HEADER TRANSFERASE/VIRAL PROTEIN 27-FEB-08 3CDW TITLE CRYSTAL STRUCTURE OF COXSACKIEVIRUS B3 RNA-DEPENDENT RNA POLYMERASE TITLE 2 (3DPOL) IN COMPLEX WITH PROTEIN PRIMER VPG AND A PYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE 3D-POL; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.48; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN 3B; COMPND 8 CHAIN: H; COMPND 9 SYNONYM: VPG; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS B3; SOURCE 3 ORGANISM_TAXID: 103903; SOURCE 4 STRAIN: NANCY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(PLYSS); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: PEPTIDE SYNTHESIS KEYWDS COXSACKIEVIRUS, RNA-DEPENDENT RNA POLYMERASE, PROTEIN PRIMER, VPG, KEYWDS 2 VIZIER VIRAL ENZYMES INVOLVED IN REPLICATION, TRANSFERASE-VIRAL KEYWDS 3 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.GRUEZ,B.SELISKO,M.ROBERTS,G.BRICOGNE,C.BUSSETTA,B.CANARD REVDAT 5 01-NOV-23 3CDW 1 REMARK SEQADV REVDAT 4 13-JUL-11 3CDW 1 VERSN REVDAT 3 24-FEB-09 3CDW 1 VERSN REVDAT 2 28-OCT-08 3CDW 1 JRNL REVDAT 1 22-JUL-08 3CDW 0 JRNL AUTH A.GRUEZ,B.SELISKO,M.ROBERTS,G.BRICOGNE,C.BUSSETTA,I.JABAFI, JRNL AUTH 2 B.COUTARD,A.M.DE PALMA,J.NEYTS,B.CANARD JRNL TITL THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS B3 RNA-DEPENDENT RNA JRNL TITL 2 POLYMERASE IN COMPLEX WITH ITS PROTEIN PRIMER VPG CONFIRMS JRNL TITL 3 THE EXISTENCE OF A SECOND VPG BINDING SITE ON PICORNAVIRIDAE JRNL TITL 4 POLYMERASES JRNL REF J.VIROL. V. 82 9577 2008 JRNL REFN ISSN 0022-538X JRNL PMID 18632861 JRNL DOI 10.1128/JVI.00631-08 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.3.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1451 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4486 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2162 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4246 REMARK 3 BIN R VALUE (WORKING SET) : 0.2073 REMARK 3 BIN FREE R VALUE : 0.2553 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.35 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 240 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3819 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 202 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.34455 REMARK 3 B22 (A**2) : -4.34455 REMARK 3 B33 (A**2) : 8.68909 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.272 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4173 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 5551 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 802 ; 0.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 93 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 571 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 4173 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 88 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : DIAMOND (111) - GE (220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 27.