HEADER TRANSCRIPTION REGULATOR 27-FEB-08 3CDL TITLE CRYSTAL STRUCTURE OF A TETR FAMILY TRANSCRIPTIONAL REGULATOR FROM TITLE 2 PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR AEFR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO; SOURCE 3 ORGANISM_TAXID: 223283; SOURCE 4 STRAIN: DC3000; SOURCE 5 GENE: AEFR, PSPTO3549; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS APC88582, TETR, PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, DNA-BINDING, TRANSCRIPTION, KEYWDS 4 TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,L.BIGELOW,M.GU,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 3CDL 1 VERSN REVDAT 2 24-FEB-09 3CDL 1 VERSN REVDAT 1 18-MAR-08 3CDL 0 JRNL AUTH K.TAN,L.BIGELOW,M.GU,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A TETR FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 13723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 728 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.729 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.316 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3096 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4194 ; 1.521 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 6.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;37.266 ;23.377 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 529 ;22.442 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.993 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2349 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1513 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2125 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 121 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1916 ; 0.660 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3008 ; 1.062 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1360 ; 1.490 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1185 ; 2.311 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 66.7850 -0.1720 -36.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.2321 T22: -0.1541 REMARK 3 T33: 0.2658 T12: -0.0644 REMARK 3 T13: 0.1682 T23: -0.1041 REMARK 3 L TENSOR REMARK 3 L11: 6.2147 L22: 5.8872 REMARK 3 L33: 7.5259 L12: -2.7221 REMARK 3 L13: -4.5265 L23: 1.1785 REMARK 3 S TENSOR REMARK 3 S11: -0.8541 S12: 0.1458 S13: -1.5683 REMARK 3 S21: 0.0584 S22: -0.0543 S23: 0.6831 REMARK 3 S31: 1.5234 S32: -0.1649 S33: 0.9084 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 59.5150 14.9000 -13.4030 REMARK 3 T TENSOR REMARK 3 T11: -0.2058 T22: -0.2100 REMARK 3 T33: -0.1016 T12: 0.0274 REMARK 3 T13: -0.0693 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.5070 L22: 0.6388 REMARK 3 L33: 4.2513 L12: 0.5151 REMARK 3 L13: -1.3021 L23: -0.8103 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.0137 S13: -0.2331 REMARK 3 S21: 0.0007 S22: -0.0931 S23: -0.0169 REMARK 3 S31: 0.2871 S32: -0.0260 S33: 0.1328 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): 58.7650 32.2040 -46.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.2017 REMARK 3 T33: 0.0706 T12: 0.2129 REMARK 3 T13: 0.0908 T23: 0.1432 REMARK 3 L TENSOR REMARK 3 L11: 5.5585 L22: 3.9098 REMARK 3 L33: 9.2492 L12: -0.7388 REMARK 3 L13: -0.5339 L23: -1.