HEADER TRANSPORT PROTEIN 07-MAR-08 3CH5 TITLE THE CRYSTAL STRUCTURE OF THE RANGDP-NUP153ZNF2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GTPASE RAN; RAS-LIKE PROTEIN TC4; ANDROGEN RECEPTOR- COMPND 5 ASSOCIATED PROTEIN 24; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FRAGMENT OF NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 703-754; COMPND 11 SYNONYM: NUP153ZNF2; NUCLEOPORIN NUP153; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAN, ARA24; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: NUP153; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODONPLUS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS RANBP2 TYPE C2-C2 ZINC FINGER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.R.VETTER,N.SCHRADER REVDAT 6 03-APR-24 3CH5 1 REMARK REVDAT 5 21-FEB-24 3CH5 1 REMARK SHEET LINK REVDAT 4 13-JUL-11 3CH5 1 VERSN REVDAT 3 24-FEB-09 3CH5 1 VERSN REVDAT 2 22-JUL-08 3CH5 1 JRNL REVDAT 1 01-JUL-08 3CH5 0 JRNL AUTH N.SCHRADER,C.KOERNER,K.KOESSMEIER,J.A.BANGERT, JRNL AUTH 2 A.WITTINGHOFER,R.STOLL,I.R.VETTER JRNL TITL THE CRYSTAL STRUCTURE OF THE RAN-NUP153ZNF2 COMPLEX: A JRNL TITL 2 GENERAL RAN DOCKING SITE AT THE NUCLEAR PORE COMPLEX JRNL REF STRUCTURE V. 16 1116 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18611384 JRNL DOI 10.1016/J.STR.2008.03.014 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 949 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1820 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 13.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32000 REMARK 3 B22 (A**2) : 2.92000 REMARK 3 B33 (A**2) : -1.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.866 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1969 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2686 ; 1.674 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 6.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;38.235 ;24.719 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;18.353 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1503 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 850 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1339 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.010 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.302 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 0.751 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1935 ; 1.234 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 867 ; 1.841 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 751 ; 2.800 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2428 -14.2837 -46.4228 REMARK 3 T TENSOR REMARK 3 T11: -0.0644 T22: -0.0997 REMARK 3 T33: -0.0474 T12: 0.0295 REMARK 3 T13: -0.0522 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 3.8087 L22: 2.1541 REMARK 3 L33: 3.5811 L12: -0.5553 REMARK 3 L13: -0.2415 L23: 0.0844 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: -0.0814 S13: -0.5499 REMARK 3 S21: -0.0217 S22: -0.2189 S23: 0.0972 REMARK 3 S31: 0.5185 S32: 0.2902 S33: 0.0621 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 713 B 749 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5564 -12.9017 -25.7564 REMARK 3 T TENSOR REMARK 3 T11: 0.0480 T22: 0.2076 REMARK 3 T33: 0.0125 T12: -0.0574 REMARK 3 T13: 0.0925 T23: 0.1540 REMARK 3 L TENSOR REMARK 3 L11: 12.6597 L22: 8.1697 REMARK 3 L33: 4.5533 L12: 2.9284 REMARK 3 L13: -4.6143 L23: -1.0098 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: -0.8811 S13: -0.4114 REMARK 3 S21: 0.3609 S22: -0.2078 S23: 0.5918 REMARK 3 S31: 0.0175 S32: -0.3419 S33: 0.2429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18026 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : 0.35400 REMARK 200 FOR SHELL : 6.