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.450 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3CDU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1M CAPS, 0.2M REMARK 280 LITHIUM SULFATE, PH 10, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.79550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.10650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.10650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 214.19325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.10650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.10650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.39775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.10650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.10650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 214.19325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.10650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.10650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.39775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 142.79550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 1 REMARK 465 ALA H 2 REMARK 465 TYR H 3 REMARK 465 THR H 4 REMARK 465 GLY H 5 REMARK 465 VAL H 6 REMARK 465 LEU H 16 REMARK 465 ARG H 17 REMARK 465 GLN H 18 REMARK 465 ALA H 19 REMARK 465 LYS H 20 REMARK 465 VAL H 21 REMARK 465 GLN H 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 273 NE2 HIS A 280 2.06 REMARK 500 O ASN A 425 O ACT A 478 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 659 O HOH A 659 8555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 5 130.37 -170.96 REMARK 500 ASN A 67 77.71 -100.08 REMARK 500 ARG A 277 -112.23 52.22 REMARK 500 PHE A 364 76.08 -69.22 REMARK 500 LYS A 376 -2.90 74.82 REMARK 500 ASP A 407 98.19 -165.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 469 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 470 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 483 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 490 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 491 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 493 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 494 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 495 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 496 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 497 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 498 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CDU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COXSACKIEVIRUS B3 RNA-DEPENDENT RNA POLYMERASE REMARK 900 (3DPOL) IN COMPLEX WITH A PYROPHOSPHATE REMARK 900 RELATED ID: 2ILZ RELATED DB: PDB REMARK 900 POLIOVIRUS 3DPOL IN COMPLEX WITH GTP REMARK 900 RELATED ID: 2F8E RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS 3DPOL IN COMPLEX WITH URIDYLATED VPG REMARK 900 RELATED ID: 2E9Z RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS 3DPOL IN COMPLEX WITH PRIMER-TEMPLATE, REMARK 900 UTP AND A PYROPHOSPHATE REMARK 900 RELATED ID: 1XR5 RELATED DB: PDB REMARK 900 RHINOVIRUS 14 3DPOL DBREF 3CDW A 1 462 UNP P03313 POLG_CXB3N 1724 2185 DBREF 3CDW H 1 22 UNP P03313 POLG_CXB3N 1519 1540 SEQADV 3CDW HIS A 463 UNP P03313 EXPRESSION TAG SEQADV 3CDW HIS A 464 UNP P03313 EXPRESSION TAG SEQADV 3CDW HIS A 465 UNP P03313 EXPRESSION TAG SEQADV 3CDW HIS A 466 UNP P03313 EXPRESSION TAG SEQADV 3CDW HIS A 467 UNP P03313 EXPRESSION TAG SEQADV 3CDW HIS A 468 UNP P03313 EXPRESSION TAG SEQRES 1 A 468 GLY GLU ILE GLU PHE ILE GLU SER SER LYS ASP ALA GLY SEQRES 2 A 468 PHE PRO VAL ILE ASN THR PRO SER LYS THR LYS LEU GLU SEQRES 3 A 468 PRO SER VAL PHE HIS GLN VAL PHE GLU GLY ASN LYS GLU SEQRES 4 A 468 PRO ALA VAL LEU ARG SER GLY ASP PRO ARG LEU LYS ALA SEQRES 5 A 468 ASN PHE GLU GLU ALA ILE PHE SER LYS TYR ILE GLY ASN SEQRES 6 A 468 VAL ASN THR HIS VAL ASP GLU TYR MET LEU GLU ALA VAL SEQRES 7 A 468 ASP HIS TYR ALA