HEADER HISTONE/CHAPERONE 04-MAR-08 3CFV TITLE STRUCTURAL BASIS OF THE INTERACTION OF RBAP46/RBAP48 WITH HISTONE H4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-BINDING PROTEIN RBBP7; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: RETINOBLASTOMA-BINDING PROTEIN 7, RBBP-7, RETINOBLASTOMA- COMPND 5 BINDING PROTEIN P46, HISTONE ACETYLTRANSFERASE TYPE B SUBUNIT 2, COMPND 6 NUCLEOSOME-REMODELING FACTOR SUBUNIT RBAP46; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4 PEPTIDE; COMPND 10 CHAIN: E, F; COMPND 11 FRAGMENT: UNP RESIDUES 25 TO 42; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: RBBP7, RBAP46; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PFBDM; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: BACMID VECTOR DH10BAC; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE IS CHEMICALLY SYNTHESIZED. KEYWDS RBAP46/RBAP48, CHROMATIN, HISTONE, WD-40 REPEAT PROTEIN, CHAPERONE, KEYWDS 2 FLEXIB, CHROMATIN REGULATOR, DNA REPLICATION, PHOSPHOPROTEIN, KEYWDS 3 REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, WD REPEAT, KEYWDS 4 CHROMOSOMAL PROTEIN, DNA-BINDING, NUCLEOSOME CORE, HISTONE-CHAPERONE KEYWDS 5 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.-Y.PEI,N.V.MURZINA,W.ZHANG,S.MCLAUGHLIN,A.VERREAULT,B.F.LUISI, AUTHOR 2 E.D.LAUE REVDAT 7 20-NOV-24 3CFV 1 REMARK REVDAT 6 03-APR-24 3CFV 1 SEQADV LINK REVDAT 5 24-JAN-18 3CFV 1 AUTHOR REVDAT 4 24-FEB-09 3CFV 1 VERSN REVDAT 3 15-JUL-08 3CFV 1 JRNL REVDAT 2 17-JUN-08 3CFV 1 JRNL REVDAT 1 10-JUN-08 3CFV 0 JRNL AUTH N.V.MURZINA,X.Y.PEI,W.ZHANG,M.SPARKES,J.VICENTE-GARCIA, JRNL AUTH 2 J.V.PRATAP,S.H.MCLAUGHLIN,T.R.BEN-SHAHAR,A.VERREAULT, JRNL AUTH 3 B.F.LUISI,E.D.LAUE JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF HISTONE H4 BY THE JRNL TITL 2 HISTONE-CHAPERONE RBAP46. JRNL REF STRUCTURE V. 16 1077 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18571423 JRNL DOI 10.1016/J.STR.2008.05.006 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2237 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6505 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97000 REMARK 3 B22 (A**2) : -1.55000 REMARK 3 B33 (A**2) : 2.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.662 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.316 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6711 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9090 ; 0.865 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 809 ; 4.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 323 ;31.235 ;24.