data_3CEC # _entry.id 3CEC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CEC pdb_00003cec 10.2210/pdb3cec/pdb RCSB RCSB046672 ? ? WWPDB D_1000046672 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 371811 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3CEC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-02-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of putative antidote protein of plasmid maintenance system (ZP_00107635.1) from Nostoc punctiforme PCC 73102 at 1.60 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3CEC _cell.length_a 35.070 _cell.length_b 36.710 _cell.length_c 50.050 _cell.angle_alpha 90.000 _cell.angle_beta 98.380 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CEC _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative antidote protein of plasmid maintenance system' 11885.062 1 ? ? ? ? 2 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 1 ? ? ? ? 3 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 4 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)DNWQDITDDRLVRPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRL WLNLQQKVDLWYALQSHKEEYEQV(MSE)TLV ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDNWQDITDDRLVRPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNL QQKVDLWYALQSHKEEYEQVMTLV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 371811 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASP n 1 4 ASN n 1 5 TRP n 1 6 GLN n 1 7 ASP n 1 8 ILE n 1 9 THR n 1 10 ASP n 1 11 ASP n 1 12 ARG n 1 13 LEU n 1 14 VAL n 1 15 ARG n 1 16 PRO n 1 17 ILE n 1 18 HIS n 1 19 PRO n 1 20 GLY n 1 21 GLU n 1 22 VAL n 1 23 ILE n 1 24 ALA n 1 25 ASP n 1 26 ILE n 1 27 LEU n 1 28 ASP n 1 29 ASP n 1 30 LEU n 1 31 ASP n 1 32 ILE n 1 33 ASN n 1 34 THR n 1 35 ALA n 1 36 ASN n 1 37 PHE n 1 38 ALA n 1 39 GLU n 1 40 ILE n 1 41 LEU n 1 42 GLY n 1 43 VAL n 1 44 SER n 1 45 ASN n 1 46 GLN n 1 47 THR n 1 48 ILE n 1 49 GLN n 1 50 GLU n 1 51 VAL n 1 52 ILE n 1 53 ASN n 1 54 GLY n 1 55 GLN n 1 56 ARG n 1 57 SER n 1 58 ILE n 1 59 THR n 1 60 VAL n 1 61 ASP n 1 62 ILE n 1 63 ALA n 1 64 ILE n 1 65 ARG n 1 66 LEU n 1 67 GLY n 1 68 LYS n 1 69 ALA n 1 70 LEU n 1 71 GLY n 1 72 ASN n 1 73 GLY n 1 74 PRO n 1 75 ARG n 1 76 LEU n 1 77 TRP n 1 78 LEU n 1 79 ASN n 1 80 LEU n 1 81 GLN n 1 82 GLN n 1 83 LYS n 1 84 VAL n 1 85 ASP n 1 86 LEU n 1 87 TRP n 1 88 TYR n 1 89 ALA n 1 90 LEU n 1 91 GLN n 1 92 SER n 1 93 HIS n 1 94 LYS n 1 95 GLU n 1 96 GLU n 1 97 TYR n 1 98 GLU n 1 99 GLN n 1 100 VAL n 1 101 MSE n 1 102 THR n 1 103 LEU n 1 104 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Nostoc _entity_src_gen.pdbx_gene_src_gene ZP_00107635.1 _entity_src_gen.gene_src_species 'Nostoc punctiforme' _entity_src_gen.gene_src_strain 'PCC 73102' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nostoc punctiforme' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 63737 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3CEC _struct_ref.pdbx_db_accession 3CEC _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDNWQDITDDRLVRPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQ QKVDLWYALQSHKEEYEQVMTLV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CEC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3CEC _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 103 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 103 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3CEC _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name PDB _struct_ref_seq_dif.pdbx_seq_db_accession_code 3CEC _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3CEC # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;NANODROP, 40.0% 2-Methyl-2,4-pentanediol, 5.0% PEG 8000, 0.1M Sodium cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-01-22 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97925 1.0 3 0.97883 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97925, 0.97883' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3CEC _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 25.214 _reflns.number_obs 16808 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_netI_over_sigmaI 13.260 _reflns.percent_possible_obs 98.300 _reflns.B_iso_Wilson_estimate 19.415 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.60 1.66 5788 ? 3064 0.359 2.3 ? ? ? ? ? 89.60 1 1 1.66 1.72 5542 ? 2904 0.292 2.9 ? ? ? ? ? 98.70 2 1 1.72 1.80 6394 ? 3350 0.216 3.8 ? ? ? ? ? 99.20 3 1 1.80 1.90 6634 ? 3469 0.151 5.5 ? ? ? ? ? 99.10 4 1 1.90 2.02 6279 ? 3287 0.088 8.9 ? ? ? ? ? 99.60 5 1 2.02 2.17 6064 ? 3165 0.059 12.6 ? ? ? ? ? 99.40 6 1 2.17 2.39 6352 ? 3314 0.042 16.1 ? ? ? ? ? 99.70 7 1 2.39 2.73 6274 ? 3244 0.031 20.3 ? ? ? ? ? 99.80 8 1 2.73 3.44 6437 ? 3321 0.024 26.1 ? ? ? ? ? 99.90 9 1 3.44 25.214 6344 ? 3284 0.020 32.7 ? ? ? ? ? 98.70 10 1 # _refine.entry_id 3CEC _refine.ls_d_res_high 1.600 _refine.ls_d_res_low 25.214 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.460 _refine.ls_number_reflns_obs 16798 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. 2-METHYL-2,4-PENTANEDIOL AND POLYETHYLENE GLYCOL FROM CRYSTALLIZATION CONDITION ARE MODELED IN THIS STRUCTURE. ; _refine.ls_R_factor_obs 0.168 _refine.ls_R_factor_R_work 0.166 _refine.ls_R_factor_R_free 0.202 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 849 _refine.B_iso_mean 12.034 _refine.aniso_B[1][1] 0.850 _refine.aniso_B[2][2] -0.400 _refine.aniso_B[3][3] -0.350 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.340 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.pdbx_overall_ESU_R 0.073 _refine.pdbx_overall_ESU_R_Free 0.078 _refine.overall_SU_ML 0.048 _refine.overall_SU_B 2.676 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 700 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 812 _refine_hist.d_res_high 1.600 _refine_hist.d_res_low 25.214 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 814 0.017 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 518 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1121 1.566 1.966 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1282 1.498 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 108 4.712 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39 41.495 25.897 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 136 11.596 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 18.034 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 127 0.106 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 953 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 149 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 506 1.780 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 202 0.542 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 830 2.971 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 308 5.421 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 291 8.233 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.639 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.990 _refine_ls_shell.number_reflns_R_work 1105 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.R_factor_R_free 0.270 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1172 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CEC _struct.title ;Crystal structure of a putative antidote protein of plasmid maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at 1.60 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, transcription' _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.entry_id 3CEC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 18 ? ASP A 31 ? HIS A 17 ASP A 30 1 ? 14 HELX_P HELX_P2 2 ASN A 33 ? GLY A 42 ? ASN A 32 GLY A 41 1 ? 10 HELX_P HELX_P3 3 SER A 44 ? ASN A 53 ? SER A 43 ASN A 52 1 ? 10 HELX_P HELX_P4 4 THR A 59 ? GLY A 71 ? THR A 58 GLY A 70 1 ? 13 HELX_P HELX_P5 5 GLY A 73 ? THR A 102 ? GLY A 72 THR A 101 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 100 C ? ? ? 1_555 A MSE 101 N A ? A VAL 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale2 covale both ? A VAL 100 C ? ? ? 1_555 A MSE 101 N B ? A VAL 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A VAL 100 C ? ? ? 1_555 A MSE 101 N C ? A VAL 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 101 C A ? ? 1_555 A THR 102 N ? ? A MSE 100 A THR 101 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale5 covale both ? A MSE 101 C B ? ? 1_555 A THR 102 N ? ? A MSE 100 A THR 101 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale6 covale both ? A MSE 101 C C ? ? 1_555 A THR 102 N ? ? A MSE 100 A THR 101 1_555 ? ? ? ? ? ? ? 1.319 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MRD 104 ? 2 'BINDING SITE FOR RESIDUE MRD A 104' AC2 Software A PEG 105 ? 4 'BINDING SITE FOR RESIDUE PEG A 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ASP A 61 ? ASP A 60 . ? 1_555 ? 2 AC1 2 ARG A 65 ? ARG A 64 . ? 1_555 ? 3 AC2 4 LEU A 41 ? LEU A 40 . ? 1_555 ? 4 AC2 4 ARG A 65 ? ARG A 64 . ? 1_555 ? 5 AC2 4 GLU A 98 ? GLU A 97 . ? 1_556 ? 6 AC2 4 THR A 102 ? THR A 101 . ? 1_556 ? # _atom_sites.entry_id 3CEC _atom_sites.fract_transf_matrix[1][1] 0.028514 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004199 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027241 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020196 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ASP 3 2 ? ? ? A . n A 1 4 ASN 4 3 ? ? ? A . n A 1 5 TRP 5 4 ? ? ? A . n A 1 6 GLN 6 5 ? ? ? A . n A 1 7 ASP 7 6 ? ? ? A . n A 1 8 ILE 8 7 ? ? ? A . n A 1 9 THR 9 8 ? ? ? A . n A 1 10 ASP 10 9 ? ? ? A . n A 1 11 ASP 11 10 ? ? ? A . n A 1 12 ARG 12 11 ? ? ? A . n A 1 13 LEU 13 12 ? ? ? A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 ARG 15 14 14 ARG ARG A . n A 1 16 PRO 16 15 15 PRO PRO A . n A 1 17 ILE 17 16 16 ILE ILE A . n A 1 18 HIS 18 17 17 HIS HIS A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 ILE 23 22 22 ILE ILE A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 ASN 33 32 32 ASN ASN A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 ASN 36 35 35 ASN ASN A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 ILE 40 39 39 ILE ILE A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 SER 44 43 43 SER SER A . n A 1 45 ASN 45 44 44 ASN ASN A . n A 1 46 GLN 46 45 45 GLN GLN A . n A 1 47 THR 47 46 46 THR THR A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 GLN 49 48 48 GLN GLN A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 ILE 52 51 51 ILE ILE A . n A 1 53 ASN 53 52 52 ASN ASN A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 GLN 55 54 54 GLN GLN A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 SER 57 56 56 SER SER A . n A 1 58 ILE 58 57 57 