GLY GLN LEU ALA THR LEU ASP ILE SER SEQRES 8 A 468 THR GLU PRO MET LYS LEU GLU ASP ALA VAL TYR GLY THR SEQRES 9 A 468 GLU GLY LEU GLU ALA LEU ASP LEU THR THR SER ALA GLY SEQRES 10 A 468 TYR PRO TYR VAL ALA LEU GLY ILE LYS LYS ARG ASP ILE SEQRES 11 A 468 LEU SER LYS LYS THR LYS ASP LEU THR LYS LEU LYS GLU SEQRES 12 A 468 CYS MET ASP LYS TYR GLY LEU ASN LEU PRO MET VAL THR SEQRES 13 A 468 TYR VAL LYS ASP GLU LEU ARG SER ILE GLU LYS VAL ALA SEQRES 14 A 468 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 468 ASP SER VAL ALA MET ARG GLN THR PHE GLY ASN LEU TYR SEQRES 16 A 468 LYS THR PHE HIS LEU ASN PRO GLY VAL VAL THR GLY SER SEQRES 17 A 468 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 468 PRO VAL MET LEU ASP GLY HIS LEU ILE ALA PHE ASP TYR SEQRES 19 A 468 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ALA SEQRES 20 A 468 CYS LEU LYS MET LEU LEU GLU LYS LEU GLY TYR THR HIS SEQRES 21 A 468 LYS GLU THR ASN TYR ILE ASP TYR LEU CYS ASN SER HIS SEQRES 22 A 468 HIS LEU TYR ARG ASP LYS HIS TYR PHE VAL ARG GLY GLY SEQRES 23 A 468 MET PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER SEQRES 24 A 468 MET ILE ASN ASN ILE ILE ILE ARG THR LEU MET LEU LYS SEQRES 25 A 468 VAL TYR LYS GLY ILE ASP LEU ASP GLN PHE ARG MET ILE SEQRES 26 A 468 ALA TYR GLY ASP ASP VAL ILE ALA SER TYR PRO TRP PRO SEQRES 27 A 468 ILE ASP ALA SER LEU LEU ALA GLU ALA GLY LYS GLY TYR SEQRES 28 A 468 GLY LEU ILE MET THR PRO ALA ASP LYS GLY GLU CYS PHE SEQRES 29 A 468 ASN GLU VAL THR TRP THR ASN ALA THR PHE LEU LYS ARG SEQRES 30 A 468 TYR PHE ARG ALA ASP GLU GLN TYR PRO PHE LEU VAL HIS SEQRES 31 A 468 PRO VAL MET PRO MET LYS ASP ILE HIS GLU SER ILE ARG SEQRES 32 A 468 TRP THR LYS ASP PRO LYS ASN THR GLN ASP HIS VAL ARG SEQRES 33 A 468 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU HIS GLU SEQRES 34 A 468 TYR GLU GLU PHE ILE ARG LYS ILE ARG SER VAL PRO VAL SEQRES 35 A 468 GLY ARG CYS LEU THR LEU PRO ALA PHE SER THR LEU ARG SEQRES 36 A 468 ARG LYS TRP LEU ASP SER PHE HIS HIS HIS HIS HIS HIS SEQRES 1 H 22 GLY ALA TYR THR GLY VAL PRO ASN GLN LYS PRO ARG VAL SEQRES 2 H 22 PRO THR LEU ARG GLN ALA LYS VAL GLN HET CL A 469 1 HET CL A 470 1 HET CL A 471 1 HET CL A 472 1 HET CL A 473 1 HET CL A 474 1 HET CL A 475 1 HET ACT A 476 4 HET ACT A 477 4 HET ACT A 478 4 HET ACT A 479 4 HET ACT A 480 4 HET ACT A 481 4 HET POP A 482 9 HET GOL A 483 6 HET GOL A 484 6 HET GOL A 485 6 HET GOL A 486 6 HET GOL A 487 6 HET GOL A 488 6 HET GOL A 489 6 HET GOL A 490 6 HET GOL A 491 6 HET GOL A 492 6 HET GOL A 493 6 HET GOL A 494 6 HET GOL A 495 6 HET GOL A 496 6 HET GOL A 497 6 HET GOL A 498 6 HET GOL A 499 6 HET GOL A 500 6 HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM POP PYROPHOSPHATE 2- HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 7(CL 1-) FORMUL 10 ACT 6(C2 H3 O2 1-) FORMUL 16 POP H2 O7 P2 2- FORMUL 17 GOL 27(C3 H8 O3) FORMUL 44 HOH *318(H2 O) HELIX 1 1 LYS A 10 GLY A 13 5 4 HELIX 2 2 ASN A 53 SER A 60 1 8 HELIX 3 3 ASP A 71 THR A 87 1 17 HELIX 4 4 LYS A 96 GLY A 103 1 8 HELIX 5 5 PRO A 119 LEU A 123 5 5 HELIX 6 6 LYS A 126 ILE A 130 5 5 HELIX 7 7 LEU A 138 GLY A 149 1 12 HELIX 8 8 SER A 164 LYS A 170 1 7 HELIX 9 9 SER A 180 ASN A 201 1 22 HELIX 10 10 ASP A 213 TRP A 218 1 6 HELIX 11 11 LYS A 220 LEU A 225 1 6 HELIX 12 12 GLY A 236 LEU A 241 1 6 HELIX 13 13 SER A 242 LEU A 256 1 15 HELIX 14 14 THR A 263 CYS A 270 1 8 HELIX 15 15 GLY A 