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1109 ;15.201 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;12.462 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 989 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5112 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2981 ; 0.228 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4423 ; 0.319 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 483 ; 0.191 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 105 ; 0.203 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.164 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4068 ; 3.462 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6591 ; 5.422 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2612 ; 3.943 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2499 ; 5.454 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 11 B 408 6 REMARK 3 1 A 11 A 408 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 B (A): 3012 ; 0.22 ; 5.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 3012 ; 1.80 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : E F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 E 29 E 41 6 REMARK 3 1 F 29 F 41 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 E (A): 105 ; 0.56 ; 5.00 REMARK 3 LOOSE THERMAL 2 E (A**2): 105 ; 1.44 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : 0.14300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.73100 REMARK 200 R SYM FOR SHELL (I) : 0.73100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: OUR RABP46/H4 SAD DATA PHASING MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 2000, 0.2M CA ACETATE, 0.1M NA REMARK 280 CACODYLATE, PH 6.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.39500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 90 REMARK 465 GLN B 91 REMARK 465 PHE B 92 REMARK 465 ASP B 93 REMARK 465 ALA B 94 REMARK 465 SER B 95 REMARK 465 HIS B 96 REMARK 465 CYS B 97 REMARK 465 ASP B 98 REMARK 465 SER B 99 REMARK 465 ASP B 100 REMARK 465 LYS B 101 REMARK 465 GLY B 102 REMARK 465 GLU B 103 REMARK 465 PHE B 104 REMARK 465 GLY B 105 REMARK 465 GLY B 106 REMARK 465 PHE B 107 REMARK 465 GLY B 108 REMARK 465 SER B 109 REMARK 465 GLU B 411 REMARK 465 HIS A -2 REMARK 465 ASP A 89 REMARK 465 ALA A 90 REMARK 465 GLN A 91 REMARK 465 PHE A 92 REMARK 465 ASP A 93 REMARK 465 ALA A 94 REMARK 465 SER A 95 REMARK 465 HIS A 96 REMARK 465 CYS A 97 REMARK 465 ASP A 98 REMARK 465 SER A 99 REMARK 465 ASP A 100 REMARK 465 LYS A 101 REMARK 465 GLY A 102 REMARK 465 GLU A 103 REMARK 465 PHE A 104 REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 