HEADER FLUORESCENT PROTEIN 03-MAR-08 3CFH TITLE PHOTOSWITCHABLE RED FLUORESCENT PROTEIN PSRFP, OFF-STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GFP-LIKE PHOTOSWITCHABLE FLUORESCENT PROTEIN; COMPND 3 CHAIN: L, M, R, S; COMPND 4 SYNONYM: PSRFP; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GFP-LIKE PHOTOSWITCHABLE FLUORESCENT PROTEIN; COMPND 8 CHAIN: A, B, G, H; COMPND 9 SYNONYM: PSRFP; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANEMONIA SULCATA; SOURCE 3 ORGANISM_COMMON: MEDITERRANEAN SNAKELOCKS SEA ANEMONE; SOURCE 4 ORGANISM_TAXID: 6108; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ANEMONIA SULCATA; SOURCE 12 ORGANISM_COMMON: MEDITERRANEAN SNAKELOCKS SEA ANEMONE; SOURCE 13 ORGANISM_TAXID: 6108; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS BETA BARREL, BETA CAN, CHROMOPHORE, PHOTOACTIVATION, FLUORESCENT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.S.KACHALOVA,S.GUNDEL,H.D.BARTUNIK,J.WIEDENMANN REVDAT 5 15-NOV-23 3CFH 1 REMARK REVDAT 4 01-NOV-23 3CFH 1 REMARK REVDAT 3 10-NOV-21 3CFH 1 SEQADV LINK REVDAT 2 24-MAR-09 3CFH 1 LINK REVDAT 1 10-MAR-09 3CFH 0 JRNL AUTH S.GUNDEL,G.S.KACHALOVA,F.OSWALD,J.FUCHS,H.D.BARTUNIK, JRNL AUTH 2 G.U.NIENHAUS,J.WIEDENMANN JRNL TITL STRUCTURE OF RED FLUORESCENT PROTEIN ASRFP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 109836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5784 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7871 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 418 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 908 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.70000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -2.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.849 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7842 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10646 ; 1.093 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 995 ; 5.943 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 352 ;33.460 ;24.233 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1328 ;13.820 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.397 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1068 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6105 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3934 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5089 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1063 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 55 ; 0.304 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4805 ; 0.531 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7549 ; 0.914 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3519 ; 1.054 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3046 ; 1.656 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3CFA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 