HEADER LYASE 28-FEB-08 3CEB TITLE CRYSTAL STRUCTURE OF A PUTATIVE 4-AMINO-4-DEOXYCHORISMATE LYASE TITLE 2 (HS_0128) FROM HAEMOPHILUS SOMNUS 129PT AT 2.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS SOMNUS; SOURCE 3 ORGANISM_TAXID: 205914; SOURCE 4 STRAIN: 129PT; SOURCE 5 GENE: YP_718332.1, HS_0128; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES FOLD, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3CEB 1 REMARK SEQADV REVDAT 6 24-JUL-19 3CEB 1 REMARK LINK REVDAT 5 25-OCT-17 3CEB 1 REMARK REVDAT 4 13-JUL-11 3CEB 1 VERSN REVDAT 3 23-MAR-11 3CEB 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3CEB 1 VERSN REVDAT 1 18-MAR-08 3CEB 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF D-AMINOACID AMINOTRANSFERASE-LIKE JRNL TITL 2 PLP-DEPENDENT ENZYME (YP_718332.1) FROM HAEMOPHILUS SOMNUS JRNL TITL 3 129PT AT 2.40 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 17351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 879 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : -0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.564 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1694 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1173 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2288 ; 1.934 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2855 ; 1.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 193 ; 5.346 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;33.732 ;24.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;13.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.030 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1811 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 345 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 970 ; 0.679 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 388 ; 0.147 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1572 ; 1.314 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 724 ; 2.146 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 716 ; 3.385 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1985 74.4278 -3.7471 REMARK 3 T TENSOR REMARK 3 T11: -0.1221 T22: -0.0842 REMARK 3 T33: -0.1365 T12: -0.0214 REMARK 3 T13: 0.0297 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 3.1363 L22: 2.8719 REMARK 3 L33: 3.4943 L12: -0.4536 REMARK 3 L13: 1.2684 L23: -1.4198 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: -0.2035 S13: -0.2115 REMARK 3 S21: -0.0209 S22: 0.0607 S23: 0.0024 REMARK 3 S31: -0.0378 S32: 0.0136 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0265 68.8139 -0.4283 REMARK 3 T TENSOR REMARK 3 T11: -0.1134 T22: -0.1001 REMARK 3 T33: -0.0497 T12: -0.0220 REMARK 3 T13: -0.0029 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 4.6799 L22: 3.4123 REMARK 3 L33: 1.5653 L12: 1.2674 REMARK 3 L13: -0.7898 L23: -0.1321 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: -0.0972 S13: -0.2471 REMARK 3 S21: 0.0133 S22: -0.0919 S23: 0.4382 REMARK 3 S31: 0.1375 S32: -0.1184 S33: 0.0816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. SULFATE IONS AND GLYCEROL MOLECULES FROM CRYSTALLIZATION REMARK 3 ARE MODELED IN THIS STRUCTURE. PLP MOLECULE FORMED A COVALENT REMARK 3 BOND WITH LYS 102 WITH CLEAR ELECTRON DENSITY SUPPORT. REMARK 4 REMARK 4 3CEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97928, 0.97886 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.296 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.946 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 20.0% GLYCEROL, 1.27M REMARK 280 AMMONIUM SULFATE, 0.1M SODIUM ACETATE PH 4.