PHE A 107 REMARK 465 GLY A 108 REMARK 465 SER A 109 REMARK 465 ASP A 410 REMARK 465 GLU A 411 REMARK 465 ASP F 24 REMARK 465 ASN F 25 REMARK 465 ILE F 26 REMARK 465 GLN F 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 110 CG1 CG2 REMARK 470 ASP B 301 OD2 REMARK 470 VAL A 110 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B 7 CB - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 PHE B 7 N - CA - C ANGL. DEV. = 18.7 DEGREES REMARK 500 THR F 30 CB - CA - C ANGL. DEV. = -22.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 5 97.74 170.56 REMARK 500 PHE B 7 -10.23 73.98 REMARK 500 ASN B 135 89.67 -151.26 REMARK 500 TYR B 180 -38.57 -135.81 REMARK 500 HIS B 199 -2.89 81.87 REMARK 500 ALA B 208 -132.20 -85.10 REMARK 500 SER B 314 -35.04 161.99 REMARK 500 ASN B 396 -6.21 81.85 REMARK 500 ASN B 406 -25.10 -39.15 REMARK 500 LYS A 4 76.01 -151.40 REMARK 500 SER A 145 -148.41 -92.75 REMARK 500 HIS A 199 -2.20 79.61 REMARK 500 ILE A 206 9.43 -64.95 REMARK 500 ASN A 207 41.18 -100.65 REMARK 500 ALA A 208 -127.56 -147.26 REMARK 500 PRO A 210 -153.27 -76.92 REMARK 500 GLU A 212 15.86 -161.96 REMARK 500 GLN A 249 11.13 80.42 REMARK 500 ASN A 259 38.68 -86.07 REMARK 500 LYS A 295 17.96 80.96 REMARK 500 SER A 314 -40.32 174.74 REMARK 500 SER A 347 5.00 -67.27 REMARK 500 TRP A 387 -4.37 78.51 REMARK 500 ASN A 396 -6.62 82.88 REMARK 500 THR F 30 -21.24 107.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CFS RELATED DB: PDB REMARK 900 THE SAME RBAP46 PROTEIN STRUCTURE COMPLEXED WITH LONGER H4 PEPTIDE DBREF 3CFV B 1 411 UNP Q16576 RBBP7_HUMAN 1 411 DBREF 3CFV E 24 41 UNP P62805 H4_HUMAN 25 42 DBREF 3CFV A 1 411 UNP Q16576 RBBP7_HUMAN 1 411 DBREF 3CFV F 24 41 UNP P62805 H4_HUMAN 25 42 SEQADV 3CFV HIS B -2 UNP Q16576 CLONING ARTIFACT SEQADV 3CFV MSE B -1 UNP Q16576 CLONING ARTIFACT SEQADV 3CFV ALA B 0 UNP Q16576 CLONING ARTIFACT SEQADV 3CFV HIS A -2 UNP Q16576 CLONING ARTIFACT SEQADV 3CFV MSE A -1 UNP Q16576 CLONING ARTIFACT SEQADV 3CFV ALA A 0 UNP Q16576 CLONING ARTIFACT SEQRES 1 B 414 HIS MSE ALA MSE ALA SER LYS GLU MSE PHE GLU ASP THR SEQRES 2 B 414 VAL GLU GLU ARG VAL ILE ASN GLU GLU TYR LYS ILE TRP SEQRES 3 B 414 LYS LYS ASN THR PRO PHE LEU TYR ASP LEU VAL MSE THR SEQRES 4 B 414 HIS ALA LEU GLN TRP PRO SER LEU THR VAL GLN TRP LEU SEQRES 5 B 414 PRO GLU VAL THR LYS PRO GLU GLY LYS ASP TYR ALA LEU SEQRES 6 B 414 HIS TRP LEU VAL LEU GLY THR HIS THR SER ASP GLU GLN SEQRES 7 B 414 ASN HIS LEU VAL VAL ALA ARG VAL HIS ILE PRO ASN ASP SEQRES 8 B 414 ASP ALA GLN PHE ASP ALA SER HIS CYS ASP SER ASP LYS SEQRES 9 B 414 