65%(W/V) MPD, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.91350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 120.91350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.90950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.92550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.90950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.92550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 120.91350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.90950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.92550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 120.91350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.90950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.92550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN CONSISTS OF 4 PROTEIN CHAINS (1-231) AND REMARK 300 INSIDE EACH OF THEM THERE IS BREAK BETWEEN 62 AND 66 AS REMARK 300 CHROMOPHORE. THE BIOLOGICAL UNIT IS TETRAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, A, M, B, R, G, S, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET L 1 REMARK 465 ALA L 2 REMARK 465 SER L 3 REMARK 465 LEU L 4 REMARK 465 MET M 1 REMARK 465 ALA M 2 REMARK 465 SER M 3 REMARK 465 LEU M 4 REMARK 465 MET R 1 REMARK 465 ALA R 2 REMARK 465 SER R 3 REMARK 465 LEU R 4 REMARK 465 MET S 1 REMARK 465 ALA S 2 REMARK 465 SER S 3 REMARK 465 LEU S 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 195 O HOH A 327 1.89 REMARK 500 OD1 ASN L 33 O HOH L 110 1.96 REMARK 500 O CYS M 62 N1 NRQ B 65 1.97 REMARK 500 O HOH R 91 O HOH G 296 1.99 REMARK 500 OD1 ASN R 33 O HOH R 102 2.01 REMARK 500 O HOH R 105 O HOH G 233 2.02 REMARK 500 O HOH L 105 O HOH A 293 2.02 REMARK 500 O CYS M 62 N1 NRQ B 65 2.04 REMARK 500 NZ LYS G 181 O HOH G 278 2.07 REMARK 500 O HOH G 261 O HOH G 403 2.08 REMARK 500 O HOH G 279 O HOH G 407 2.11 REMARK 500 O HOH G 329 O HOH G 407 2.13 REMARK 500 O HOH L 105 O HOH A 286 2.13 REMARK 500 O HOH R 91 O HOH G 331 2.14 REMARK 500 O CYS L 62 N1 NRQ A 65 2.15 REMARK 500 O CYS R 62 N1 NRQ G 65 2.16 REMARK 500 NZ LYS A 120 O HOH A 386 2.17 REMARK 500 O HOH A 313 O HOH A 423 2.17 REMARK 500 O HOH G 296 O HOH G 321 2.17 REMARK 500 O CYS S 62 N1 NRQ H 65 2.18 REMARK 500 O HOH G 302 O HOH G 316 2.19 REMARK 500 OG SER G 66 OH TYR G 117 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH G 426 O HOH G 426 3555 1.83 REMARK 500 O HOH G 232 O HOH G 233 3555 1.98 REMARK 500 O HOH G 233 O HOH G 426 3555 1.99 REMARK 500 O HOH A 313 O HOH A 332 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 208 -45.11 -131.46 REMARK 500 LYS G 208 -44.21 -131.79 REMARK 500 LYS H 208 -52.80 -126.