HEADER UNKNOWN FUNCTION 05-MAR-08 3CGI TITLE CRYSTAL STRUCTURE OF THE PDUU SHELL PROTEIN FROM THE PDU TITLE 2 MICROCOMPARTMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPANEDIOL UTILIZATION PROTEIN PDUU; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 90371; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: PDUU; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CIRCULAR PERMUTATION, BETA BARREL, BACTERIAL MICROCOMPARTMENT, KEYWDS 2 PROPANEDIOL, SIGNALING PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.S.CROWLEY,M.R.SAWAYA,T.O.YEATES REVDAT 6 30-AUG-23 3CGI 1 SEQADV REVDAT 5 25-OCT-17 3CGI 1 SOURCE REMARK REVDAT 4 13-JUL-11 3CGI 1 VERSN REVDAT 3 24-FEB-09 3CGI 1 VERSN REVDAT 2 23-SEP-08 3CGI 1 JRNL REVDAT 1 02-SEP-08 3CGI 0 JRNL AUTH C.S.CROWLEY,M.R.SAWAYA,T.A.BOBIK,T.O.YEATES JRNL TITL STRUCTURE OF THE PDUU SHELL PROTEIN FROM THE PDU JRNL TITL 2 MICROCOMPARTMENT OF SALMONELLA JRNL REF STRUCTURE V. 16 1324 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18786396 JRNL DOI 10.1016/J.STR.2008.05.013 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 40944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2063 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2638 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.55000 REMARK 3 B22 (A**2) : -2.55000 REMARK 3 B33 (A**2) : 3.82000 REMARK 3 B12 (A**2) : -1.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.761 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3583 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2343 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4873 ; 1.431 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5807 ; 0.905 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 5.413 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;39.270 ;24.815 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 646 ;11.858 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;10.075 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 610 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3950 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 659 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 668 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2296 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1753 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1897 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 89 ; 0.297 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3039 ; 2.657 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 951 ; 0.714 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3756 ; 3.012 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1409 ; 2.433 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1107 ; 3.334 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9459 1.2597 15.2468 REMARK 3 T TENSOR REMARK 3 T11: -0.0251 T22: -0.0019 REMARK 3 T33: -0.0212 T12: 0.0069 REMARK 3 T13: -0.0067 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.7358 L22: 0.2339 REMARK 3 L33: 0.7053 L12: -0.0594 REMARK 3 L13: -0.5675 L23: -0.1697 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0301 S13: 0.0138 REMARK 3 S21: 0.0279 S22: -0.0245 S23: -0.0508 REMARK 3 S31: -0.0146 S32: 0.0528 S33: 0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9130 17.9421 15.2975 REMARK 3 T TENSOR REMARK 3 T11: -0.0123 T22: -0.0213 REMARK 3 T33: -0.0250 T12: -0.0071 REMARK 3 T13: -0.0016 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.9275 L22: 0.5347 REMARK 3 L33: 0.5719 L12: 0.4180 REMARK 3 L13: -0.2017 L23: -0.4428 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: -0.0182 S13: 0.1623 REMARK 3 S21: 0.0227 S22: 0.0096 S23: 0.0206 REMARK 3 S31: -0.0117 S32: 0.0154 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 122 