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.5587 S12: 0.8202 S13: 0.8080 REMARK 3 S21: -0.1172 S22: -0.1367 S23: -0.1908 REMARK 3 S31: -0.8724 S32: -0.6242 S33: -0.4219 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): 55.8450 31.5540 -19.1450 REMARK 3 T TENSOR REMARK 3 T11: -0.1247 T22: -0.2095 REMARK 3 T33: -0.0233 T12: 0.0501 REMARK 3 T13: -0.0262 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.1320 L22: 1.2687 REMARK 3 L33: 4.3934 L12: -0.1884 REMARK 3 L13: -0.7252 L23: 0.1857 REMARK 3 S TENSOR REMARK 3 S11: 0.1947 S12: 0.0945 S13: 0.4467 REMARK 3 S21: 0.0553 S22: 0.0350 S23: -0.0111 REMARK 3 S31: -0.6490 S32: -0.0332 S33: -0.2297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB046645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915, 0.97937 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 33.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 25% PEG 3350, REMARK 280 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.15250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.70450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.15250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.70450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 PRO A 66 REMARK 465 PRO A 67 REMARK 465 GLN A 68 REMARK 465 SER A 69 REMARK 465 ALA A 122 REMARK 465 ARG A 123 REMARK 465 ILE A 124 REMARK 465 ASN A 125 REMARK 465 GLU A 126 REMARK 465 ARG A 127 REMARK 465 GLY A 200 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 ALA B 65 REMARK 465 PRO B 66 REMARK 465 PRO B 67 REMARK 465 GLN B 68 REMARK 465 SER B 69 REMARK 465 GLU B 70 REMARK 465 VAL B 71 REMARK 465 VAL B 72 REMARK 465 ARG B 127 REMARK 465 GLU B 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 41 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 PRO B 75 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 4 -6.96 -142.26 REMARK 500 PRO A 48 -18.10 -47.08 REMARK 500 VAL A 71 -15.24 56.17 REMARK 500 PHE A 165 -68.23 -125.81 REMARK 500 PHE A 171 35.90 -144.23 REMARK 500 LYS B 40 -39.13 -37.10 REMARK 500 LEU B 61 -84.94 -76.27 REMARK 500 TRP B 62 3.46 -69.24 REMARK 500 PRO B 75 -86.69 -24.32 REMARK 500 PHE B 165 -74.24 -130.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 76 VAL B 77 144.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 71 23.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC88582 RELATED DB: TARGETDB DBREF 3CDL A 1 200 UNP Q87Z81 Q87Z81_PSESM 1 200 DBREF 3CDL B 1 200 UNP Q87Z81 Q87Z81_PSESM 1 200 SEQADV 3CDL SER A -2 UNP Q87Z81 EXPRESSION TAG SEQADV 3CDL ASN A -1 UNP Q87Z81 EXPRESSION TAG SEQADV 3CDL ALA A 0 UNP Q87Z81 EXPRESSION TAG SEQADV 3CDL SER B -2 UNP Q87Z81 EXPRESSION TAG SEQADV 3CDL ASN B -1 UNP Q87Z81 EXPRESSION TAG SEQADV 3CDL ALA B 0 UNP Q87Z81 EXPRESSION TAG SEQRES 1 A 203 SER ASN ALA MSE ARG LEU THR ASP GLN LYS ARG GLU SER SEQRES 2 A 203 ILE VAL GLN ALA ALA ILE ALA GLU PHE GLY ASP ARG GLY SEQRES 3 A 203 PHE GLU ILE THR SER MSE ASP ARG ILE ALA ALA ARG ALA SEQRES 4 A 203 GLU VAL SER LYS ARG THR VAL TYR ASN HIS PHE PRO SER SEQRES 5 A 203 LYS GLU GLU LEU PHE ALA GLU MSE LEU GLN ARG LEU TRP SEQRES 6 A 203 ASN CYS ALA PRO PRO GLN SER GLU VAL VAL TYR ARG PRO SEQRES 7 A 203 LEU VAL SER LEU ARG GLU GLN LEU LEU GLU LEU LEU TRP SEQRES 8 A 203 GLY LYS MSE ARG ASN LEU THR ASP SER SER PHE LEU ASP SEQRES 9 A 203 LEU ALA ARG VAL VAL VAL GLY ALA THR ILE HIS SER PRO SEQRES 10 A 203 GLU ARG ALA GLN VAL TRP LEU ALA ARG ILE ASN GLU ARG SEQRES 11 A 203 GLU GLU THR PHE SER ALA TRP ILE ARG ALA ALA GLN LYS SEQRES 12 A 203 ASP GLY ARG LEU LYS PRO VAL ASP PRO GLY PHE ALA ALA SEQRES 13 A 203 THR GLN MSE HIS ALA LEU LEU LYS SER PHE ALA PHE TRP SEQRES 14 A 203 PRO GLN VAL THR PHE ASN ALA ALA LEU LEU THR PRO GLN SEQRES 15 A 203 GLU GLN SER ASN VAL VAL GLU SER ALA LEU ASN MSE PHE SEQRES 16 A 203 LEU GLY TRP TYR GLU ILE PRO GLY SEQRES 1 B 203 SER ASN ALA MSE ARG LEU THR ASP