 S33: 0.0068 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6930 -14.9430 -19.1630 REMARK 3 T TENSOR REMARK 3 T11: -0.0227 T22: 0.0649 REMARK 3 T33: -0.0217 T12: 0.0017 REMARK 3 T13: 0.0118 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0753 L22: 0.1037 REMARK 3 L33: 0.0629 L12: 0.0523 REMARK 3 L13: -0.0083 L23: -0.0704 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.0151 S13: -0.0195 REMARK 3 S21: -0.0160 S22: 0.0034 S23: 0.0062 REMARK 3 S31: 0.0161 S32: -0.0048 S33: -0.0051 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 231 REMARK 3 ORIGIN FOR THE GROUP (A): -46.0900 6.6390 -31.6650 REMARK 3 T TENSOR REMARK 3 T11: -0.0356 T22: 0.0518 REMARK 3 T33: -0.0328 T12: -0.0026 REMARK 3 T13: 0.0130 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.1402 L22: 0.0086 REMARK 3 L33: 0.0514 L12: 0.0158 REMARK 3 L13: -0.0120 L23: -0.0199 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.0183 S13: -0.0010 REMARK 3 S21: 0.0355 S22: 0.0040 S23: 0.0052 REMARK 3 S31: 0.0174 S32: 0.0037 S33: 0.0121 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 210 REMARK 3 ORIGIN FOR THE GROUP (A): -46.1640 32.7550 -23.6240 REMARK 3 T TENSOR REMARK 3 T11: -0.0116 T22: 0.0729 REMARK 3 T33: 0.0334 T12: 0.0016 REMARK 3 T13: 0.0005 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2882 L22: 0.0000 REMARK 3 L33: 0.0802 L12: -0.0021 REMARK 3 L13: -0.0973 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.0180 S13: 0.1416 REMARK 3 S21: 0.0151 S22: 0.0128 S23: -0.0284 REMARK 3 S31: -0.0547 S32: 0.0142 S33: -0.0014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NATIVE DATA SET HAS BEEN USED FOR REMARK 3 STRUCTURE DETERMINATION. REMARK 4 REMARK 4 3CDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28084 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : 0.14700 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.54300 REMARK 200 R SYM FOR SHELL (I) : 0.54300 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1M3E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-SODIUM CITRATE DIHYDRATE PH REMARK 280 5.6, 20% ISOPROPANOL, 20% PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 ASN A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 ALA A 233 REMARK 465 SER A 234 REMARK 465 GLY A 235 REMARK 465 LYS A 236 REMARK 465 GLY A 237 REMARK 465 GLU A 238 REMARK 465 ALA A 239 REMARK 465 LYS A 240 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 122 REMARK 465 LEU B 214 REMARK 465 ASN B 215 REMARK 465 SER B 216 REMARK 465 SER C 0 REMARK 465 ASN C 1 REMARK 465 ALA C 2 REMARK 465 GLN C 232 REMARK 465 ALA C 233 REMARK 465 SER C 234 REMARK 465 GLY C 235 REMARK 465 LYS C 236 REMARK 465 GLY C 237 REMARK 465 GLU C 238 REMARK 465 ALA C 239 REMARK 465 LYS C 240 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 