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8906 11.4877 -22.8582 REMARK 3 T TENSOR REMARK 3 T11: -0.0076 T22: -0.0109 REMARK 3 T33: -0.0467 T12: -0.0191 REMARK 3 T13: 0.0059 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.4157 L22: 0.9224 REMARK 3 L33: 0.6297 L12: 0.0660 REMARK 3 L13: 0.1925 L23: 0.2657 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0122 S13: 0.0257 REMARK 3 S21: -0.0640 S22: -0.0255 S23: -0.1989 REMARK 3 S31: -0.0578 S32: 0.0088 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 122 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3615 -8.4882 -22.3922 REMARK 3 T TENSOR REMARK 3 T11: -0.0124 T22: 0.0200 REMARK 3 T33: -0.0769 T12: 0.0032 REMARK 3 T13: 0.0142 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.1130 L22: 0.3145 REMARK 3 L33: 0.6731 L12: 0.0326 REMARK 3 L13: 0.4010 L23: -0.0541 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0284 S13: -0.1100 REMARK 3 S21: -0.0356 S22: -0.0159 S23: -0.1021 REMARK 3 S31: 0.0450 S32: 0.0624 S33: -0.0077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUE ASP41 FROM CHAINS A, B, C, AND D HAVE AN REMARK 3 UNUSUAL TORSION ANGLES DUE TO CRYSTALLOGRAPHIC PACKING. REMARK 4 REMARK 4 3CGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40948 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2EWH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES, 300 MM LISO4, 20% PEG REMARK 280 -3350, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.07000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.40237 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.67367 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 37.07000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 21.40237 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.67367 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 37.07000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 21.40237 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.67367 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.80475 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 145.34733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.80475 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 145.34733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.80475 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 145.34733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -227.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 153 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 3 REMARK 465 GLN B 4 REMARK 465 PRO B 5 REMARK 465 THR B 6 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 ARG C 3 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 ARG D 3 REMARK 465 GLN D 4 REMARK 465 PRO D 5 REMARK 465 HIS D 123 REMARK 465 HIS D 124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP D 62 O HOH C 160 3555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 174.44 75.64 REMARK 500 ASP B 41 175.01 73.66 REMARK 500 ASP B 41 176.83 70.88 REMARK 500 ASP C 41 175.55 68.82 REMARK 500 ASP D 41 177.99 69.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EWH RELATED DB: PDB REMARK 900 SHELL PROTEIN STRUCTURAL HOMOLOGUE FROM HALOTHIOBACILLUS REMARK 900 NEOPOLITANUS CARBOXYSOME REMARK 900 RELATED ID: 2A10 RELATED DB: PDB REMARK 900 SHELL PROTEIN STRUCTURAL HOMOLOGUE FROM SYNECHOCYSTIS PCC6803 REMARK 900 CARBOXYSOME REMARK 900 RELATED ID: 2A1B RELATED DB: PDB REMARK 900 SHELL PROTEIN STRUCTURAL HOMOLOGUE FROM SYNECHOCYSTIS PCC6803 REMARK 900 CARBOXYSOME DBREF 3CGI A 1 116 UNP P0A1D1 PDUU_SALTY 1 116 DBREF 3CGI B 1 116 UNP P0A1D1 PDUU_SALTY 1 116 DBREF 3CGI C 1 116 UNP P0A1D1 PDUU_SALTY 1 116 DBREF 3CGI D 1 116 UNP P0A1D1 PDUU_SALTY 1 116 SEQADV 3CGI LEU A 117 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI GLU A 118 