HEADER ISOMERASE 28-FEB-08 3CE4 TITLE STRUCTURE OF MACROPHAGE MIGRATION INHIBITORY FACTOR COVALENTLY TITLE 2 INHIBITED BY PMSF TREATMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MIF, PHENYLPYRUVATE TAUTOMERASE, GLYCOSYLATION-INHIBITING COMPND 5 FACTOR, GIF; COMPND 6 EC: 5.3.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: MIF, GLIF, MMIF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS COVALENT MODIFICATION, COVALENT INHIBITION, CYTOKINE, INFLAMMATORY KEYWDS 2 RESPONSE, ISOMERASE, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.V.CRICHLOW,E.LOLIS REVDAT 6 30-OCT-24 3CE4 1 REMARK REVDAT 5 30-AUG-23 3CE4 1 REMARK LINK REVDAT 4 25-OCT-17 3CE4 1 REMARK REVDAT 3 13-JUL-11 3CE4 1 VERSN REVDAT 2 20-JAN-09 3CE4 1 JRNL REVDAT 1 30-DEC-08 3CE4 0 JRNL AUTH G.V.CRICHLOW,J.B.LUBETSKY,L.LENG,R.BUCALA,E.J.LOLIS JRNL TITL STRUCTURAL AND KINETIC ANALYSES OF MACROPHAGE MIGRATION JRNL TITL 2 INHIBITORY FACTOR ACTIVE SITE INTERACTIONS. JRNL REF BIOCHEMISTRY V. 48 132 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19090677 JRNL DOI 10.1021/BI8014423 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 57737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1202 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3882 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.4360 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.4870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 464 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.830 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6740 10.4790 -1.8090 REMARK 3 T TENSOR REMARK 3 T11: -0.0064 T22: -0.0422 REMARK 3 T33: 0.0996 T12: -0.0062 REMARK 3 T13: -0.0070 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.8605 L22: 1.2887 REMARK 3 L33: 1.1268 L12: 0.0077 REMARK 3 L13: 0.2736 L23: 0.9396 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: 0.1719 S13: -0.0348 REMARK 3 S21: -0.1276 S22: 0.0341 S23: -0.0889 REMARK 3 S31: -0.0198 S32: 0.1095 S33: -0.0829 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3970 12.3360 1.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.0010 T22: -0.0334 REMARK 3 T33: 0.0921 T12: -0.0078 REMARK 3 T13: 0.0045 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.5233 L22: 1.9224 REMARK 3 L33: 0.5366 L12: 1.0546 REMARK 3 L13: 1.0219 L23: 0.3544 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: -0.0388 S13: 0.0376 REMARK 3 S21: -0.0833 S22: -0.0572 S23: -0.0324 REMARK 3 S31: -0.0177 S32: -0.0034 S33: -0.0041 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7870 16.0250 5.9740 REMARK 3 T TENSOR REMARK 3 T11: -0.0250 T22: -0.0547 REMARK 3 T33: 0.1113 T12: -0.0102 REMARK 3 T13: -0.0136 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4712 L22: 0.8317 REMARK 3 L33: 1.4382 L12: -0.0592 REMARK 3 L13: 0.4929 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.0275 S13: 0.0283 REMARK 3 S21: -0.0222 S22: -0.0061 S23: 0.0478 REMARK 3 S31: -0.1299 S32: 0.0091 S33: 0.0087 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 21 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9230 -7.2750 1.5760 REMARK 3 T TENSOR REMARK 3 T11: 0.0345 T22: -0.0532 REMARK 3 T33: 0.1133 T12: -0.0027 REMARK 3 T13: -0.0662 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.9005 L22: 2.3433 REMARK 3 L33: 1.5637 L12: -1.9325 REMARK 3 L13: 1.0682 L23: -0.8028 REMARK 3 S TENSOR REMARK 3 S11: 0.2070 S12: 0.2620 S13: -0.2536 REMARK 3 S21: -0.2850 S22: -0.0540 S23: 0.1541 REMARK 3 S31: 0.2642 S32: 0.0381 S33: -0.1530 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 54 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1540 -3.2460 4.