LYS D 121 REMARK 465 LYS D 148 REMARK 465 HIS D 149 REMARK 465 GLY D 150 REMARK 465 GLU D 151 REMARK 465 GLN D 191 REMARK 465 ASP D 192 REMARK 465 GLY D 193 REMARK 465 VAL D 194 REMARK 465 GLN D 211 REMARK 465 SER D 212 REMARK 465 VAL D 213 REMARK 465 LEU D 214 REMARK 465 ASN D 215 REMARK 465 SER D 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 15 NH1 ARG D 170 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 222 CD GLU C 222 OE2 0.067 REMARK 500 LEU D 190 C LEU D 190 O 0.150 REMARK 500 GLU D 198 CD GLU D 198 OE2 0.260 REMARK 500 GLU D 201 CG GLU D 201 CD 0.121 REMARK 500 GLU D 201 CD GLU D 201 OE1 0.078 REMARK 500 GLU D 201 CD GLU D 201 OE2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 70 33.33 71.13 REMARK 500 LYS A 171 -132.62 48.61 REMARK 500 ASN A 175 -112.54 35.57 REMARK 500 ILE A 205 124.27 -38.48 REMARK 500 GLN B 14 -7.90 -57.04 REMARK 500 GLU B 35 32.67 -93.36 REMARK 500 GLU B 35 32.67 -99.63 REMARK 500 ASN B 115 21.00 -147.17 REMARK 500 SER C 53 147.72 -170.03 REMARK 500 LYS C 70 35.02 73.96 REMARK 500 LYS C 171 -132.51 50.22 REMARK 500 ASN C 175 -110.08 31.66 REMARK 500 LYS D 71 3.76 80.62 REMARK 500 ASN D 115 13.82 -142.90 REMARK 500 LEU D 175 -70.96 -79.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC152 RELATED DB: TARGETDB DBREF 3CDK A 3 240 UNP P42315 SCOA_BACSU 1 238 DBREF 3CDK B 1 216 UNP P42316 SCOB_BACSU 1 216 DBREF 3CDK C 3 240 UNP P42315 SCOA_BACSU 1 238 DBREF 3CDK D 1 216 UNP P42316 SCOB_BACSU 1 216 SEQADV 3CDK SER A 0 UNP P42315 EXPRESSION TAG SEQADV 3CDK ASN A 1 UNP P42315 EXPRESSION TAG SEQADV 3CDK ALA A 2 UNP P42315 EXPRESSION TAG SEQADV 3CDK SER B -2 UNP P42316 EXPRESSION TAG SEQADV 3CDK ASN B -1 UNP P42316 EXPRESSION TAG SEQADV 3CDK ALA B 0 UNP P42316 EXPRESSION TAG SEQADV 3CDK SER C 0 UNP P42315 EXPRESSION TAG SEQADV 3CDK ASN C 1 UNP P42315 EXPRESSION TAG SEQADV 3CDK ALA C 2 UNP P42315 EXPRESSION TAG SEQADV 3CDK SER D -2 UNP P42316 EXPRESSION TAG SEQADV 3CDK ASN D -1 UNP P42316 EXPRESSION TAG SEQADV 3CDK ALA D 0 UNP P42316 EXPRESSION TAG SEQRES 1 A 241 SER ASN ALA MET GLY LYS VAL LEU SER SER SER LYS GLU SEQRES 2 A 241 ALA ALA LYS LEU ILE HIS ASP GLY ASP THR LEU ILE ALA SEQRES 3 A 241 GLY GLY PHE GLY LEU CYS GLY ILE PRO GLU GLN LEU ILE SEQRES 4 A 241 LEU SER ILE ARG ASP GLN GLY VAL LYS ASP LEU THR VAL SEQRES 5 A 241 VAL SER ASN ASN CYS GLY VAL ASP ASP TRP GLY LEU GLY SEQRES 6 A 241 LEU LEU LEU ALA ASN LYS GLN ILE LYS LYS MET ILE ALA SEQRES 7 A 241 SER TYR VAL GLY GLU ASN LYS ILE PHE GLU ARG GLN PHE SEQRES 8 A 241 LEU SER GLY GLU LEU GLU VAL GLU LEU VAL PRO GLN GLY SEQRES 9 A 241 THR LEU ALA GLU ARG ILE ARG ALA GLY GLY ALA GLY ILE SEQRES 10 A 241 PRO GLY PHE TYR THR ALA THR GLY VAL GLY THR SER ILE SEQRES 11 A 241 ALA GLU