GLY GLU PHE GLY GLY PHE GLY SER VAL THR GLY LYS ILE SEQRES 10 B 414 GLU CYS GLU ILE LYS ILE ASN HIS GLU GLY GLU VAL ASN SEQRES 11 B 414 ARG ALA ARG TYR MSE PRO GLN ASN PRO HIS ILE ILE ALA SEQRES 12 B 414 THR LYS THR PRO SER SER ASP VAL LEU VAL PHE ASP TYR SEQRES 13 B 414 THR LYS HIS PRO ALA LYS PRO ASP PRO SER GLY GLU CYS SEQRES 14 B 414 ASN PRO ASP LEU ARG LEU ARG GLY HIS GLN LYS GLU GLY SEQRES 15 B 414 TYR GLY LEU SER TRP ASN SER ASN LEU SER GLY HIS LEU SEQRES 16 B 414 LEU SER ALA SER ASP ASP HIS THR VAL CYS LEU TRP ASP SEQRES 17 B 414 ILE ASN ALA GLY PRO LYS GLU GLY LYS ILE VAL ASP ALA SEQRES 18 B 414 LYS ALA ILE PHE THR GLY HIS SER ALA VAL VAL GLU ASP SEQRES 19 B 414 VAL ALA TRP HIS LEU LEU HIS GLU SER LEU PHE GLY SER SEQRES 20 B 414 VAL ALA ASP ASP GLN LYS LEU MSE ILE TRP ASP THR ARG SEQRES 21 B 414 SER ASN THR THR SER LYS PRO SER HIS LEU VAL ASP ALA SEQRES 22 B 414 HIS THR ALA GLU VAL ASN CYS LEU SER PHE ASN PRO TYR SEQRES 23 B 414 SER GLU PHE ILE LEU ALA THR GLY SER ALA ASP LYS THR SEQRES 24 B 414 VAL ALA LEU TRP ASP LEU ARG ASN LEU LYS LEU LYS LEU SEQRES 25 B 414 HIS THR PHE GLU SER HIS LYS ASP GLU ILE PHE GLN VAL SEQRES 26 B 414 HIS TRP SER PRO HIS ASN GLU THR ILE LEU ALA SER SER SEQRES 27 B 414 GLY THR ASP ARG ARG LEU ASN VAL TRP ASP LEU SER LYS SEQRES 28 B 414 ILE GLY GLU GLU GLN SER ALA GLU ASP ALA GLU ASP GLY SEQRES 29 B 414 PRO PRO GLU LEU LEU PHE ILE HIS GLY GLY HIS THR ALA SEQRES 30 B 414 LYS ILE SER ASP PHE SER TRP ASN PRO ASN GLU PRO TRP SEQRES 31 B 414 VAL ILE CYS SER VAL SER GLU ASP ASN ILE MSE GLN ILE SEQRES 32 B 414 TRP GLN MSE ALA GLU ASN ILE TYR ASN ASP GLU SEQRES 1 E 18 ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG SEQRES 2 E 18 LEU ALA ARG ARG GLY SEQRES 1 A 414 HIS MSE ALA MSE ALA SER LYS GLU MSE PHE GLU ASP THR SEQRES 2 A 414 VAL GLU GLU ARG VAL ILE ASN GLU GLU TYR LYS ILE TRP SEQRES 3 A 414 LYS LYS ASN THR PRO PHE LEU TYR ASP LEU VAL MSE THR SEQRES 4 A 414 HIS ALA LEU GLN TRP PRO SER LEU THR VAL GLN TRP LEU SEQRES 5 A 414 PRO GLU VAL THR LYS PRO GLU GLY LYS ASP TYR ALA LEU SEQRES 6 A 414 HIS TRP LEU VAL LEU GLY THR HIS THR SER ASP GLU GLN SEQRES 7 A 414 ASN HIS LEU VAL VAL ALA ARG VAL HIS ILE PRO ASN ASP SEQRES 8 A 414 ASP ALA GLN PHE ASP ALA SER HIS CYS ASP SER ASP LYS SEQRES 9 A 414 GLY GLU PHE GLY GLY PHE GLY SER VAL THR GLY LYS ILE SEQRES 10 A 414 GLU CYS GLU ILE LYS ILE ASN HIS GLU GLY GLU VAL ASN SEQRES 11 A 414 ARG ALA ARG TYR MSE PRO GLN ASN PRO HIS ILE ILE ALA SEQRES 12 A 414 THR LYS THR PRO SER SER ASP VAL LEU VAL PHE ASP TYR SEQRES 13 A 414 THR LYS HIS PRO ALA LYS PRO ASP