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS A 119 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS A 120 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS A 121 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS A 122 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS A 123 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS A 124 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI LEU B 117 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI GLU B 118 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS B 119 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS B 120 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS B 121 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS B 122 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS B 123 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS B 124 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI LEU C 117 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI GLU C 118 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS C 119 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS C 120 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS C 121 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS C 122 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS C 123 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS C 124 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI LEU D 117 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI GLU D 118 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS D 119 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS D 120 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS D 121 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS D 122 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS D 123 UNP P0A1D1 EXPRESSION TAG SEQADV 3CGI HIS D 124 UNP P0A1D1 EXPRESSION TAG SEQRES 1 A 124 MET GLU ARG GLN PRO THR THR ASP ARG MET ILE GLN GLU SEQRES 2 A 124 TYR VAL PRO GLY LYS GLN VAL THR LEU ALA HIS LEU ILE SEQRES 3 A 124 ALA ASN PRO GLY LYS ASP LEU PHE LYS LYS LEU GLY LEU SEQRES 4 A 124 GLN ASP ALA VAL SER ALA ILE GLY ILE LEU THR ILE THR SEQRES 5 A 124 PRO SER GLU ALA SER ILE ILE ALA CYS ASP ILE ALA THR SEQRES 6 A 124 LYS SER GLY ALA VAL GLU ILE GLY PHE LEU ASP ARG PHE SEQRES 7 A 124 THR GLY ALA VAL VAL LEU THR GLY ASP VAL SER ALA VAL SEQRES 8 A 124 GLU TYR ALA LEU LYS GLN VAL THR ARG THR LEU GLY GLU SEQRES 9 A 124 MET MET GLN PHE THR THR CYS SER ILE THR ARG THR LEU SEQRES 10 A 124 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 124 MET GLU ARG GLN PRO THR THR ASP ARG MET ILE GLN GLU SEQRES 2 B 124 TYR VAL PRO GLY LYS GLN VAL THR LEU ALA HIS LEU ILE SEQRES 3 B 124 ALA ASN PRO GLY LYS ASP LEU PHE LYS LYS LEU GLY LEU SEQRES 4 B 124 GLN ASP ALA VAL SER ALA ILE GLY ILE LEU THR ILE THR SEQRES 5 B 124 PRO SER GLU ALA SER ILE ILE ALA CYS ASP ILE ALA THR SEQRES 6 B 124 LYS SER GLY ALA VAL GLU ILE GLY PHE LEU ASP ARG PHE SEQRES 7 B 124 THR GLY ALA VAL VAL LEU THR GLY ASP VAL SER ALA VAL SEQRES 8 B 124 GLU TYR ALA LEU LYS GLN VAL THR ARG THR LEU GLY GLU SEQRES 9 B 124 MET MET GLN PHE THR THR CYS SER ILE THR ARG THR LEU SEQRES 10 B 124 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 124 MET GLU ARG GLN PRO THR THR ASP ARG MET ILE GLN GLU SEQRES 2 C 124 TYR VAL PRO GLY LYS GLN VAL THR LEU ALA HIS LEU ILE SEQRES 3 C 124 ALA ASN PRO GLY LYS ASP LEU PHE LYS LYS LEU GLY LEU SEQRES 4 C 124 GLN ASP ALA VAL SER ALA ILE GLY ILE LEU THR ILE THR SEQRES 5 C 124 PRO SER GLU ALA SER ILE ILE ALA CYS ASP ILE ALA THR SEQRES 6 C 124 LYS SER GLY ALA VAL GLU ILE GLY PHE LEU ASP ARG PHE SEQRES 7 C 124 THR GLY ALA VAL VAL LEU THR GLY ASP VAL SER ALA VAL SEQRES 8 C 124 GLU TYR ALA LEU LYS GLN VAL THR ARG THR LEU GLY GLU SEQRES 9 C 124 MET MET GLN PHE THR THR