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: RANGDP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M BIS TRIS, REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.85000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.52500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.85000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.67500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.52500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.85000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.67500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.52500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.85000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.67500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -240.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -123.05000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -123.05000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 VAL A 137 REMARK 465 PHE A 138 REMARK 465 HIS A 139 REMARK 465 ARG A 140 REMARK 465 LYS A 141 REMARK 465 LYS A 142 REMARK 465 THR A 206 REMARK 465 THR A 207 REMARK 465 ALA A 208 REMARK 465 LEU A 209 REMARK 465 PRO A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 214 REMARK 465 ASP A 215 REMARK 465 LEU A 216 REMARK 465 SER B 703 REMARK 465 ASP B 704 REMARK 465 LYS B 705 REMARK 465 PRO B 706 REMARK 465 ALA B 707 REMARK 465 SER B 708 REMARK 465 THR B 709 REMARK 465 SER B 710 REMARK 465 GLY B 711 REMARK 465 THR B 712 REMARK 465 GLY B 750 REMARK 465 THR B 751 REMARK 465 GLY B 752 REMARK 465 VAL B 753 REMARK 465 LYS B 754 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 737 CG GLU B 737 CD 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 730 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 8 -153.29 -129.64 REMARK 500 CYS A 112 -64.20 -95.55 REMARK 500 LYS A 123 31.96 74.66 REMARK 500 ALA A 204 -67.84 -90.01 REMARK 500 LYS B 717 31.26 79.24 REMARK 500 PHE B 718 -0.49 -150.95 REMARK 500 LEU B 731 69.62 -112.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 221 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 GDP A 220 O1B 95.4 REMARK 620 3 HOH A 236 O 90.1 91.2 REMARK 620 4 HOH A 265 O 87.9 95.4 173.2 REMARK 620 5 HOH A 269 O 172.0 89.6 96.0 85.4 REMARK 620 6 HOH A 270 O 79.5 174.5 86.7 86.5 95.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 800 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 727 SG REMARK 620 2 CYS B 730 SG 118.1 REMARK 620 3 CYS B 741 SG 108.9 104.9 REMARK 620 4 CYS B 744 SG 97.7 118.4 108.