GLY LYS GLU HIS LYS THR PHE GLY GLY ARG THR SEQRES 12 A 241 TYR VAL LEU GLU ARG GLY ILE THR GLY ASP VAL ALA ILE SEQRES 13 A 241 VAL LYS ALA TRP LYS ALA ASP THR MET GLY ASN LEU ILE SEQRES 14 A 241 PHE ARG LYS THR ALA ARG ASN PHE ASN PRO ILE ALA ALA SEQRES 15 A 241 MET ALA GLY LYS ILE THR ILE ALA GLU ALA GLU GLU ILE SEQRES 16 A 241 VAL GLU ALA GLY GLU LEU ASP PRO ASP HIS ILE HIS THR SEQRES 17 A 241 PRO GLY ILE TYR VAL GLN HIS VAL VAL LEU GLY ALA SER SEQRES 18 A 241 GLN GLU LYS ARG ILE GLU LYS ARG THR VAL GLN GLN ALA SEQRES 19 A 241 SER GLY LYS GLY GLU ALA LYS SEQRES 1 B 219 SER ASN ALA MET LYS GLU ALA ARG LYS ARG MET VAL LYS SEQRES 2 B 219 ARG ALA VAL GLN GLU ILE LYS ASP GLY MET ASN VAL ASN SEQRES 3 B 219 LEU GLY ILE GLY MET PRO THR LEU VAL ALA ASN GLU ILE SEQRES 4 B 219 PRO ASP GLY VAL HIS VAL MET LEU GLN SER GLU ASN GLY SEQRES 5 B 219 LEU LEU GLY ILE GLY PRO TYR PRO LEU GLU GLY THR GLU SEQRES 6 B 219 ASP ALA ASP LEU ILE ASN ALA GLY LYS GLU THR ILE THR SEQRES 7 B 219 GLU VAL THR GLY ALA SER TYR PHE ASP SER ALA GLU SER SEQRES 8 B 219 PHE ALA MET ILE ARG GLY GLY HIS ILE ASP LEU ALA ILE SEQRES 9 B 219 LEU GLY GLY MET GLU VAL SER GLU GLN GLY ASP LEU ALA SEQRES 10 B 219 ASN TRP MET ILE PRO GLY LYS MET VAL LYS GLY MET GLY SEQRES 11 B 219 GLY ALA MET ASP LEU VAL ASN GLY ALA LYS ARG ILE VAL SEQRES 12 B 219 VAL ILE MET GLU HIS VAL ASN LYS HIS GLY GLU SER LYS SEQRES 13 B 219 VAL LYS LYS THR CYS SER LEU PRO LEU THR GLY GLN LYS SEQRES 14 B 219 VAL VAL HIS ARG LEU ILE THR ASP LEU ALA VAL PHE ASP SEQRES 15 B 219 PHE VAL ASN GLY ARG MET THR LEU THR GLU LEU GLN ASP SEQRES 16 B 219 GLY VAL THR ILE GLU GLU VAL TYR GLU LYS THR GLU ALA SEQRES 17 B 219 ASP PHE ALA VAL SER GLN SER VAL LEU ASN SER SEQRES 1 C 241 SER ASN ALA MET GLY LYS VAL LEU SER SER SER LYS GLU SEQRES 2 C 241 ALA ALA LYS LEU ILE HIS ASP GLY ASP THR LEU ILE ALA SEQRES 3 C 241 GLY GLY PHE GLY LEU CYS GLY ILE PRO GLU GLN LEU ILE SEQRES 4 C 241 LEU SER ILE ARG ASP GLN GLY VAL LYS ASP LEU THR VAL SEQRES 5 C 241 VAL SER ASN ASN CYS GLY VAL ASP ASP TRP GLY LEU GLY SEQRES 6 C 241 LEU LEU LEU ALA ASN LYS GLN ILE LYS LYS MET ILE ALA SEQRES 7 C 241 SER TYR VAL GLY GLU ASN LYS ILE PHE GLU ARG GLN PHE SEQRES 8 C 241 LEU SER GLY GLU LEU GLU VAL GLU LEU VAL PRO GLN GLY SEQRES 9 C 241 THR LEU ALA GLU ARG ILE ARG ALA GLY GLY ALA GLY ILE SEQRES 10 C 241 PRO GLY PHE TYR THR ALA THR GLY VAL GLY THR SER ILE SEQRES 11 C 241 ALA GLU GLY LYS GLU HIS LYS THR PHE GLY GLY ARG THR SEQRES 12 C 241 TYR VAL LEU GLU ARG GLY ILE THR GLY ASP VAL ALA ILE SEQRES 13 C 241 VAL LYS ALA TRP LYS ALA ASP THR MET GLY ASN LEU ILE SEQRES 14 C 241 PHE ARG LYS THR ALA ARG ASN PHE ASN PRO ILE ALA ALA SEQRES 15 C 241 MET ALA GLY LYS ILE THR ILE ALA GLU ALA GLU GLU ILE SEQRES 16 C 241 VAL GLU ALA GLY