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.0110 T22: -0.0607 REMARK 3 T33: 0.1762 T12: -0.0084 REMARK 3 T13: -0.0725 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.8529 L22: 0.9103 REMARK 3 L33: 1.1840 L12: -0.3670 REMARK 3 L13: 0.4784 L23: -0.4451 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: 0.0407 S13: -0.1218 REMARK 3 S21: -0.1225 S22: 0.0063 S23: 0.2729 REMARK 3 S31: 0.1004 S32: -0.0542 S33: -0.0855 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7520 0.8000 9.2310 REMARK 3 T TENSOR REMARK 3 T11: -0.0364 T22: -0.0570 REMARK 3 T33: 0.1633 T12: -0.0060 REMARK 3 T13: -0.0318 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.6346 L22: 1.9877 REMARK 3 L33: 0.6551 L12: -0.3835 REMARK 3 L13: 0.2688 L23: -0.5434 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0521 S13: -0.1261 REMARK 3 S21: -0.0166 S22: 0.0485 S23: 0.3882 REMARK 3 S31: 0.0845 S32: -0.1003 S33: -0.1009 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 23 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7860 -4.0480 15.6090 REMARK 3 T TENSOR REMARK 3 T11: -0.0004 T22: -0.0571 REMARK 3 T33: 0.1230 T12: -0.0061 REMARK 3 T13: -0.0347 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.1125 L22: 1.6696 REMARK 3 L33: 2.1600 L12: 0.1721 REMARK 3 L13: -1.1744 L23: -0.5157 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0302 S13: -0.0559 REMARK 3 S21: 0.0584 S22: -0.0161 S23: -0.1017 REMARK 3 S31: 0.1526 S32: 0.0818 S33: 0.0229 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 24 C 54 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9940 -0.5250 17.5180 REMARK 3 T TENSOR REMARK 3 T11: -0.0091 T22: -0.0266 REMARK 3 T33: 0.1239 T12: 0.0023 REMARK 3 T13: -0.0177 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.3756 L22: 2.3315 REMARK 3 L33: 1.2917 L12: 0.4241 REMARK 3 L13: -0.4730 L23: -0.8545 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: -0.0562 S13: -0.0352 REMARK 3 S21: 0.1712 S22: -0.0361 S23: -0.0176 REMARK 3 S31: 0.0461 S32: 0.0679 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 55 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0790 4.0400 21.2180 REMARK 3 T TENSOR REMARK 3 T11: 0.0074 T22: -0.0566 REMARK 3 T33: 0.1044 T12: -0.0113 REMARK 3 T13: 0.0029 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.0589 L22: 1.0119 REMARK 3 L33: 0.6169 L12: 0.0006 REMARK 3 L13: 0.0799 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.1385 S13: -0.0659 REMARK 3 S21: 0.2089 S22: -0.0199 S23: 0.0237 REMARK 3 S31: 0.0261 S32: -0.0072 S33: -0.0334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58940 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CA7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% SATURATED AMMONIUM SULFATE, 4% REMARK 280 ISOPROPANOL, 0.1M TRIS(HYDROXYMETHYL)AMINOMETHANE; MIXED WITH REMARK 280 PROTEIN:INHIBITOR COMPLEX IN A 1:1 RATIO, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.70150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.41300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.75250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.41300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.70150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.75250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 66 CE NZ REMARK 470 ARG A 88 NE CZ NH1 NH2 REMARK 470 ARG B 11 CD NE CZ NH1 NH2 REMARK 470 GLN B 28 CD OE1 NE2 REMARK 470 ARG B 88 CZ NH1 NH2 REMARK 470 ARG C 11 NE CZ NH1 NH2 REMARK 470 LYS C 77 CE NZ REMARK 470 ARG C 88 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 108 139.43 -170.89 REMARK 500 SER A 111 -157.78 -152.76 REMARK 500 TRP B 108 134.21 -171.59 REMARK 500 SER B 111 -155.92 -151.61 REMARK 500 SER C 111 -158.82 -151.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMS A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMS B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMS C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA C 802 DBREF 3CE4 A 1 114 UNP P14174 MIF_HUMAN 2 115 DBREF 3CE4 B 1 114 UNP P14174 MIF_HUMAN 2 115 DBREF 3CE4 C 1 114 UNP P14174 MIF_HUMAN 2 115 SEQRES 1 A 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 A 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 A 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 A 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 A 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 A 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 A 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 A 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 A 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 B 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 B 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 B 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 B 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 B 