CYS SER ILE THR ARG THR LEU SEQRES 10 C 124 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 124 MET GLU ARG GLN PRO THR THR ASP ARG MET ILE GLN GLU SEQRES 2 D 124 TYR VAL PRO GLY LYS GLN VAL THR LEU ALA HIS LEU ILE SEQRES 3 D 124 ALA ASN PRO GLY LYS ASP LEU PHE LYS LYS LEU GLY LEU SEQRES 4 D 124 GLN ASP ALA VAL SER ALA ILE GLY ILE LEU THR ILE THR SEQRES 5 D 124 PRO SER GLU ALA SER ILE ILE ALA CYS ASP ILE ALA THR SEQRES 6 D 124 LYS SER GLY ALA VAL GLU ILE GLY PHE LEU ASP ARG PHE SEQRES 7 D 124 THR GLY ALA VAL VAL LEU THR GLY ASP VAL SER ALA VAL SEQRES 8 D 124 GLU TYR ALA LEU LYS GLN VAL THR ARG THR LEU GLY GLU SEQRES 9 D 124 MET MET GLN PHE THR THR CYS SER ILE THR ARG THR LEU SEQRES 10 D 124 GLU HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *165(H2 O) HELIX 1 1 GLY A 30 LEU A 37 1 8 HELIX 2 2 GLU A 55 SER A 67 1 13 HELIX 3 3 ASP A 87 GLN A 107 1 21 HELIX 4 4 GLY B 30 LEU B 37 1 8 HELIX 5 5 PRO B 53 GLU B 55 5 3 HELIX 6 6 ALA B 56 SER B 67 1 12 HELIX 7 7 ASP B 87 GLN B 107 1 21 HELIX 8 8 GLY C 30 LEU C 37 1 8 HELIX 9 9 GLU C 55 GLY C 68 1 14 HELIX 10 10 ASP C 87 GLN C 107 1 21 HELIX 11 11 GLY D 30 LEU D 37 1 8 HELIX 12 12 GLU D 55 SER D 67 1 13 HELIX 13 13 ASP D 87 GLN D 107 1 21 SHEET 1 A 2 ARG A 9 TYR A 14 0 SHEET 2 A 2 ILE B 11 PRO B 16 1 O GLU B 13 N MET A 10 SHEET 1 B 5 VAL A 70 ASP A 76 0 SHEET 2 B 5 ALA A 81 GLY A 86 -1 O VAL A 83 N GLY A 73 SHEET 3 B 5 ALA A 45 THR A 52 -1 N GLY A 47 O LEU A 84 SHEET 4 B 5 GLN A 19 ILE A 26 -1 N GLN A 19 O THR A 52 SHEET 5 B 5 THR A 109 THR A 110 1 O THR A 109 N VAL A 20 SHEET 1 C 5 VAL A 70 ASP A 76 0 SHEET 2 C 5 ALA A 81 GLY A 86 -1 O VAL A 83 N GLY A 73 SHEET 3 C 5 ALA A 45 THR A 52 -1 N GLY A 47 O LEU A 84 SHEET 4 C 5 GLN A 19 ILE A 26 -1 N GLN A 19 O THR A 52 SHEET 5 C 5 THR A 114 THR A 116 1 O THR A 116 N LEU A 25 SHEET 1 D 5 VAL B 70 ASP B 76 0 SHEET 2 D 5 ALA B 81 GLY B 86 -1 O THR B 85 N GLU B 71 SHEET 3 D 5 ALA B 45 THR B 52 -1 N GLY B 47 O LEU B 84 SHEET 4 D 5 GLN B 19 ILE B 26 -1 N GLN B 19 O THR B 52 SHEET 5 D 5 THR B 109 THR B 110 1 O THR B 109 N VAL B 20 SHEET 1 E 5 VAL B 70 ASP B 76 0 SHEET 2 E 5 ALA B 81 GLY B 86 -1 O THR B 85 N GLU B 71 SHEET 3 E 5 ALA B 45 THR B 52 -1 N GLY B 47 O LEU B 84 SHEET 4 E 5 GLN B 19 ILE B 26 -1 N GLN B 19 O THR B 52 SHEET 5 E 5 THR B 114 THR B 116 1 O THR B 114 N LEU B 25 SHEET 1 F 2 ARG C 9 TYR C 14 0 SHEET 2 F 2 ILE D 11 PRO D 16 1 O GLU D 13 N GLN C 12 SHEET 1 G 5 VAL C 70 ASP C 76 0 SHEET 2 G 5 ALA C 81 GLY C 86 -1 O THR C 85 N GLU C 71 SHEET 3 G 5 ALA C 45 THR C 52 -1 N LEU C 49 O VAL C 82 SHEET 4 G 5 GLN C 19 ILE C 26 -1 N GLN C 19 O THR C 52 SHEET 5 G 5 THR C 109 THR C 110 1 O THR C 109 N VAL C 20 SHEET 1 H 5 VAL C 70 ASP C 76 0 SHEET 2 H 5 ALA C 81 GLY C 86 -1 O THR C 85 N GLU C 71 SHEET 3 H 5 ALA C 45 THR C 52 -1 N LEU C 49 O VAL C 82 SHEET 4 H 5 GLN C 19 ILE C 26 -1 N GLN C 19 O THR C 52 SHEET 5 H 5 THR C 114 THR C 116 1 O THR C 114 N LEU C 25 SHEET 1 I 5 VAL D 70 LEU D 75 0 SHEET 2 I 5 VAL D 82 GLY D 86 -1 O THR D 85 N GLU D 71 SHEET 3 I 5 ALA D 45 THR D 52 -1 N LEU D 49 O VAL D 82 SHEET 4 I 5 GLN D 19 ILE D 26 -1 N GLN D 19 O THR D 52 SHEET 5 I 5 THR D 109 THR D 110 1 O THR D 109 N VAL D 20 SHEET 1 J 5 VAL D 70 LEU D 75 0 SHEET 2 J 5 VAL D 82 GLY D 86 -1 O THR D 85 N GLU D 71 SHEET 3 J 5 ALA D 45 THR D 52 -1 N LEU D 49 O VAL D 82 SHEET 4 J 5 GLN D 19 ILE D 26 -1 N GLN D 19 O THR D 52 SHEET 5 J 5 THR D 114 THR D 116 1 O THR D 114 N LEU D 25 CISPEP 1 THR A 52 PRO A 53 0 -2.18 CISPEP 2 THR B 52 PRO B 53 0 -1.34 CISPEP 3 THR C 52 PRO C 53 0 -0.94 CISPEP 4 THR D 52 PRO D 53 0 -0.66 CRYST1 74.140 74.140 218.021 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013488 0.007787 0.000000 0.00000 SCALE2 0.000000 0.015575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004587 0.00000