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CFA RELATED DB: PDB REMARK 900 ANEMONIA SULCATA FLUORESCENT PROTEIN ASFP595 REMARK 900 RELATED ID: 3CFF RELATED DB: PDB REMARK 900 PHOTOSWITCHABLE RED FLUORESCENT PROTEIN PSRFP, ON-STATE DBREF 3CFH L 1 62 PDB 3CFH 3CFH 1 62 DBREF 3CFH A 65 231 PDB 3CFH 3CFH 65 231 DBREF 3CFH M 1 62 PDB 3CFH 3CFH 1 62 DBREF 3CFH B 65 231 PDB 3CFH 3CFH 65 231 DBREF 3CFH R 1 62 PDB 3CFH 3CFH 1 62 DBREF 3CFH G 65 231 PDB 3CFH 3CFH 65 231 DBREF 3CFH S 1 62 PDB 3CFH 3CFH 1 62 DBREF 3CFH H 65 231 PDB 3CFH 3CFH 65 231 SEQADV 3CFH GLY A 143 PDB 3CFH SER 143 ENGINEERED MUTATION SEQADV 3CFH GLY B 143 PDB 3CFH SER 143 ENGINEERED MUTATION SEQADV 3CFH GLY G 143 PDB 3CFH SER 143 ENGINEERED MUTATION SEQADV 3CFH GLY H 143 PDB 3CFH SER 143 ENGINEERED MUTATION SEQRES 1 L 62 MET ALA SER LEU LEU THR GLU THR MET PRO PHE ARG MET SEQRES 2 L 62 THR MET GLU GLY THR VAL ASN GLY HIS HIS PHE LYS CYS SEQRES 3 L 62 THR GLY LYS GLY GLU GLY ASN PRO PHE GLU GLY THR GLN SEQRES 4 L 62 ASP MET LYS ILE GLU VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 L 62 PHE ALA PHE ASP ILE LEU SER THR SER CYS SEQRES 1 A 167 NRQ SER LYS THR PHE ILE LYS TYR VAL SER GLY ILE PRO SEQRES 2 A 167 ASP TYR PHE LYS GLN SER PHE PRO GLU GLY PHE THR TRP SEQRES 3 A 167 GLU ARG THR THR THR TYR GLU ASP GLY GLY PHE LEU THR SEQRES 4 A 167 ALA HIS GLN ASP THR SER LEU ASP GLY ASP CME LEU VAL SEQRES 5 A 167 TYR LYS VAL LYS ILE LEU GLY ASN ASN PHE PRO ALA ASP SEQRES 6 A 167 GLY PRO VAL MET GLN ASN LYS ALA GLY GLY TRP GLU PRO SEQRES 7 A 167 GLY CYS GLU ILE LEU TYR GLU VAL ASP GLY VAL LEU CYS SEQRES 8 A 167 GLY GLN SER LEU MET ALA LEU LYS CYS PRO GLY GLY ARG SEQRES 9 A 167 HIS LEU ASN CYS ARG LEU HIS THR THR TYR ARG SER LYS SEQRES 10 A 167 LYS PRO ALA SER ALA LEU LYS MET PRO GLU PHE HIS PHE SEQRES 11 A 167 GLU ASP HIS ARG ILE GLU VAL LYS GLU VAL GLN LYS GLY SEQRES 12 A 167 LYS HIS TYR GLU GLN TYR GLU ALA ALA VAL ALA ARG TYR SEQRES 13 A 167 CME ASP ALA ALA PRO SER LYS LEU GLY HIS HIS SEQRES 1 M 62 MET ALA SER LEU LEU THR GLU THR MET PRO PHE ARG MET SEQRES 2 M 62 THR MET GLU GLY THR VAL ASN GLY HIS HIS PHE LYS CYS SEQRES 3 M 62 THR GLY LYS GLY GLU GLY ASN PRO PHE GLU GLY THR GLN SEQRES 4 M 62 ASP MET LYS ILE GLU VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 M 62 PHE ALA PHE ASP ILE LEU SER THR SER CYS SEQRES 1 B 167 NRQ SER LYS THR PHE ILE LYS TYR VAL SER GLY ILE PRO SEQRES 2 B 167 ASP TYR PHE LYS GLN SER PHE PRO GLU GLY PHE THR TRP SEQRES 3 B 167 GLU ARG THR THR THR TYR GLU ASP GLY GLY PHE LEU THR SEQRES 4 B 167 ALA HIS GLN ASP THR SER LEU ASP GLY ASP CME LEU VAL SEQRES 5 B 167 TYR LYS VAL LYS ILE LEU GLY ASN ASN PHE PRO ALA ASP SEQRES 6 B 167 GLY PRO VAL MET GLN ASN LYS ALA GLY GLY TRP GLU PRO SEQRES 7 B 167 GLY CYS GLU ILE LEU TYR GLU VAL ASP GLY VAL LEU CYS SEQRES 8 B 167 GLY GLN SER LEU MET ALA LEU LYS CYS PRO GLY GLY ARG SEQRES 9 B 167 HIS LEU ASN CYS ARG LEU HIS THR THR TYR ARG SER LYS SEQRES 10 B 167 LYS PRO ALA SER ALA LEU LYS MET PRO GLU PHE HIS PHE