ILE ILE A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 VAL 60 59 59 VAL VAL A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 ILE 62 61 61 ILE ILE A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 GLY 67 66 66 GLY GLY A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 ALA 69 68 68 ALA ALA A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 ASN 72 71 71 ASN ASN A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 PRO 74 73 73 PRO PRO A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 TRP 77 76 76 TRP TRP A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 ASN 79 78 78 ASN ASN A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 GLN 81 80 80 GLN GLN A . n A 1 82 GLN 82 81 81 GLN GLN A . n A 1 83 LYS 83 82 82 LYS LYS A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 TRP 87 86 86 TRP TRP A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 GLN 91 90 90 GLN GLN A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 HIS 93 92 92 HIS HIS A . n A 1 94 LYS 94 93 93 LYS LYS A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 TYR 97 96 96 TYR TYR A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 MSE 101 100 100 MSE MSE A . n A 1 102 THR 102 101 101 THR THR A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 VAL 104 103 103 VAL VAL A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MRD 1 104 1 MRD MRD A . C 3 PEG 1 105 2 PEG PEG A . D 4 HOH 1 106 3 HOH HOH A . D 4 HOH 2 107 4 HOH HOH A . D 4 HOH 3 108 5 HOH HOH A . D 4 HOH 4 109 6 HOH HOH A . D 4 HOH 5 110 7 HOH HOH A . D 4 HOH 6 111 8 HOH HOH A . D 4 HOH 7 112 9 HOH HOH A . D 4 HOH 8 113 10 HOH HOH A . D 4 HOH 9 114 11 HOH HOH A . D 4 HOH 10 115 12 HOH HOH A . D 4 HOH 11 116 13 HOH HOH A . D 4 HOH 12 117 14 HOH HOH A . D 4 HOH 13 118 15 HOH HOH A . D 4 HOH 14 119 16 HOH HOH A . D 4 HOH 15 120 17 HOH HOH A . D 4 HOH 16 121 18 HOH HOH A . D 4 HOH 17 122 19 HOH HOH A . D 4 HOH 18 123 20 HOH HOH A . D 4 HOH 19 124 21 HOH HOH A . D 4 HOH 20 125 22 HOH HOH A . D 4 HOH 21 126 23 HOH HOH A . D 4 HOH 22 127 24 HOH HOH A . D 4 HOH 23 128 25 HOH HOH A . D 4 HOH 24 129 26 HOH HOH A . D 4 HOH 25 130 27 HOH HOH A . D 4 HOH 26 131 28 HOH HOH A . D 4 HOH 27 132 29 HOH HOH A . D 4 HOH 28 133 30 HOH HOH A . D 4 HOH 29 134 31 HOH HOH A . D 4 HOH 30 135 32 HOH HOH A . D 4 HOH 31 136 33 HOH HOH A . D 4 HOH 32 137 34 HOH HOH A . D 4 HOH 33 138 35 HOH HOH A . D 4 HOH 34 139 36 HOH HOH A . D 4 HOH 35 140 37 HOH HOH A . D 4 HOH 36 141 38 HOH HOH A . D 4 HOH 37 142 39 HOH HOH A . D 4 HOH 38 143 40 HOH HOH A . D 4 HOH 39 144 41 HOH HOH A . D 4 HOH 40 145 42 HOH HOH A . D 4 HOH 41 146 43 HOH HOH A . D 4 HOH 42 147 44 HOH HOH A . D 4 HOH 43 148 45 HOH HOH A . D 4 HOH 44 149 46 HOH HOH A . D 4 HOH 45 150 47 HOH HOH A . D 4 HOH 46 151 48 HOH HOH A . D 4 HOH 47 152 49 HOH HOH A . D 4 HOH 48 153 50 HOH HOH A . D 4 HOH 49 154 51 HOH HOH A . D 4 HOH 50 155 52 HOH HOH A . D 4 HOH 51 156 53 HOH HOH A . D 4 HOH 52 157 54 HOH HOH A . D 4 HOH 53 158 55 HOH HOH A . D 4 HOH 54 159 56 HOH HOH A . D 4 HOH 55 160 57 HOH HOH A . D 4 HOH 56 161 58 HOH HOH A . D 4 HOH 57 162 59 HOH HOH A . D 4 HOH 58 163 60 HOH HOH A . D 4 HOH 59 164 61 HOH HOH A . D 4 HOH 60 165 62 HOH HOH A . D 4 HOH 61 166 63 HOH HOH A . D 4 HOH 62 167 64 HOH HOH A . D 4 HOH 63 168 65 HOH HOH A . D 4 HOH 64 169 66 HOH HOH A . D 4 HOH 65 170 67 HOH HOH A . D 4 HOH 66 171 68 HOH HOH A . D 4 HOH 67 172 69 HOH HOH A . D 4 HOH 68 173 70 HOH HOH A . D 4 HOH 69 174 71 HOH HOH A . D 4 HOH 70 175 72 HOH HOH A . D 4 HOH 71 176 73 HOH HOH