HEADER LYASE 04-MAR-08 3CG0 TITLE CRYSTAL STRUCTURE OF SIGNAL RECEIVER DOMAIN OF MODULATED DIGUANYLATE TITLE 2 CYCLASE FROM DESULFOVIBRIO DESULFURICANS G20, AN EXAMPLE OF ALTERNATE TITLE 3 FOLDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR RECEIVER MODULATED DIGUANYLATE CYCLASE COMPND 3 WITH PAS/PAC SENSOR; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: SIGNAL RECEIVER DOMAIN: RESIDUES 2-130; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO DESULFURICANS SUBSP. SOURCE 3 DESULFURICANS STR.; SOURCE 4 ORGANISM_TAXID: 207559; SOURCE 5 STRAIN: G20; SOURCE 6 GENE: DDE_1631; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS SIGNAL RECEIVER DOMAIN, DIGUANYLATE CYCLASE, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, PSI-2, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, STRUCTURAL GENOMICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,J.B.BONANNO,R.ROMERO,M.GILMORE,S.CHANG,C.GROSHONG, AUTHOR 2 J.KOSS,S.R.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 9 21-FEB-24 3CG0 1 REMARK REVDAT 8 03-FEB-21 3CG0 1 AUTHOR JRNL SEQADV REVDAT 7 14-NOV-18 3CG0 1 AUTHOR REVDAT 6 25-OCT-17 3CG0 1 REMARK REVDAT 5 13-JUL-11 3CG0 1 VERSN REVDAT 4 09-JUN-09 3CG0 1 REVDAT REVDAT 3 24-FEB-09 3CG0 1 VERSN REVDAT 2 23-DEC-08 3CG0 1 AUTHOR KEYWDS REVDAT 1 18-MAR-08 3CG0 0 JRNL AUTH Y.PATSKOVSKY,J.B.BONANNO,R.ROMERO,M.GILMORE,S.CHANG, JRNL AUTH 2 C.GROSHONG,J.KOSS,S.R.WASSERMAN,J.M.SAUDER,S.K.BURLEY, JRNL AUTH 3 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF SIGNAL RECEIVER DOMAIN OF MODULATED JRNL TITL 2 DIGUANYLATE CYCLASE FROM DESULFOVIBRIO DESULFURICANS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 30631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2092 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : 1.92000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.263 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.812 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3969 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5406 ; 1.403 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 533 ; 5.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;38.648 ;24.080 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;19.903 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.794 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2989 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1683 ; 0.155 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2701 ; 0.295 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 242 ; 0.178 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.104 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.216 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2609 ; 3.961 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4110 ; 5.865 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1462 ; 6.704 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1279 ; 9.401 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 9 A 86 1 REMARK 3 1 B 9 B 86 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 544 ; 0.56 ; 0.25 REMARK 3 TIGHT THERMAL 1 A (A**2): 544 ; 4.41 ; 2.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 93 A 131 1 REMARK 3 1 B 93 B 131 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 B (A): 301 ; 0.74 ; 0.25 REMARK 3 TIGHT THERMAL 2 B (A**2): 301 ; 5.89 ; 2.