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.34667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.69333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.02000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.36667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 5.67333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 60 CD OE1 OE2 REMARK 470 GLN A 83 CD OE1 NE2 REMARK 470 LYS A 129 NZ REMARK 470 LYS A 161 CE NZ REMARK 470 LYS A 167 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 37 -8.45 79.23 REMARK 500 ASN A 70 -156.24 -130.03 REMARK 500 GLU A 117 -112.77 51.67 REMARK 500 GLU A 121 -173.23 -176.28 REMARK 500 THR A 131 -105.25 -116.53 REMARK 500 ASN A 143 -119.60 61.31 REMARK 500 LYS A 151 73.21 -119.57 REMARK 500 GLU A 183 146.89 -174.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 199 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377935 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3CEB A 1 193 UNP Q0I0Z6 Q0I0Z6_HAES1 1 193 SEQADV 3CEB GLY A 0 UNP Q0I0Z6 EXPRESSION TAG SEQRES 1 A 194 GLY MSE TRP GLN PHE PRO LEU PHE GLU THR ILE LEU ILE SEQRES 2 A 194 GLU GLN GLY GLN ALA LYS ASN ILE SER TYR HIS GLN GLN SEQRES 3 A 194 ARG TYR GLU LYS SER LEU LEU LYS PHE TYR PRO LYS MSE SEQRES 4 A 194 LYS LEU GLN PRO PHE ASP LEU ALA LYS ILE ILE ALA LYS SEQRES 5 A 194 HIS THR ALA LEU PHE THR HIS ARG GLU GLY LEU ILE ARG SEQRES 6 A 194 CYS ARG ILE ASP TYR ASN HIS HIS ASP TYR VAL LEU GLN SEQRES 7 A 194 CYS PHE PRO TYR GLN GLN LYS VAL TYR ARG THR PHE LYS SEQRES 8 A 194 PRO VAL PHE CYS ASP HIS ILE ASP TYR SER LEU LLP PHE SEQRES 9 A 194 SER ASP ARG THR LEU LEU ASN ASN LEU LEU LYS GLN LYS SEQRES 10 A 194 GLU GLU CYS ASP GLU ILE MSE ILE ILE ARG GLN GLY LYS SEQRES 11 A 194 VAL THR ASP CYS SER ILE GLY ASN LEU ILE PHE ARG GLN SEQRES 12 A 194 ASN ASN GLN TRP ILE THR PRO ASP LYS PRO LEU LEU GLU SEQRES 13 A 194 GLY THR GLN ARG ALA LYS LEU LEU GLU GLN LYS LYS ILE SEQRES 14 A 194 ILE ALA ARG GLU ILE PHE PHE GLU ASP LEU ALA GLN TYR SEQRES 15 A 194 GLU GLU ILE ARG LEU ILE ASN ALA MSE ASN GLY LEU MODRES 3CEB MSE A 1 MET SELENOMETHIONINE MODRES 3CEB MSE A 38 MET SELENOMETHIONINE MODRES 3CEB LLP A 102 LYS MODRES 3CEB MSE A 123 MET SELENOMETHIONINE MODRES 3CEB MSE A 190 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 38 8 HET LLP A 102 24 HET MSE A 123 9 HET MSE A 190 8 HET SO4 A 194 5 HET SO4 A 195 5 HET SO4 A 196 5 HET SO4 A 197 5 HET SO4 A 198 5 HET GOL A 199 6 HETNAM MSE SELENOMETHIONINE HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *85(H2 O) HELIX 1 1 ASN A 19 TYR A 35 1 17 HELIX 2 2 ASP A 44 LYS A 51 1 8 HELIX 3 3 HIS A 52 THR A 57 5 6 HELIX 4 4 ARG A 106 LYS A 114 1 9 HELIX 5 5 GLN A 115 GLU A 117 5 3 HELIX 6 6 GLY A 156 GLN A 165 1 10 HELIX 7 7 PHE A 174 TYR A 181 5 8 SHEET 1 A 4 GLN A 16 ALA A 17 0 SHEET 2 A 4 LEU A 6 GLU A 13 -1 N GLU A 13 O GLN A 16 SHEET 3 A 4 LEU A 62 TYR A 69 -1 O CYS A 65 N ILE A 10 SHEET 4 A 4 TYR A 74 TYR A 81 -1 O PHE A 79 N ARG A 64 SHEET 1 B 3 PHE A 89 PHE A 93 0 SHEET 2 B 3 GLU A 121 ARG A 126 1 O ILE A 125 N VAL A 92 SHEET 3 B 3 LYS A 129 VAL A 130 -1 O LYS A 129 N ARG A 126 SHEET 1 C 4 ILE A 169 ARG A 171 0 SHEET 2 C 4 GLN A 145 PRO A 149 1 N THR A 148 O ILE A 169 SHEET 3 C 4 ASN A 137 GLN A 142 -1 N GLN A 142 O GLN A 145 SHEET 4 C 4 ILE A 184 ILE A 187 -1 O ARG A 185 N ILE A 139 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N TRP A 2 1555 1555 1.32 LINK C LYS A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N LYS A 39 1555 1555 1.32 LINK C LEU A 101 N LLP A 102 1555 1555 1.31 LINK C LLP A 102 N PHE A 103 1555 1555 1.34 LINK C ILE A 122 N MSE A 123 1555 1555 1.32 LINK C MSE A 123 N ILE A 124 1555 1555 1.33 LINK C ALA A 189 N MSE A 190 1555 1555 1.34 LINK C MSE A 190 N ASN A 191 1555 1555 1.33 SITE 1 AC1 7 TYR A 35 HIS A 52 ASN A 70 HIS A 71 SITE 2 AC1 7 TYR A 74 LEU A 76 HOH A 214 SITE 1 AC2 6 ASN A 19 ILE A 20 SER A 21 TYR A 22 SITE 2 AC2 6 HOH A 227 HOH A 261 SITE 1 AC3 3 HIS A 58 ARG A 59 GLU A 60 SITE 1 AC4 3 CYS A 94 ASP A 95 HIS A 96 SITE 1 AC5 4 ARG A 106 ASN A 110 HOH A 218 HOH A 240 SITE 1 AC6 5 LYS A 84 TYR A 86 ARG A 185 LEU A 186 SITE 2 AC6 5 ASN A 191 CRYST1 149.730 149.730 34.040 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006679 0.003856 0.000000 0.00000 SCALE2 0.000000 0.007712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029377 0.00000