PRO SER GLY GLU CYS SEQRES 14 A 414 ASN PRO ASP LEU ARG LEU ARG GLY HIS GLN LYS GLU GLY SEQRES 15 A 414 TYR GLY LEU SER TRP ASN SER ASN LEU SER GLY HIS LEU SEQRES 16 A 414 LEU SER ALA SER ASP ASP HIS THR VAL CYS LEU TRP ASP SEQRES 17 A 414 ILE ASN ALA GLY PRO LYS GLU GLY LYS ILE VAL ASP ALA SEQRES 18 A 414 LYS ALA ILE PHE THR GLY HIS SER ALA VAL VAL GLU ASP SEQRES 19 A 414 VAL ALA TRP HIS LEU LEU HIS GLU SER LEU PHE GLY SER SEQRES 20 A 414 VAL ALA ASP ASP GLN LYS LEU MSE ILE TRP ASP THR ARG SEQRES 21 A 414 SER ASN THR THR SER LYS PRO SER HIS LEU VAL ASP ALA SEQRES 22 A 414 HIS THR ALA GLU VAL ASN CYS LEU SER PHE ASN PRO TYR SEQRES 23 A 414 SER GLU PHE ILE LEU ALA THR GLY SER ALA ASP LYS THR SEQRES 24 A 414 VAL ALA LEU TRP ASP LEU ARG ASN LEU LYS LEU LYS LEU SEQRES 25 A 414 HIS THR PHE GLU SER HIS LYS ASP GLU ILE PHE GLN VAL SEQRES 26 A 414 HIS TRP SER PRO HIS ASN GLU THR ILE LEU ALA SER SER SEQRES 27 A 414 GLY THR ASP ARG ARG LEU ASN VAL TRP ASP LEU SER LYS SEQRES 28 A 414 ILE GLY GLU GLU GLN SER ALA GLU ASP ALA GLU ASP GLY SEQRES 29 A 414 PRO PRO GLU LEU LEU PHE ILE HIS GLY GLY HIS THR ALA SEQRES 30 A 414 LYS ILE SER ASP PHE SER TRP ASN PRO ASN GLU PRO TRP SEQRES 31 A 414 VAL ILE CYS SER VAL SER GLU ASP ASN ILE MSE GLN ILE SEQRES 32 A 414 TRP GLN MSE ALA GLU ASN ILE TYR ASN ASP GLU SEQRES 1 F 18 ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG SEQRES 2 F 18 LEU ALA ARG ARG GLY MODRES 3CFV MSE B -1 MET SELENOMETHIONINE MODRES 3CFV MSE B 1 MET SELENOMETHIONINE MODRES 3CFV MSE B 6 MET SELENOMETHIONINE MODRES 3CFV MSE B 35 MET SELENOMETHIONINE MODRES 3CFV MSE B 132 MET SELENOMETHIONINE MODRES 3CFV MSE B 252 MET SELENOMETHIONINE MODRES 3CFV MSE B 398 MET SELENOMETHIONINE MODRES 3CFV MSE B 403 MET SELENOMETHIONINE MODRES 3CFV MSE A -1 MET SELENOMETHIONINE MODRES 3CFV MSE A 1 MET SELENOMETHIONINE MODRES 3CFV MSE A 6 MET SELENOMETHIONINE MODRES 3CFV MSE A 35 MET SELENOMETHIONINE MODRES 3CFV MSE A 132 MET SELENOMETHIONINE MODRES 3CFV MSE A 252 MET SELENOMETHIONINE MODRES 3CFV MSE A 398 MET SELENOMETHIONINE MODRES 3CFV MSE A 403 MET SELENOMETHIONINE HET MSE B -1 8 HET MSE B 1 8 HET MSE B 6 8 HET MSE B 35 8 HET MSE B 132 8 HET MSE B 252 8 HET MSE B 398 8 HET MSE B 403 8 HET MSE A -1 8 HET MSE A 1 8 HET MSE A 6 8 HET MSE A 35 8 HET MSE A 132 8 HET MSE A 252 8 HET MSE A 398 8 HET MSE A 403 8 HET ARS B 412 1 HET ARS A 412 1 HETNAM MSE SELENOMETHIONINE HETNAM ARS ARSENIC FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 ARS 2(AS) FORMUL 7 HOH *275(H2 O) HELIX 1 1 ASP B 9 LEU B 30 1 22 HELIX 2 2 THR B 154 HIS B 156 5 3 HELIX 