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 9 C 86 1 REMARK 3 1 D 9 D 86 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 C (A): 557 ; 0.51 ; 0.25 REMARK 3 TIGHT THERMAL 3 C (A**2): 557 ; 5.41 ; 2.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 93 C 131 1 REMARK 3 1 D 93 D 131 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 D (A): 318 ; 0.51 ; 0.25 REMARK 3 TIGHT THERMAL 4 D (A**2): 318 ; 6.27 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 77.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31995 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.89000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM POTASSIUM TRI-CITRATE PH 7.5, REMARK 280 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 81.51050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.81550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.51050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.81550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE TETRAMERIC ASSEMBLY OF THE REMARK 300 BIOLOGICAL UNIT THAT IS SHOWN IN REMARK 350 IS PUTATIVE AT THE TIME REMARK 300 OF DEPOSITION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 -51.63100 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 67.68700 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 GLY A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 ASP B 6 REMARK 465 GLY B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 MET C -1 REMARK 465 SER C 0 REMARK 465 LEU C 1 REMARK 465 THR C 2 REMARK 465 ALA C 3 REMARK 465 SER C 4 REMARK 465 ASP C 5 REMARK 465 GLY C 132 REMARK 465 HIS C 133 REMARK 465 HIS C 134 REMARK 465 HIS C 135 REMARK 465 HIS C 136 REMARK 465 HIS C 137 REMARK 465 HIS C 138 REMARK 465 MET D -1 REMARK 465 SER D 0 REMARK 465 LEU D 1 REMARK 465 THR D 2 REMARK 465 ALA D 3 REMARK 465 SER D 4 REMARK 465 ASP D 5 REMARK 465 GLY D 132 REMARK 465 HIS D 133 REMARK 465 HIS D 134 REMARK 465 HIS D 135 REMARK 465 HIS D 136 REMARK 465 HIS D 137 REMARK 465 HIS D 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 102 72.18 47.03 REMARK 500 ASP B 50 35.35 -87.31 REMARK 500 LEU B 51 -29.96 -142.82 REMARK 500 SER B 89 46.77 -97.39 REMARK 500 ASN B 102 70.57 49.45 REMARK 500 SER C 88 -53.18 -138.66 REMARK 500 ASN C 102 75.60 43.96 REMARK 500 SER D 88 -25.57 -146.96 REMARK 500 GLN D 90 50.68 75.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER D 88 SER D 89 -120.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11022G RELATED DB: TARGETDB DBREF 3CG0 A 2 130 UNP Q311G8 Q311G8_DESDG 2 130 DBREF 3CG0 B 2 130 UNP Q311G8 Q311G8_DESDG 2 130 DBREF 3CG0 C 2 130 UNP Q311G8 Q311G8_DESDG 2 130 DBREF 3CG0 D 2 130 UNP Q311G8 Q311G8_DESDG 2 130 SEQADV 3CG0 MET A -1 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 SER A 0 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 LEU A 1 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 GLU A 131 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 GLY A 132 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS A 133 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS A 134 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS A 135 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS A 136 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS A 137 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS A 138 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 MET B -1 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 SER B 0 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 LEU B 1 