GLN LYS ARG GLU SER SEQRES 2 B 203 ILE VAL GLN ALA ALA ILE ALA GLU PHE GLY ASP ARG GLY SEQRES 3 B 203 PHE GLU ILE THR SER MSE ASP ARG ILE ALA ALA ARG ALA SEQRES 4 B 203 GLU VAL SER LYS ARG THR VAL TYR ASN HIS PHE PRO SER SEQRES 5 B 203 LYS GLU GLU LEU PHE ALA GLU MSE LEU GLN ARG LEU TRP SEQRES 6 B 203 ASN CYS ALA PRO PRO GLN SER GLU VAL VAL TYR ARG PRO SEQRES 7 B 203 LEU VAL SER LEU ARG GLU GLN LEU LEU GLU LEU LEU TRP SEQRES 8 B 203 GLY LYS MSE ARG ASN LEU THR ASP SER SER PHE LEU ASP SEQRES 9 B 203 LEU ALA ARG VAL VAL VAL GLY ALA THR ILE HIS SER PRO SEQRES 10 B 203 GLU ARG ALA GLN VAL TRP LEU ALA ARG ILE ASN GLU ARG SEQRES 11 B 203 GLU GLU THR PHE SER ALA TRP ILE ARG ALA ALA GLN LYS SEQRES 12 B 203 ASP GLY ARG LEU LYS PRO VAL ASP PRO GLY PHE ALA ALA SEQRES 13 B 203 THR GLN MSE HIS ALA LEU LEU LYS SER PHE ALA PHE TRP SEQRES 14 B 203 PRO GLN VAL THR PHE ASN ALA ALA LEU LEU THR PRO GLN SEQRES 15 B 203 GLU GLN SER ASN VAL VAL GLU SER ALA LEU ASN MSE PHE SEQRES 16 B 203 LEU GLY TRP TYR GLU ILE PRO GLY MODRES 3CDL MSE A 29 MET SELENOMETHIONINE MODRES 3CDL MSE A 57 MET SELENOMETHIONINE MODRES 3CDL MSE A 91 MET SELENOMETHIONINE MODRES 3CDL MSE A 156 MET SELENOMETHIONINE MODRES 3CDL MSE A 191 MET SELENOMETHIONINE MODRES 3CDL MSE B 29 MET SELENOMETHIONINE MODRES 3CDL MSE B 57 MET SELENOMETHIONINE MODRES 3CDL MSE B 91 MET SELENOMETHIONINE MODRES 3CDL MSE B 156 MET SELENOMETHIONINE MODRES 3CDL MSE B 191 MET SELENOMETHIONINE HET MSE A 29 8 HET MSE A 57 8 HET MSE A 91 8 HET MSE A 156 8 HET MSE A 191 8 HET MSE B 29 8 HET MSE B 57 8 HET MSE B 91 8 HET MSE B 156 13 HET MSE B 191 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 HOH *41(H2 O) HELIX 1 1 THR A 4 GLY A 23 1 20 HELIX 2 2 SER A 28 ALA A 36 1 9 HELIX 3 3 SER A 39 ASN A 45 1 7 HELIX 4 4 SER A 49 CYS A 64 1 16 HELIX 5 5 SER A 78 THR A 95 1 18 HELIX 6 6 ASP A 96 HIS A 112 1 17 HELIX 7 7 SER A 113 GLN A 118 1 6 HELIX 8 8 GLU A 128 ASP A 141 1 14 HELIX 9 9 ASP A 148 PHE A 165 1 18 HELIX 10 10 PHE A 165 ASN A 172 1 8 HELIX 11 11 THR A 177 GLU A 197 1 21 HELIX 12 12 ASP B 5 ARG B 22 1 18 HELIX 13 13 SER B 28 GLU B 37 1 10 HELIX 14 14 SER B 39 PHE B 47 1 9 HELIX 15 15 SER B 49 TRP B 62 1 14 HELIX 16 16 SER B 78 THR B 95 1 18 HELIX 17 17 ASP B 96 HIS B 112 1 17 HELIX 18 18 SER B 113 ARG B 123 1 11 HELIX 19 19 GLU B 129 ASP B 141 1 13 HELIX 20 20 ASP B 148 PHE B 165 1 18 HELIX 21 21 PHE B 165 ASN B 172 1 8 HELIX 22 22 THR B 177 GLU B 197 1 21 LINK C SER A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N ASP A 30 1555 1555 1.33 LINK C GLU A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N LEU A 58 1555 1555 1.33 LINK C LYS A 90 N MSE A 91 1555 1555 1.34 LINK C MSE A 91 N ARG A 92 1555 1555 1.33 LINK C GLN A 155 N MSE A 156 1555 1555 1.33 LINK C MSE A 156 N HIS A 157 1555 1555 1.34 LINK C ASN A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N PHE A 192 1555 1555 1.32 LINK C SER B 28 N MSE B 29 1555 1555 1.33 LINK C MSE B 29 N ASP B 30 1555 1555 1.33 LINK C GLU B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N LEU B 58 1555 1555 1.33 LINK C LYS B 90 N MSE B 91 1555 1555 1.33 LINK C MSE B 91 N ARG B 92 1555 1555 1.32 LINK C GLN B 155 N MSE B 156 1555 1555 1.34 LINK C MSE B 156 N HIS B 157 1555 1555 1.34 LINK C ASN B 190 N MSE B 191 1555 1555 1.32 LINK C MSE B 191 N PHE B 192 1555 1555 1.33 CRYST1 132.305 53.409 55.829 90.00 113.25 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007558 0.000000 0.003247 0.00000 SCALE2 0.000000 0.018723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019495 0.00000