GLU LEU ASP PRO ASP HIS ILE HIS THR SEQRES 17 C 241 PRO GLY ILE TYR VAL GLN HIS VAL VAL LEU GLY ALA SER SEQRES 18 C 241 GLN GLU LYS ARG ILE GLU LYS ARG THR VAL GLN GLN ALA SEQRES 19 C 241 SER GLY LYS GLY GLU ALA LYS SEQRES 1 D 219 SER ASN ALA MET LYS GLU ALA ARG LYS ARG MET VAL LYS SEQRES 2 D 219 ARG ALA VAL GLN GLU ILE LYS ASP GLY MET ASN VAL ASN SEQRES 3 D 219 LEU GLY ILE GLY MET PRO THR LEU VAL ALA ASN GLU ILE SEQRES 4 D 219 PRO ASP GLY VAL HIS VAL MET LEU GLN SER GLU ASN GLY SEQRES 5 D 219 LEU LEU GLY ILE GLY PRO TYR PRO LEU GLU GLY THR GLU SEQRES 6 D 219 ASP ALA ASP LEU ILE ASN ALA GLY LYS GLU THR ILE THR SEQRES 7 D 219 GLU VAL THR GLY ALA SER TYR PHE ASP SER ALA GLU SER SEQRES 8 D 219 PHE ALA MET ILE ARG GLY GLY HIS ILE ASP LEU ALA ILE SEQRES 9 D 219 LEU GLY GLY MET GLU VAL SER GLU GLN GLY ASP LEU ALA SEQRES 10 D 219 ASN TRP MET ILE PRO GLY LYS MET VAL LYS GLY MET GLY SEQRES 11 D 219 GLY ALA MET ASP LEU VAL ASN GLY ALA LYS ARG ILE VAL SEQRES 12 D 219 VAL ILE MET GLU HIS VAL ASN LYS HIS GLY GLU SER LYS SEQRES 13 D 219 VAL LYS LYS THR CYS SER LEU PRO LEU THR GLY GLN LYS SEQRES 14 D 219 VAL VAL HIS ARG LEU ILE THR ASP LEU ALA VAL PHE ASP SEQRES 15 D 219 PHE VAL ASN GLY ARG MET THR LEU THR GLU LEU GLN ASP SEQRES 16 D 219 GLY VAL THR ILE GLU GLU VAL TYR GLU LYS THR GLU ALA SEQRES 17 D 219 ASP PHE ALA VAL SER GLN SER VAL LEU ASN SER FORMUL 5 HOH *115(H2 O) HELIX 1 1 SER A 9 LYS A 15 1 7 HELIX 2 2 PRO A 34 GLY A 45 1 12 HELIX 3 3 LEU A 63 ASN A 69 1 7 HELIX 4 4 ASN A 83 LEU A 91 1 9 HELIX 5 5 PRO A 101 GLY A 115 1 15 HELIX 6 6 THR A 127 GLU A 131 5 5 HELIX 7 7 ARG A 170 ARG A 174 5 5 HELIX 8 8 PHE A 176 ALA A 183 1 8 HELIX 9 9 PRO A 208 VAL A 212 5 5 HELIX 10 10 MET B 1 GLN B 14 1 14 HELIX 11 11 GLY B 27 ASN B 34 5 8 HELIX 12 12 ASP B 84 GLY B 94 1 11 HELIX 13 13 GLY B 128 ALA B 136 1 9 HELIX 14 14 THR B 195 LYS B 202 1 8 HELIX 15 15 SER C 9 LYS C 15 1 7 HELIX 16 16 PRO C 34 GLY C 45 1 12 HELIX 17 17 LEU C 63 ASN C 69 1 7 HELIX 18 18 ASN C 83 SER C 92 1 10 HELIX 19 19 PRO C 101 GLY C 115 1 15 HELIX 20 20 THR C 127 GLU C 131 5 5 HELIX 21 21 ARG C 170 ARG C 174 5 5 HELIX 22 22 PHE C 176 ALA C 183 1 8 HELIX 23 23 PRO C 208 VAL C 212 5 5 HELIX 24 24 LYS D 2 GLN D 14 1 13 HELIX 25 25 GLY D 27 ILE D 36 5 10 HELIX 26 26 ASP D 84 GLY D 94 1 11 HELIX 27 27 GLY D 128 ALA D 136 1 9 HELIX 28 28 GLU D 197 THR D 203 1 7 SHEET 1 A 6 GLU A 96 LEU A 99 0 SHEET 2 A 6 ILE A 72 ALA A 77 1 N MET A 75 O GLU A 98 SHEET 3 A 6 LEU A 49 SER A 53 1 N VAL A 51 O ILE A 76 SHEET 4 A 6 THR A 22 ALA A 25 1 N LEU A 23 O VAL A 52 SHEET 5 A 6 GLY A 151 ASP A 162 1 O ILE A 155 N ILE A 24 SHEET 6 A 6 LEU A 167 ILE A 168 -1 O ILE A 168 N LYS A 160 SHEET 1 B 7 GLU A 96 LEU A 99 0 SHEET 2 B 7 ILE A 72 ALA A 77 1 N MET A 75 O GLU A 98 SHEET 