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 GLU B 131 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 GLY B 132 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS B 133 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS B 134 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS B 135 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS B 136 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS B 137 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS B 138 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 MET C -1 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 SER C 0 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 LEU C 1 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 GLU C 131 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 GLY C 132 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS C 133 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS C 134 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS C 135 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS C 136 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS C 137 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS C 138 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 MET D -1 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 SER D 0 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 LEU D 1 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 GLU D 131 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 GLY D 132 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS D 133 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS D 134 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS D 135 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS D 136 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS D 137 UNP Q311G8 EXPRESSION TAG SEQADV 3CG0 HIS D 138 UNP Q311G8 EXPRESSION TAG SEQRES 1 A 140 MET SER LEU THR ALA SER ASP ASP LEU PRO GLY VAL LEU SEQRES 2 A 140 ILE VAL GLU ASP GLY ARG LEU ALA ALA ALA THR LEU ARG SEQRES 3 A 140 ILE GLN LEU GLU SER LEU GLY TYR ASP VAL LEU GLY VAL SEQRES 4 A 140 PHE ASP ASN GLY GLU GLU ALA VAL ARG CYS ALA PRO ASP SEQRES 5 A 140 LEU ARG PRO ASP ILE ALA LEU VAL ASP ILE MET LEU CYS SEQRES 6 A 140 GLY ALA LEU ASP GLY VAL GLU THR ALA ALA ARG LEU ALA SEQRES 7 A 140 ALA GLY CYS ASN LEU PRO ILE ILE PHE ILE THR SER SER SEQRES 8 A 140 GLN ASP VAL GLU THR PHE GLN ARG ALA LYS ARG VAL ASN SEQRES 9 A 140 PRO PHE GLY TYR LEU ALA LYS PRO VAL ALA ALA ASP THR SEQRES 10 A 140 LEU HIS ARG SER ILE GLU MET ALA ILE HIS LYS LYS LYS SEQRES 11 A 140 LEU GLU GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 140 MET SER LEU THR ALA SER ASP ASP LEU PRO GLY VAL LEU SEQRES 2 B 140 ILE VAL GLU ASP GLY ARG LEU ALA ALA ALA THR LEU ARG SEQRES 3 B 140 ILE GLN LEU GLU SER LEU GLY TYR ASP VAL LEU GLY VAL SEQRES 4 B 140 PHE ASP ASN GLY GLU GLU ALA VAL ARG CYS ALA PRO ASP SEQRES 5 B 140 LEU ARG PRO ASP ILE ALA LEU VAL ASP ILE MET LEU CYS SEQRES 6 B 140 GLY ALA LEU ASP GLY VAL GLU THR ALA ALA ARG LEU ALA SEQRES 7 B 140 ALA GLY CYS ASN LEU PRO ILE ILE PHE ILE THR SER SER SEQRES 8 B 140 GLN ASP VAL GLU THR PHE GLN ARG ALA LYS ARG VAL ASN SEQRES 9 B 140 PRO PHE GLY TYR LEU ALA LYS PRO VAL ALA ALA ASP THR SEQRES 10 B 140 LEU HIS ARG SER ILE GLU MET ALA ILE HIS LYS LYS LYS SEQRES 11 B 140 LEU GLU GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 140 MET SER LEU THR ALA SER ASP ASP LEU PRO GLY VAL LEU