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 B 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 B 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 B 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 B 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 C 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 C 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 C 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 C 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 C 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 C 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 C 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 C 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 C 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA HET SO4 A 901 5 HET SO4 A 904 5 HET PMS A 200 10 HET SO4 B 902 5 HET PMS B 200 10 HET GOL B 702 6 HET GOL B 703 6 HET IPA B 801 4 HET SO4 C 903 5 HET SO4 C 905 5 HET PMS C 200 10 HET GOL C 701 6 HET IPA C 802 4 HETNAM SO4 SULFATE ION HETNAM PMS PHENYLMETHANESULFONIC ACID HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 4 SO4 5(O4 S 2-) FORMUL 6 PMS 3(C7 H8 O3 S) FORMUL 9 GOL 3(C3 H8 O3) FORMUL 11 IPA 2(C3 H8 O) FORMUL 17 HOH *464(H2 O) HELIX 1 1 PRO A 10 VAL A 14 5 5 HELIX 2 2 GLY A 17 GLY A 31 1 15 HELIX 3 3 PRO A 33 TYR A 36 5 4 HELIX 4 4 GLY A 68 ARG A 88 1 21 HELIX 5 5 SER A 90 ASP A 92 5 3 HELIX 6 6 ASN A 102 ALA A 104 5 3 HELIX 7 7 PRO B 10 VAL B 14 5 5 HELIX 8 8 GLY B 17 GLY B 31 1 15 HELIX 9 9 PRO B 33 TYR B 36 5 4 HELIX 10 10 GLY B 68 ARG B 88 1 21 HELIX 11 11 SER B 90 ASP B 92 5 3 HELIX 12 12 ASN B 102 ALA B 104 5 3 HELIX 13 13 PRO C 10 VAL C 14 5 5 HELIX 14 14 GLY C 17 GLY C 31 1 15 HELIX 15 15 PRO C 33 TYR C 36 5 4 HELIX 16 16 GLY C 68 ARG C 88 1 21 HELIX 17 17 SER C 90 ASP C 92 5 3 HELIX 18 18 ASN C 102 ALA C 104 5 3 SHEET 1 A 7 SER B 111 THR B 112 0 SHEET 2 A 7 VAL B 106 TRP B 108 -1 N TRP B 108 O SER B 111 SHEET 3 A 7 VAL A 94 ASP A 100 -1 N ILE A 96 O GLY B 107 SHEET 4 A 7 ALA A 57 SER A 63 1 N CYS A 59 O TYR A 95 SHEET 5 A 7 MET A 2 THR A 7 -1 N ASN A 6 O LEU A 58 SHEET 6 A 7 ALA A 38 VAL A 42 1 O VAL A 42 N VAL A 5 SHEET 7 A 7 LEU C 46 PHE C 49 -1 O LEU C 46 N VAL A 41 SHEET 1 B 7 LEU A 46 PHE A 49 0 SHEET 2 B 7 ALA B 38 VAL B 42 -1 O VAL B 41 N LEU A 46 SHEET 3 B 7 MET B 2 THR B 7 1 N VAL B 5 O VAL B 42 SHEET 4 B 7 ALA B 57 SER B 63 -1 O LEU B 58 N ASN B 6 SHEET 5 B 7 VAL B 94 ASP B 100 1 O TYR B 95 N CYS B 59 SHEET 6 B 7 VAL C 106 TRP C 108 -1 O GLY C 107 N ILE B 96 SHEET 7 B 7 SER C 111 THR C 112 -1 O SER C 111 N TRP C 108 SHEET 1 C 7 SER A 111 THR A 112 0 SHEET 2 C 7 VAL A 106 TRP A 108 -1 N TRP A 108 O SER A 111 SHEET 3 C 7 VAL C 94 ASP C 100 -1 O ILE C 96 N GLY A 107 SHEET 4 C 7 ALA C 57 SER C 63 1 N CYS C 59 O TYR C 95 SHEET 5 C 7 MET C 2 THR C 7 -1 N ASN C 6 O LEU C 58 SHEET 6 C 7 ALA C 38 VAL C 42 1 O VAL C 42 N VAL C 5 SHEET 7 C 7 LEU B 46 PHE B 49 -1 N LEU B 46 O VAL C 41 LINK N PRO A 1 S PMS A 200 1555 1555 1.66 LINK N PRO B 1 S PMS B 200 1555 1555 1.66 LINK N PRO C 1 S PMS C 200 1555 1555 1.65 SITE 1 AC1 7 GLY A 68 GLY A 69 ALA A 70 GLN A 71 SITE 2 AC1 7 HOH A 482 HOH A 548 HOH A 635 SITE 1 AC2 3 ALA A 70 ARG A 73 HOH A 243 SITE 1 AC3 5 GLY B 68 GLY B 69 ALA B 70 GLN B 71 SITE 2 AC3 5 HOH B 554 SITE 1 AC4 7 GLY C 68 GLY C 69 ALA C 70 GLN C 71 SITE 2 AC4 7 HOH C 456 HOH C 575 HOH C 644 SITE 1 AC5 2 ARG C 73 HOH C 255 SITE 1 AC6 10 PRO A 1 MET A 2 LYS A 32 HIS A 62 SITE 2 AC6 10 SER A 63 ILE A 64 VAL A 106 GLN C 24 SITE 3 AC6 10 TYR C 95 ASN C 97 SITE 1 AC7 9 GLN A 24 TYR A 95 ASN A 97 PRO B 1 SITE 2 AC7 9 MET B 2 LYS B 32 HIS B 62 SER B 63 SITE 3 AC7 9 ILE B 64 SITE 1 AC8 9 TYR B 95 ASN B 97 PRO C 1 MET C 2 SITE 2 AC8 9 LYS C 32 HIS C 62 SER C 63 ILE C 64 SITE 3 AC8 9 VAL C 106 SITE 1 AC9 6 GLU A 85 ARG A 86 HOH A 619 GLY B 65 SITE 2 AC9 6 LYS B 66 HOH B 506 SITE 1 BC1 6 ASN A 109 GLY B 50 SER B 52 HOH B 579 SITE 2 BC1 6 ASP C 92 HOH C 264 SITE 1 BC2 4 HOH A 230 HOH A 310 GLN B 35 TRP B 108 SITE 1 BC3 7 SER B 20 GLY C 65 LYS C 66 GLN C 71 SITE 2 BC3 7 HOH C 267 HOH C 644 HOH C 650 SITE 1 BC4 2 PRO C 15 ASP C 16 CRYST1 67.403 67.505 88.826 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014836 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011258 0.00000