3 B 7 LEU A 49 SER A 53 1 N VAL A 51 O ILE A 76 SHEET 4 B 7 THR A 22 ALA A 25 1 N LEU A 23 O VAL A 52 SHEET 5 B 7 GLY A 151 ASP A 162 1 O ILE A 155 N ILE A 24 SHEET 6 B 7 GLY A 184 VAL A 195 1 O GLU A 190 N ALA A 158 SHEET 7 B 7 HIS A 214 LEU A 217 1 O VAL A 216 N ALA A 189 SHEET 1 C 3 GLY A 118 THR A 121 0 SHEET 2 C 3 ARG A 141 ARG A 147 -1 O VAL A 144 N THR A 121 SHEET 3 C 3 HIS A 135 PHE A 138 -1 N LYS A 136 O TYR A 143 SHEET 1 D10 THR B 75 TYR B 82 0 SHEET 2 D10 LEU B 50 GLY B 54 -1 N GLY B 54 O THR B 75 SHEET 3 D10 MET B 43 SER B 46 -1 N SER B 46 O LEU B 50 SHEET 4 D10 ASN B 21 LEU B 24 1 N VAL B 22 O GLN B 45 SHEET 5 D10 LEU B 99 LEU B 102 1 O LEU B 99 N ASN B 23 SHEET 6 D10 ARG B 138 ILE B 142 1 O VAL B 140 N LEU B 102 SHEET 7 D10 ARG B 170 ILE B 172 1 O ILE B 172 N VAL B 141 SHEET 8 D10 ALA B 176 VAL B 181 -1 O PHE B 178 N LEU B 171 SHEET 9 D10 ARG B 184 LEU B 190 -1 O THR B 188 N VAL B 177 SHEET 10 D10 ALA B 208 VAL B 209 1 O ALA B 208 N LEU B 187 SHEET 1 E 3 LEU B 113 ALA B 114 0 SHEET 2 E 3 GLU B 106 SER B 108 -1 N GLU B 106 O ALA B 114 SHEET 3 E 3 VAL B 154 LYS B 155 1 O LYS B 155 N VAL B 107 SHEET 1 F 6 GLU C 96 LEU C 99 0 SHEET 2 F 6 ILE C 72 ALA C 77 1 N MET C 75 O GLU C 98 SHEET 3 F 6 LEU C 49 VAL C 52 1 N VAL C 51 O ILE C 76 SHEET 4 F 6 THR C 22 ALA C 25 1 N LEU C 23 O VAL C 52 SHEET 5 F 6 GLY C 151 ASP C 162 1 O VAL C 153 N ILE C 24 SHEET 6 F 6 LEU C 167 ILE C 168 -1 O ILE C 168 N LYS C 160 SHEET 1 G 7 GLU C 96 LEU C 99 0 SHEET 2 G 7 ILE C 72 ALA C 77 1 N MET C 75 O GLU C 98 SHEET 3 G 7 LEU C 49 VAL C 52 1 N VAL C 51 O ILE C 76 SHEET 4 G 7 THR C 22 ALA C 25 1 N LEU C 23 O VAL C 52 SHEET 5 G 7 GLY C 151 ASP C 162 1 O VAL C 153 N ILE C 24 SHEET 6 G 7 GLY C 184 VAL C 195 1 O GLU C 190 N ALA C 158 SHEET 7 G 7 HIS C 214 LEU C 217 1 O VAL C 216 N ALA C 191 SHEET 1 H 3 GLY C 118 THR C 121 0 SHEET 2 H 3 ARG C 141 ARG C 147 -1 O GLU C 146 N PHE C 119 SHEET 3 H 3 HIS C 135 PHE C 138 -1 N LYS C 136 O TYR C 143 SHEET 1 I 9 THR D 75 TYR D 82 0 SHEET 2 I 9 LEU D 50 GLY D 54 -1 N GLY D 54 O THR D 75 SHEET 3 I 9 MET D 43 SER D 46 -1 N SER D 46 O LEU D 50 SHEET 4 I 9 ASN D 21 LEU D 24 1 N VAL D 22 O GLN D 45 SHEET 5 I 9 LEU D 99 LEU D 102 1 O LEU D 99 N ASN D 23 SHEET 6 I 9 ILE D 139 ILE D 142 1 O VAL D 140 N ALA D 100 SHEET 7 I 9 ARG D 170 ILE D 172 1 O ILE D 172 N VAL D 141 SHEET 8 I 9 VAL D 177 VAL D 181 -1 O PHE D 178 N LEU D 171 SHEET 9 I 9 ARG D 184 GLU D 189 -1 O THR D 186 N ASP D 179 SHEET 1 J 2 GLU D 106 VAL D 107 0 SHEET 2 J 2 LEU D 113 ALA D 114 -1 O ALA D 114 N GLU D 106 CRYST1 69.337 70.404 97.996 90.00 106.31 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014422 0.000000 0.004220 0.00000 SCALE2 0.000000 0.014204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010632 0.00000