3 3 SER B 347 ILE B 349 5 3 HELIX 4 4 SER B 354 GLU B 359 1 6 HELIX 5 5 ALA B 404 ASN B 409 1 6 HELIX 6 6 ASN E 25 ARG E 40 1 16 HELIX 7 7 ASP A 9 LEU A 30 1 22 HELIX 8 8 THR A 154 HIS A 156 5 3 HELIX 9 9 SER A 347 ILE A 349 5 3 HELIX 10 10 SER A 354 GLU A 359 1 6 HELIX 11 11 ALA A 404 ASN A 409 1 6 HELIX 12 12 LYS F 31 ARG F 40 1 10 SHEET 1 A 4 TYR B 31 ALA B 38 0 SHEET 2 A 4 ILE B 397 MSE B 403 -1 O GLN B 402 N LEU B 33 SHEET 3 A 4 VAL B 388 SER B 393 -1 N ILE B 389 O TRP B 401 SHEET 4 A 4 ILE B 376 TRP B 381 -1 N ASP B 378 O VAL B 392 SHEET 1 B 4 VAL B 46 THR B 53 0 SHEET 2 B 4 TYR B 60 GLY B 68 -1 O VAL B 66 N GLN B 47 SHEET 3 B 4 ASN B 76 PRO B 86 -1 O VAL B 79 N LEU B 67 SHEET 4 B 4 LYS B 113 HIS B 122 -1 O ILE B 120 N LEU B 78 SHEET 1 C 5 ARG B 128 MSE B 132 0 SHEET 2 C 5 ASN B 135 LYS B 142 -1 O ILE B 138 N MSE B 132 SHEET 3 C 5 VAL B 148 ASP B 152 -1 O PHE B 151 N ILE B 139 SHEET 4 C 5 LEU B 170 ARG B 173 -1 O LEU B 172 N VAL B 148 SHEET 5 C 5 ILE B 215 ASP B 217 1 O VAL B 216 N ARG B 173 SHEET 1 D 4 LEU B 182 TRP B 184 0 SHEET 2 D 4 HIS B 191 ALA B 195 -1 O LEU B 193 N SER B 183 SHEET 3 D 4 VAL B 201 ASP B 205 -1 O TRP B 204 N LEU B 192 SHEET 4 D 4 ALA B 220 PHE B 222 -1 O PHE B 222 N VAL B 201 SHEET 1 E 4 VAL B 229 TRP B 234 0 SHEET 2 E 4 LEU B 241 ALA B 246 -1 O GLY B 243 N ALA B 233 SHEET 3 E 4 LYS B 250 ASP B 255 -1 O MSE B 252 N SER B 244 SHEET 4 E 4 HIS B 266 ASP B 269 -1 O VAL B 268 N LEU B 251 SHEET 1 F 4 VAL B 275 PHE B 280 0 SHEET 2 F 4 ILE B 287 SER B 292 -1 O GLY B 291 N ASN B 276 SHEET 3 F 4 THR B 296 ASP B 301 -1 O TRP B 300 N LEU B 288 SHEET 4 F 4 HIS B 310 GLU B 313 -1 O PHE B 312 N VAL B 297 SHEET 1 G 4 ILE B 319 TRP B 324 0 SHEET 2 G 4 ILE B 331 GLY B 336 -1 O ALA B 333 N HIS B 323 SHEET 3 G 4 LEU B 341 ASP B 345 -1 O TRP B 344 N LEU B 332 SHEET 4 G 4 LEU B 365 HIS B 369 -1 O HIS B 369 N LEU B 341 SHEET 1 H 4 TYR A 31 ALA A 38 0 SHEET 2 H 4 ILE A 397 MSE A 403 -1 O ILE A 400 N MSE A 35 SHEET 3 H 4 VAL A 388 SER A 393 -1 N ILE A 389 O TRP A 401 SHEET 4 H 4 ILE A 376 TRP A 381 -1 N ASP A 378 O VAL A 392 SHEET 1 I 4 GLN A 47 THR A 53 0 SHEET 2 I 4 TYR A 60 GLY A 68 -1 O LEU A 62 N THR A 53 SHEET 3 I 4 ASN A 76 PRO A 86 -1 O VAL A 79 N LEU A 67 SHEET 4 I 4 LYS A 113 HIS A 122 -1 O ILE A 120 N LEU A 78 SHEET 1 J 5 ARG A 128 MSE A 132 0 SHEET 2 J 5 ASN A 135 LYS A 142 -1 O ILE A 138 N MSE A 132 SHEET 3 J 5 VAL A 148 ASP A 152 -1 O PHE A 151 N ILE A 139 SHEET 4 J 5 LEU A 170 ARG A 173 -1 O LEU A 172 N VAL A 148 SHEET 5 J 5 ILE A 215 ASP A 217 1 O VAL A 216 N ARG A 171 SHEET 1 K 4 LEU A 182 TRP A 184 