SEQRES 11 B 167 GLU ASP HIS ARG ILE GLU VAL LYS GLU VAL GLN LYS GLY SEQRES 12 B 167 LYS HIS TYR GLU GLN TYR GLU ALA ALA VAL ALA ARG TYR SEQRES 13 B 167 CME ASP ALA ALA PRO SER LYS LEU GLY HIS HIS SEQRES 1 R 62 MET ALA SER LEU LEU THR GLU THR MET PRO PHE ARG MET SEQRES 2 R 62 THR MET GLU GLY THR VAL ASN GLY HIS HIS PHE LYS CYS SEQRES 3 R 62 THR GLY LYS GLY GLU GLY ASN PRO PHE GLU GLY THR GLN SEQRES 4 R 62 ASP MET LYS ILE GLU VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 R 62 PHE ALA PHE ASP ILE LEU SER THR SER CYS SEQRES 1 G 167 NRQ SER LYS THR PHE ILE LYS TYR VAL SER GLY ILE PRO SEQRES 2 G 167 ASP TYR PHE LYS GLN SER PHE PRO GLU GLY PHE THR TRP SEQRES 3 G 167 GLU ARG THR THR THR TYR GLU ASP GLY GLY PHE LEU THR SEQRES 4 G 167 ALA HIS GLN ASP THR SER LEU ASP GLY ASP CME LEU VAL SEQRES 5 G 167 TYR LYS VAL LYS ILE LEU GLY ASN ASN PHE PRO ALA ASP SEQRES 6 G 167 GLY PRO VAL MET GLN ASN LYS ALA GLY GLY TRP GLU PRO SEQRES 7 G 167 GLY CYS GLU ILE LEU TYR GLU VAL ASP GLY VAL LEU CYS SEQRES 8 G 167 GLY GLN SER LEU MET ALA LEU LYS CYS PRO GLY GLY ARG SEQRES 9 G 167 HIS LEU ASN CYS ARG LEU HIS THR THR TYR ARG SER LYS SEQRES 10 G 167 LYS PRO ALA SER ALA LEU LYS MET PRO GLU PHE HIS PHE SEQRES 11 G 167 GLU ASP HIS ARG ILE GLU VAL LYS GLU VAL GLN LYS GLY SEQRES 12 G 167 LYS HIS TYR GLU GLN TYR GLU ALA ALA VAL ALA ARG TYR SEQRES 13 G 167 CME ASP ALA ALA PRO SER LYS LEU GLY HIS HIS SEQRES 1 S 62 MET ALA SER LEU LEU THR GLU THR MET PRO PHE ARG MET SEQRES 2 S 62 THR MET GLU GLY THR VAL ASN GLY HIS HIS PHE LYS CYS SEQRES 3 S 62 THR GLY LYS GLY GLU GLY ASN PRO PHE GLU GLY THR GLN SEQRES 4 S 62 ASP MET LYS ILE GLU VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 S 62 PHE ALA PHE ASP ILE LEU SER THR SER CYS SEQRES 1 H 167 NRQ SER LYS THR PHE ILE LYS TYR VAL SER GLY ILE PRO SEQRES 2 H 167 ASP TYR PHE LYS GLN SER PHE PRO GLU GLY PHE THR TRP SEQRES 3 H 167 GLU ARG THR THR THR TYR GLU ASP GLY GLY PHE LEU THR SEQRES 4 H 167 ALA HIS GLN ASP THR SER LEU ASP GLY ASP CME LEU VAL SEQRES 5 H 167 TYR LYS VAL LYS ILE LEU GLY ASN ASN PHE PRO ALA ASP SEQRES 6 H 167 GLY PRO VAL MET GLN ASN LYS ALA GLY GLY TRP GLU PRO SEQRES 7 H 167 GLY CYS GLU ILE LEU TYR GLU VAL ASP GLY VAL LEU CYS SEQRES 8 H 167 GLY GLN SER LEU MET ALA LEU LYS CYS PRO GLY GLY ARG SEQRES 9 H 167 HIS LEU ASN CYS ARG LEU HIS THR THR TYR ARG SER LYS SEQRES 10 H 167 LYS PRO ALA SER ALA LEU LYS MET PRO GLU PHE HIS PHE SEQRES 11 H 167 GLU ASP HIS ARG ILE GLU VAL LYS GLU VAL GLN LYS GLY SEQRES 12 H 167 LYS HIS TYR GLU GLN TYR GLU ALA ALA VAL ALA ARG TYR SEQRES 13 H 167 CME ASP ALA ALA PRO SER LYS LEU GLY HIS HIS MODRES 3CFH NRQ A 65 MET MODRES 3CFH NRQ A 65 TYR MODRES 3CFH NRQ A 65 GLY MODRES 3CFH CME A 114 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3CFH CME A 221 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3CFH NRQ B 65 MET MODRES 3CFH NRQ B 65 TYR MODRES 3CFH NRQ B 65 GLY MODRES 3CFH CME B 114 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3CFH CME B 221 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3CFH NRQ G 65 MET MODRES 3CFH NRQ G 65 TYR MODRES 3CFH NRQ G 65 GLY MODRES 3CFH CME G 114 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3CFH CME G 221 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3CFH NRQ H 65 MET MODRES 3CFH NRQ H 65 TYR MODRES 3CFH NRQ H 65 GLY MODRES 3CFH CME H 114 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3CFH CME H 221 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET NRQ A 65 46 HET CME A 114 10 HET CME A 221 10 HET NRQ B 65 46 HET CME B 114 10 HET CME B 221 10 HET NRQ G 65 46 HET CME G 114 10 HET CME G 221 10 HET NRQ H 65 46 HET CME H 114 10 HET CME H 221 10 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) FORMUL 2 NRQ 4(C16 H17 N3 O4 S) FORMUL 2 CME 8(C5 H11 N O3 S2) FORMUL 9 HOH *908(H2 O) HELIX 1 1 ALA L 54 CYS L 62 5 9 HELIX 2 2 ASP A 78 SER A 83 1 6 HELIX 3 3 PRO A 183 LEU A 187 5 5 HELIX 4 4 ALA M 54 CYS M 62 5 9 HELIX 5 5 PHE B 80 PHE B 84 5 5 HELIX 6 6 PRO B 183 LEU B 187 5 5 HELIX 7 7 ALA R 54 CYS R 62 5 9 HELIX 8 8 ASP G 78 SER G 83 1 6 HELIX 9 9 PRO G 183 LEU G 187 5 5 HELIX 10 10 ALA S 54 CYS S 62 5 9 HELIX 11 11 PHE H 80 PHE H 84 5 5 HELIX 12 12 PRO H 183 LEU H 187 5 5 SHEET 1 A13 LYS A 71 TYR A 72 0 SHEET 2 A13 HIS A 209 ARG A 219 1 O ALA A 218 N LYS A 71 SHEET 3 A13 HIS A 193 GLN A 205 -1 N PHE A 194 O ARG A 219 SHEET 4 A13 GLY A 143 VAL A 150 -1 N GLY A 143 O HIS A 197 SHEET 5 A13 VAL A 153 CYS A 164 -1 O GLN A 157 N ILE A 146 SHEET 6 A13 ARG A 168 SER A 180 -1 O TYR A 178 N LEU A 154 SHEET 7 A13 PHE A 88 TYR A 96 -1 N THR A 89 O ARG A 179 SHEET 8 A13 PHE A 101 ASP A 111 -1 O LEU A 102 N THR A 94 SHEET 9 A13 CME A 114 ASN A 124 -1 O CME A 114 N ASP A 111 SHEET 10 A13 MET L 9 VAL L 19 1 N ARG L 12 O TYR A 117 SHEET 11 A13 HIS L 22 ASN L 33 -1 O GLY L 32 N MET L 9 SHEET 12 A13 THR L 38 GLU L 47 -1 O LYS L 42 N LYS L 29 SHEET 13 A13 HIS A 209 ARG A 219 -1 O TYR A 210 N ILE L 43 SHEET 1 B13 LYS B 71 TYR B 72 0 SHEET 2 B13 HIS B 209 ARG B 219 1 O ALA B 218 N LYS B 71 SHEET 3 B13 HIS B 193 GLN B 205 -1 N ASP B 196 O VAL B 217 SHEET 4 B13 GLY B 143 VAL B 150 -1 N LEU B 147 O HIS B 193 SHEET 5 B13 VAL B 153 CYS B 164 -1 O GLN B 157 N ILE B 146 SHEET 6 B13 ARG B 168 SER B 180 -1 O TYR B 178 N LEU B 154 SHEET 7 B13 PHE B 88 TYR B 96 -1 N THR B 89 O ARG B 179 SHEET 8 B13 PHE B 101 ASP B 111 -1 O GLN B 106 N TRP B 90 SHEET 9 B13 CME B 114 ASN B 124 -1 O LEU B 122 N THR B 103 SHEET 10 B13 MET M 9 VAL M 19 1 N THR M 18 O GLY B 123 SHEET 11 B13 HIS M 22 ASN M 33 -1 O CYS M 26 N MET M 15 SHEET 12 B13 THR M 38 GLU M 47 -1 O GLU M 44 N THR M 27 SHEET 13 B13 HIS B 209 ARG B 219 -1 O TYR B 210 N ILE M 43 SHEET 1 C13 