A . D 4 HOH 72 177 74 HOH HOH A . D 4 HOH 73 178 75 HOH HOH A . D 4 HOH 74 179 76 HOH HOH A . D 4 HOH 75 180 77 HOH HOH A . D 4 HOH 76 181 78 HOH HOH A . D 4 HOH 77 182 79 HOH HOH A . D 4 HOH 78 183 80 HOH HOH A . D 4 HOH 79 184 81 HOH HOH A . D 4 HOH 80 185 82 HOH HOH A . D 4 HOH 81 186 83 HOH HOH A . D 4 HOH 82 187 84 HOH HOH A . D 4 HOH 83 188 85 HOH HOH A . D 4 HOH 84 189 86 HOH HOH A . D 4 HOH 85 190 87 HOH HOH A . D 4 HOH 86 191 88 HOH HOH A . D 4 HOH 87 192 89 HOH HOH A . D 4 HOH 88 193 90 HOH HOH A . D 4 HOH 89 194 91 HOH HOH A . D 4 HOH 90 195 92 HOH HOH A . D 4 HOH 91 196 93 HOH HOH A . D 4 HOH 92 197 94 HOH HOH A . D 4 HOH 93 198 95 HOH HOH A . D 4 HOH 94 199 96 HOH HOH A . D 4 HOH 95 200 97 HOH HOH A . D 4 HOH 96 201 98 HOH HOH A . D 4 HOH 97 202 99 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 101 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 100 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 24.1380 _pdbx_refine_tls.origin_y 9.7520 _pdbx_refine_tls.origin_z 38.5170 _pdbx_refine_tls.T[1][1] 0.0936 _pdbx_refine_tls.T[2][2] 0.0369 _pdbx_refine_tls.T[3][3] 0.0612 _pdbx_refine_tls.T[1][2] -0.0108 _pdbx_refine_tls.T[1][3] -0.0085 _pdbx_refine_tls.T[2][3] 0.0065 _pdbx_refine_tls.L[1][1] 0.2563 _pdbx_refine_tls.L[2][2] 0.0604 _pdbx_refine_tls.L[3][3] 0.3184 _pdbx_refine_tls.L[1][2] -0.0261 _pdbx_refine_tls.L[1][3] 0.2725 _pdbx_refine_tls.L[2][3] 0.0130 _pdbx_refine_tls.S[1][1] -0.0065 _pdbx_refine_tls.S[2][2] 0.0011 _pdbx_refine_tls.S[3][3] 0.0054 _pdbx_refine_tls.S[1][2] 0.0473 _pdbx_refine_tls.S[1][3] 0.0212 _pdbx_refine_tls.S[2][3] 0.0387 _pdbx_refine_tls.S[2][1] -0.1159 _pdbx_refine_tls.S[3][1] -0.0782 _pdbx_refine_tls.S[3][2] 0.0535 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 14 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 104 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 13 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 103 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_entry_details.entry_id 3CEC _pdbx_entry_details.sequence_details ;1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. THE SEQUENCE INFORMATION IS AVAILABLE AT GENBANK WITH ACCESSION CODE ZP_00107635.1 AND FROM THE UNIPROT ARCHIVE WITH ACCESSION CODE UPI000038D8D9. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 13 ? CG1 ? A VAL 14 CG1 2 1 Y 1 A VAL 13 ? CG2 ? A VAL 14 CG2 3 1 Y 1 A ARG 14 ? CD ? A ARG 15 CD 4 1 Y 1 A ARG 14 ? NE ? A ARG 15 NE 5 1 Y 1 A ARG 14 ? CZ ? A ARG 15 CZ 6 1 Y 1 A ARG 14 ? NH1 ? A ARG 15 NH1 7 1 Y 1 A ARG 14 ? NH2 ? A ARG 15 NH2 8 1 Y 1 A GLN 81 ? CD ? A GLN 82 CD 9 1 Y 1 A GLN 81 ? OE1 ? A GLN 82 OE1 10 1 Y 1 A GLN 81 ? NE2 ? A GLN 82 NE2 11 1 Y 1 A LYS 93 ? CD ? A LYS 94 CD 12 1 Y 1 A LYS 93 ? CE ? A LYS 94 CE 13 1 Y 1 A LYS 93 ? NZ ? A LYS 94 NZ 14 1 Y 1 A GLU 94 ? CG ? A GLU 95 CG 15 1 Y 1 A GLU 94 ? CD ? A GLU 95 CD 16 1 Y 1 A GLU 94 ? OE1 ? A GLU 95 OE1 17 1 Y 1 A GLU 94 ? OE2 ? A GLU 95 OE2 18 1 Y 1 A GLN 98 ? CG ? A GLN 99 CG 19 1 Y 1 A GLN 98 ? CD ? A GLN 99 CD 20 1 Y 1 A GLN 98 ? OE1 ? A GLN 99 OE1 21 1 Y 1 A GLN 98 ? NE2 ? A GLN 99 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A ASP 2 ? A ASP 3 4 1 Y 1 A ASN 3 ? A ASN 4 5 1 Y 1 A TRP 4 ? A TRP 5 6 1 Y 1 A GLN 5 ? A GLN 6 7 1 Y 1 A ASP 6 ? A ASP 7 8 1 Y 1 A ILE 7 ? A ILE 8 9 1 Y 1 A THR 8 ? A THR 9 10 1 Y 1 A ASP 9 ? A ASP 10 11 1 Y 1 A ASP 10 ? A ASP 11 12 1 Y 1 A ARG 11 ? A ARG 12 13 1 Y 1 A LEU 12 ? A LEU 13 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 3 'DI(HYDROXYETHYL)ETHER' PEG 4 water HOH #