0 SHEET 2 K 4 HIS A 191 ALA A 195 -1 O LEU A 193 N SER A 183 SHEET 3 K 4 VAL A 201 ASP A 205 -1 O TRP A 204 N LEU A 192 SHEET 4 K 4 ALA A 220 PHE A 222 -1 O PHE A 222 N VAL A 201 SHEET 1 L 4 VAL A 229 TRP A 234 0 SHEET 2 L 4 LEU A 241 ALA A 246 -1 O GLY A 243 N ALA A 233 SHEET 3 L 4 LYS A 250 ASP A 255 -1 O TRP A 254 N PHE A 242 SHEET 4 L 4 HIS A 266 ASP A 269 -1 O VAL A 268 N LEU A 251 SHEET 1 M 4 VAL A 275 PHE A 280 0 SHEET 2 M 4 ILE A 287 SER A 292 -1 O GLY A 291 N CYS A 277 SHEET 3 M 4 THR A 296 ASP A 301 -1 O ALA A 298 N THR A 290 SHEET 4 M 4 HIS A 310 GLU A 313 -1 O PHE A 312 N VAL A 297 SHEET 1 N 4 ILE A 319 TRP A 324 0 SHEET 2 N 4 ILE A 331 GLY A 336 -1 O ALA A 333 N HIS A 323 SHEET 3 N 4 LEU A 341 ASP A 345 -1 O TRP A 344 N LEU A 332 SHEET 4 N 4 LEU A 365 HIS A 369 -1 O HIS A 369 N LEU A 341 LINK C HIS B -2 N MSE B -1 1555 1555 1.32 LINK C MSE B -1 N ALA B 0 1555 1555 1.32 LINK C ALA B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N ALA B 2 1555 1555 1.32 LINK C GLU B 5 N MSE B 6 1555 1555 1.32 LINK C MSE B 6 N PHE B 7 1555 1555 1.32 LINK C VAL B 34 N MSE B 35 1555 1555 1.32 LINK C MSE B 35 N THR B 36 1555 1555 1.32 LINK C TYR B 131 N MSE B 132 1555 1555 1.32 LINK C MSE B 132 N PRO B 133 1555 1555 1.32 LINK C LEU B 251 N MSE B 252 1555 1555 1.32 LINK C MSE B 252 N ILE B 253 1555 1555 1.32 LINK C ILE B 397 N MSE B 398 1555 1555 1.32 LINK C MSE B 398 N GLN B 399 1555 1555 1.32 LINK C GLN B 402 N MSE B 403 1555 1555 1.31 LINK C MSE B 403 N ALA B 404 1555 1555 1.32 LINK C MSE A -1 N ALA A 0 1555 1555 1.32 LINK C ALA A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ALA A 2 1555 1555 1.32 LINK C GLU A 5 N MSE A 6 1555 1555 1.32 LINK C MSE A 6 N PHE A 7 1555 1555 1.32 LINK C VAL A 34 N MSE A 35 1555 1555 1.32 LINK C MSE A 35 N THR A 36 1555 1555 1.32 LINK C TYR A 131 N MSE A 132 1555 1555 1.32 LINK C MSE A 132 N PRO A 133 1555 1555 1.32 LINK C LEU A 251 N MSE A 252 1555 1555 1.32 LINK C MSE A 252 N ILE A 253 1555 1555 1.32 LINK C ILE A 397 N MSE A 398 1555 1555 1.32 LINK C MSE A 398 N GLN A 399 1555 1555 1.32 LINK C GLN A 402 N MSE A 403 1555 1555 1.32 LINK C MSE A 403 N ALA A 404 1555 1555 1.32 CISPEP 1 GLU B 5 MSE B 6 0 9.63 CISPEP 2 MSE B 6 PHE B 7 0 -8.60 CISPEP 3 GLU B 212 GLY B 213 0 0.98 CISPEP 4 MSE A 6 PHE A 7 0 5.26 CISPEP 5 GLY F 28 ILE F 29 0 1.32 CISPEP 6 ILE F 29 THR F 30 0 -1.51 CRYST1 108.661 44.790 109.592 90.00 90.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009203 0.000000 0.000114 0.00000 SCALE2 0.000000 0.022326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009125 0.00000