LYS G 71 TYR G 72 0 SHEET 2 C13 HIS G 209 ARG G 219 1 O ALA G 218 N LYS G 71 SHEET 3 C13 HIS G 193 GLN G 205 -1 N PHE G 194 O ARG G 219 SHEET 4 C13 GLY G 143 VAL G 150 -1 N GLY G 143 O HIS G 197 SHEET 5 C13 VAL G 153 CYS G 164 -1 O CYS G 155 N TYR G 148 SHEET 6 C13 ARG G 168 SER G 180 -1 O TYR G 178 N LEU G 154 SHEET 7 C13 PHE G 88 TYR G 96 -1 N THR G 89 O ARG G 179 SHEET 8 C13 PHE G 101 ASP G 111 -1 O THR G 108 N PHE G 88 SHEET 9 C13 CME G 114 ASN G 124 -1 O CME G 114 N ASP G 111 SHEET 10 C13 MET R 9 VAL R 19 1 N ARG R 12 O TYR G 117 SHEET 11 C13 HIS R 22 ASN R 33 -1 O GLY R 32 N MET R 9 SHEET 12 C13 THR R 38 GLU R 47 -1 O LYS R 42 N LYS R 29 SHEET 13 C13 HIS G 209 ARG G 219 -1 O TYR G 210 N ILE R 43 SHEET 1 D13 LYS H 71 TYR H 72 0 SHEET 2 D13 HIS H 209 ARG H 219 1 O ALA H 218 N LYS H 71 SHEET 3 D13 HIS H 193 GLN H 205 -1 N GLU H 200 O TYR H 213 SHEET 4 D13 GLY H 143 VAL H 150 -1 N GLY H 143 O HIS H 197 SHEET 5 D13 VAL H 153 CYS H 164 -1 O GLN H 157 N ILE H 146 SHEET 6 D13 ARG H 168 SER H 180 -1 O TYR H 178 N LEU H 154 SHEET 7 D13 PHE H 88 TYR H 96 -1 N THR H 89 O ARG H 179 SHEET 8 D13 PHE H 101 ASP H 111 -1 O GLN H 106 N TRP H 90 SHEET 9 D13 CME H 114 ASN H 124 -1 O LEU H 122 N THR H 103 SHEET 10 D13 MET S 9 VAL S 19 1 N THR S 18 O GLY H 123 SHEET 11 D13 HIS S 22 ASN S 33 -1 O GLY S 30 N PHE S 11 SHEET 12 D13 THR S 38 GLU S 47 -1 O LYS S 42 N LYS S 29 SHEET 13 D13 HIS H 209 ARG H 219 -1 O TYR H 210 N ILE S 43 SSBOND 1 CYS A 144 CYS B 144 1555 1555 2.06 SSBOND 2 CYS G 144 CYS H 144 1555 1555 2.05 LINK C3 BNRQ A 65 N SER A 66 1555 1555 1.35 LINK C ASP A 113 N CME A 114 1555 1555 1.33 LINK C CME A 114 N LEU A 115 1555 1555 1.33 LINK C TYR A 220 N CME A 221 1555 1555 1.33 LINK C CME A 221 N ASP A 222 1555 1555 1.33 LINK C3 BNRQ B 65 N SER B 66 1555 1555 1.35 LINK C ASP B 113 N CME B 114 1555 1555 1.33 LINK C CME B 114 N LEU B 115 1555 1555 1.33 LINK C TYR B 220 N CME B 221 1555 1555 1.33 LINK C CME B 221 N ASP B 222 1555 1555 1.33 LINK C3 BNRQ G 65 N SER G 66 1555 1555 1.31 LINK C ASP G 113 N CME G 114 1555 1555 1.33 LINK C CME G 114 N LEU G 115 1555 1555 1.33 LINK C TYR G 220 N CME G 221 1555 1555 1.33 LINK C CME G 221 N ASP G 222 1555 1555 1.33 LINK C3 BNRQ H 65 N SER H 66 1555 1555 1.35 LINK C AASP H 113 N CME H 114 1555 1555 1.33 LINK C BASP H 113 N CME H 114 1555 1555 1.33 LINK C CME H 114 N LEU H 115 1555 1555 1.33 LINK C TYR H 220 N CME H 221 1555 1555 1.33 LINK C CME H 221 N ASP H 222 1555 1555 1.33 CISPEP 1 GLY L 49 PRO L 50 0 -2.76 CISPEP 2 PHE A 84 PRO A 85 0 9.70 CISPEP 3 GLY M 49 PRO M 50 0 -0.53 CISPEP 4 PHE B 84 PRO B 85 0 8.27 CISPEP 5 GLY R 49 PRO R 50 0 -3.18 CISPEP 6 PHE G 84 PRO G 85 0 9.73 CISPEP 7 GLY S 49 PRO S 50 0 -2.48 CISPEP 8 PHE H 84 PRO H 85 0 6.96 CRYST1 97.819 97.851 241.827 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004135 0.00000