SEQRES 2 C 140 ILE VAL GLU ASP GLY ARG LEU ALA ALA ALA THR LEU ARG SEQRES 3 C 140 ILE GLN LEU GLU SER LEU GLY TYR ASP VAL LEU GLY VAL SEQRES 4 C 140 PHE ASP ASN GLY GLU GLU ALA VAL ARG CYS ALA PRO ASP SEQRES 5 C 140 LEU ARG PRO ASP ILE ALA LEU VAL ASP ILE MET LEU CYS SEQRES 6 C 140 GLY ALA LEU ASP GLY VAL GLU THR ALA ALA ARG LEU ALA SEQRES 7 C 140 ALA GLY CYS ASN LEU PRO ILE ILE PHE ILE THR SER SER SEQRES 8 C 140 GLN ASP VAL GLU THR PHE GLN ARG ALA LYS ARG VAL ASN SEQRES 9 C 140 PRO PHE GLY TYR LEU ALA LYS PRO VAL ALA ALA ASP THR SEQRES 10 C 140 LEU HIS ARG SER ILE GLU MET ALA ILE HIS LYS LYS LYS SEQRES 11 C 140 LEU GLU GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 D 140 MET SER LEU THR ALA SER ASP ASP LEU PRO GLY VAL LEU SEQRES 2 D 140 ILE VAL GLU ASP GLY ARG LEU ALA ALA ALA THR LEU ARG SEQRES 3 D 140 ILE GLN LEU GLU SER LEU GLY TYR ASP VAL LEU GLY VAL SEQRES 4 D 140 PHE ASP ASN GLY GLU GLU ALA VAL ARG CYS ALA PRO ASP SEQRES 5 D 140 LEU ARG PRO ASP ILE ALA LEU VAL ASP ILE MET LEU CYS SEQRES 6 D 140 GLY ALA LEU ASP GLY VAL GLU THR ALA ALA ARG LEU ALA SEQRES 7 D 140 ALA GLY CYS ASN LEU PRO ILE ILE PHE ILE THR SER SER SEQRES 8 D 140 GLN ASP VAL GLU THR PHE GLN ARG ALA LYS ARG VAL ASN SEQRES 9 D 140 PRO PHE GLY TYR LEU ALA LYS PRO VAL ALA ALA ASP THR SEQRES 10 D 140 LEU HIS ARG SER ILE GLU MET ALA ILE HIS LYS LYS LYS SEQRES 11 D 140 LEU GLU GLU GLY HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *91(H2 O) HELIX 1 1 GLY A 16 GLY A 31 1 16 HELIX 2 2 ASN A 40 ARG A 52 1 13 HELIX 3 3 ASP A 67 CYS A 79 1 13 HELIX 4 4 ASP A 91 ARG A 100 1 10 HELIX 5 5 ALA A 112 GLU A 130 1 19 HELIX 6 6 GLY B 16 LEU B 30 1 15 HELIX 7 7 ASN B 40 ALA B 48 1 9 HELIX 8 8 ASP B 67 CYS B 79 1 13 HELIX 9 9 ASP B 91 ARG B 100 1 10 HELIX 10 10 ALA B 112 GLU B 131 1 20 HELIX 11 11 GLY C 16 GLY C 31 1 16 HELIX 12 12 ASN C 40 ARG C 52 1 13 HELIX 13 13 ASP C 67 CYS C 79 1 13 HELIX 14 14 ASP C 91 ARG C 100 1 10 HELIX 15 15 ALA C 112 GLU C 131 1 20 HELIX 16 16 GLY D 16 SER D 29 1 14 HELIX 17 17 ASN D 40 ARG D 52 1 13 HELIX 18 18 ASP D 67 ASN D 80 1 14 HELIX 19 19 ASP D 91 LYS D 99 1 9 HELIX 20 20 ARG D 100 ASN D 102 5 3 HELIX 21 21 ALA D 112 GLU D 130 1 19 SHEET 1 A 5 ASP A 33 PHE A 38 0 SHEET 2 A 5 GLY A 9 VAL A 13 1 N VAL A 10 O ASP A 33 SHEET 3 A 5 ILE A 55 ASP A 59 1 O LEU A 57 N VAL A 13 SHEET 4 A 5 ILE A 83 THR A 87 1 O ILE A 84 N VAL A 58 SHEET 5 A 5 GLY B 105 ALA B 108 1 O LEU B 107 N PHE A 85 SHEET 1 B 5 GLY A 105 LYS A 109 0 SHEET 2 B 5 ILE B 83 SER B 88 1 O THR B 87 N LYS A 109 SHEET 3 B 5 ILE B 55 ASP B 59 1 N VAL B 58 O ILE B 86 SHEET 4 B 5 GLY B 9 VAL B 13 1 N LEU B 11 O LEU B 57 SHEET 5 B 5 ASP B 33 PHE B 38 1 O PHE B 38 N ILE B 12 SHEET 1 C 5 ASP C 33 PHE C 38 0 SHEET 2 C 5 GLY C 9 VAL C 13 1 N VAL C 10 O ASP C 33 SHEET 3 C 5 ILE C 55 ASP C 59 1 O LEU C 57 N LEU C 11 SHEET 4 C 5 ILE C 83 THR C 87 1 O ILE C 86 N VAL C 58 SHEET 5 C 5 GLY C 105 ALA C 108 1 O LEU C 107 N PHE C 85 SHEET 1 D 5 ASP D 33 PHE D 38 0 SHEET 2 D 5 GLY D 9 VAL D 13 1 N ILE D 12 O GLY D 36 SHEET 3 D 5 ILE D 55 ASP D 59 1 O LEU D 57 N VAL D 13 SHEET 4 D 5 ILE D 83 THR D 87 1 O ILE D 84 N ALA D 56 SHEET 5 D 5 GLY D 105 ALA D 108 1 O LEU D 107 N PHE D 85 CISPEP 1 LYS A 109 PRO A 110 0 -2.25 CISPEP 2 LYS B 109 PRO B 110 0 -10.03 CISPEP 3 LYS C 109 PRO C 110 0 -0.04 CISPEP 4 LYS D 109 PRO D 110 0 -6.48 CRYST1 163.021 51.631 67.687 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014774 0.00000