293 TYR A 314 1 22 HELIX 16 16 ASP A 318 PHE A 322 5 5 HELIX 17 17 ASP A 340 GLY A 350 1 11 HELIX 18 18 ASP A 359 GLY A 361 5 3 HELIX 19 19 PRO A 394 ARG A 403 1 10 HELIX 20 20 ASP A 407 LYS A 409 5 3 HELIX 21 21 ASN A 410 TRP A 423 1 14 HELIX 22 22 GLY A 426 ARG A 438 1 13 HELIX 23 23 SER A 439 LEU A 446 5 8 HELIX 24 24 ALA A 450 PHE A 462 1 13 SHEET 1 A 5 GLU A 2 SER A 8 0 SHEET 2 A 5 LYS A 279 ARG A 284 -1 O ARG A 284 N GLU A 2 SHEET 3 A 5 ASN A 271 TYR A 276 -1 N TYR A 276 O LYS A 279 SHEET 4 A 5 MET A 154 VAL A 158 1 N MET A 154 O HIS A 273 SHEET 5 A 5 LEU A 175 ALA A 178 -1 O ILE A 176 N TYR A 157 SHEET 1 B 2 GLU A 26 PRO A 27 0 SHEET 2 B 2 TRP A 404 THR A 405 -1 O THR A 405 N GLU A 26 SHEET 1 C 2 GLU A 39 PRO A 40 0 SHEET 2 C 2 LEU A 162 ARG A 163 -1 O ARG A 163 N GLU A 39 SHEET 1 D 3 HIS A 228 ILE A 230 0 SHEET 2 D 3 ASP A 330 TYR A 335 -1 O TYR A 335 N HIS A 228 SHEET 3 D 3 ARG A 323 TYR A 327 -1 N ILE A 325 O ILE A 332 SHEET 1 E 2 PHE A 232 TYR A 234 0 SHEET 2 E 2 MET A 355 PRO A 357 -1 O THR A 356 N ASP A 233 SHEET 1 F 3 VAL A 389 VAL A 392 0 SHEET 2 F 3 TYR A 378 ALA A 381 -1 N ARG A 380 O HIS A 390 SHEET 3 F 3 ASN H 8 GLN H 9 1 O ASN H 8 N ALA A 381 CISPEP 1 TYR A 118 PRO A 119 0 2.56 SITE 1 AC1 3 TYR A 314 LYS A 315 GLY A 316 SITE 1 AC2 3 LYS A 220 HIS A 466 HIS A 468 SITE 1 AC3 3 GLU A 35 HIS A 399 LYS A 436 SITE 1 AC4 2 CYS A 212 ASP A 213 SITE 1 AC5 3 ARG A 163 LYS A 167 ARG A 174 SITE 1 AC6 3 PRO A 20 SER A 21 LYS A 22 SITE 1 AC7 2 LYS A 22 ARG A 44 SITE 1 AC8 5 ASN A 425 GLY A 426 GLU A 427 HIS A 428 SITE 2 AC8 5 GLU A 429 SITE 1 AC9 3 SER A 132 LYS A 133 LYS A 134 SITE 1 BC1 2 THR A 68 ALA A 247 SITE 1 BC2 1 HIS A 69 SITE 1 BC3 7 LYS A 38 LEU A 162 ARG A 163 SER A 164 SITE 2 BC3 7 LYS A 167 ARG A 174 LYS A 376 SITE 1 BC4 3 HIS A 199 SER A 295 TYR A 327 SITE 1 BC5 4 GLY A 290 CYS A 291 THR A 294 SER A 295 SITE 1 BC6 3 LYS A 38 ASP A 397 SER A 401 SITE 1 BC7 4 GLN A 384 TYR A 385 ARG A 455 LEU A 459 SITE 1 BC8 3 SER A 452 THR A 453 ARG A 456 SITE 1 BC9 4 ARG A 416 PRO A 449 ALA A 450 THR A 453 SITE 1 CC1 2 CYS A 212 TYR A 327 SITE 1 CC2 1 ASP A 397 SITE 1 CC3 4 THR A 370 TYR A 378 ARG A 380 PRO H 14 SITE 1 CC4 3 ASN A 151 LYS A 261 ASN A 264 SITE 1 CC5 6 PHE A 246 ALA A 247 ILE A 266 ASP A 267 SITE 2 CC5 6 CYS A 270 ASN A 271 SITE 1 CC6 5 ILE A 3 ILE A 6 GLU A 55 LYS A 279 SITE 2 CC6 5 TYR A 281 SITE 1 CC7 6 LEU A 43 ARG A 44 SER A 45 GLU A 55 SITE 2 CC7 6 TYR A 276 ARG A 277 SITE 1 CC8 6 PHE A 232 ASP A 233 ASP A 330 ASP A 359 SITE 2 CC8 6 THR A 373 PHE A 374 SITE 1 CC9 5 ILE A 58 PHE A 59 LYS A 61 TYR A 62 SITE 2 CC9 5 ALA A 239 SITE 1 DC1 3 LYS A 61 ARG A 174 GLY A 236 SITE 1 DC2 5 LYS A 10 GLY A 316 ASP A 318 TYR A 335 SITE 2 DC2 5 TRP A 337 SITE 1 DC3 6 LEU A 107 ARG A 188 TYR A 195 HIS A 199 SITE 2 DC3 6 SER A 292 GLY A 293 SITE 1 DC4 4 HIS A 31 GLY A 36 ARG A 403 TRP A 404 SITE 1 DC5 5 ALA A 381 ASP A 382 GLU A 383 HIS A 390 SITE 2 DC5 5 LYS H 10 SITE 1 DC6 4 GLY A 426 GLU A 427 HIS A 428 PHE A 451 SITE 1 DC7 3 ALA A 12 GLY A 13 ILE A 339 SITE 1 DC8 4 LYS A 140 LYS A 147 GLU A 346 LYS A 349 SITE 1 DC9 2 THR A 114 SER A 115 SITE 1 EC1 3 ASP A 47 PRO A 48 ARG A 49 SITE 1 EC2 3 GLU A 39 PRO A 40 TRP A 404 SITE 1 EC3 3 PRO A 386 THR A 447 PRO H 7 CRYST1 74.213 74.213 285.591 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013475 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003502 0.00000