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 220 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KOC RELATED DB: PDB REMARK 900 RELATED ID: 2EBV RELATED DB: PDB REMARK 900 RELATED ID: 2GQE RELATED DB: PDB REMARK 900 RELATED ID: 2EBQ RELATED DB: PDB REMARK 900 RELATED ID: 2EBR RELATED DB: PDB REMARK 900 RELATED ID: 1IBR RELATED DB: PDB DBREF 3CH5 A 1 216 UNP P62826 RAN_HUMAN 1 216 DBREF 3CH5 B 703 754 UNP P49791 NU153_RAT 703 754 SEQRES 1 A 216 MET ALA ALA GLN GLY GLU PRO GLN VAL GLN PHE LYS LEU SEQRES 2 A 216 VAL LEU VAL GLY ASP GLY GLY THR GLY LYS THR THR PHE SEQRES 3 A 216 VAL LYS ARG HIS LEU THR GLY GLU PHE GLU LYS LYS TYR SEQRES 4 A 216 VAL ALA THR LEU GLY VAL GLU VAL HIS PRO LEU VAL PHE SEQRES 5 A 216 HIS THR ASN ARG GLY PRO ILE LYS PHE ASN VAL TRP ASP SEQRES 6 A 216 THR ALA GLY GLN GLU LYS PHE GLY GLY LEU ARG ASP GLY SEQRES 7 A 216 TYR TYR ILE GLN ALA GLN CYS ALA ILE ILE MET PHE ASP SEQRES 8 A 216 VAL THR SER ARG VAL THR TYR LYS ASN VAL PRO ASN TRP SEQRES 9 A 216 HIS ARG ASP LEU VAL ARG VAL CYS GLU ASN ILE PRO ILE SEQRES 10 A 216 VAL LEU CYS GLY ASN LYS VAL ASP ILE LYS ASP ARG LYS SEQRES 11 A 216 VAL LYS ALA LYS SER ILE VAL PHE HIS ARG LYS LYS ASN SEQRES 12 A 216 LEU GLN TYR TYR ASP ILE SER ALA LYS SER ASN TYR ASN SEQRES 13 A 216 PHE GLU LYS PRO PHE LEU TRP LEU ALA ARG LYS LEU ILE SEQRES 14 A 216 GLY ASP PRO ASN LEU GLU PHE VAL ALA MET PRO ALA LEU SEQRES 15 A 216 ALA PRO PRO GLU VAL VAL MET ASP PRO ALA LEU ALA ALA SEQRES 16 A 216 GLN TYR GLU HIS ASP LEU GLU VAL ALA GLN THR THR ALA SEQRES 17 A 216 LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 B 52 SER ASP LYS PRO ALA SER THR SER GLY THR GLY PHE GLY SEQRES 2 B 52 ASP LYS PHE LYS PRO ALA ILE GLY THR TRP ASP CYS ASP SEQRES 3 B 52 THR CYS LEU VAL GLN ASN LYS PRO GLU ALA VAL LYS CYS SEQRES 4 B 52 VAL ALA CYS GLU THR PRO LYS PRO GLY THR GLY VAL LYS HET MG A 221 1 HET SO4 A 222 5 HET GDP A 220 28 HET ZN B 800 1 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 MG MG 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 ZN ZN 2+ FORMUL 7 HOH *71(H2 O) HELIX 1 1 GLY A 22 HIS A 30 1 9 HELIX 2 1 THR A 32 LYS A 37 1 6 HELIX 3 2 GLN A 69 GLY A 73 5 5 HELIX 4 3 ARG A 76 ILE A 81 1 6 HELIX 5 4 SER A 94 ASN A 100 1 7 HELIX 6 5 ASN A 100 GLU A 113 1 14 HELIX 7 7 GLU A 158 GLY A 170 1 13 HELIX 8 8 ALA A 192 GLN A 205 1 14 SHEET 1 A 7 LYS A 38 VAL A 40 0 SHEET 2 A 7 VAL A 45 THR A 54 0 SHEET 3 A 7 GLY A 57 THR A 66 -1 O PHE A 61 N LEU A 50 SHEET 4 A 7 VAL A 9 GLY A 17 1 N LEU A 13 O TRP A 64 SHEET 5 A 7 CYS A 85 ASP A 91 1 O MET A 89 N VAL A 16 SHEET 6 A 7 ILE A 117 ASN A 122 1 O ASN A 122 N PHE A 90 SHEET 7 A 7 GLN A 145 ASP A 148 1 O GLN A 145 N LEU A 119 SHEET 1 B 3 LYS A 38 TYR A 39 0 SHEET 2 B 3 VAL A 45 THR A 54 -1 O VAL A 47 N LYS A 38 SHEET 3 B 3 PHE A 176 ALA A 178 -1 O VAL A 177 N HIS A 53 SHEET 1 C 2 TRP B 725 ASP B 726 0 SHEET 2 C 2 GLN B 733 ASN B 734 -1 O ASN B 734 N TRP B 725 LINK OG1 THR A 24 MG MG A 221 1555 1555 2.17 LINK O1B GDP A 220 MG MG A 221 1555 1555 2.00 LINK MG MG A 221 O HOH A 236 1555 1555 2.14 LINK MG MG A 221 O HOH A 265 1555 1555 2.13 LINK MG MG A 221 O HOH A 269 1555 1555 2.21 LINK MG MG A 221 O HOH A 270 1555 1555 1.98 LINK SG CYS B 727 ZN ZN B 800 1555 1555 2.24 LINK SG CYS B 730 ZN ZN B 800 1555 1555 2.36 LINK SG CYS B 741 ZN ZN B 800 1555 1555 2.40 LINK SG CYS B 744 ZN ZN B 800 1555 1555 2.41 CISPEP 1 PRO A 7 GLN A 8 0 5.09 CISPEP 2 CYS A 112 GLU A 113 0 -23.54 CISPEP 3 PHE B 714 GLY B 715 0 -4.32 CISPEP 4 ASP B 716 LYS B 717 0 -8.87 CISPEP 5 CYS B 730 LEU B 731 0 -24.61 SITE 1 AC1 1 THR A 24 SITE 1 AC2 4 CYS B 727 CYS B 730 CYS B 741 CYS B 744 SITE 1 AC3 4 THR A 32 HIS A 53 PRO A 180 ALA A 181 SITE 1 AC4 15 ASP A 18 GLY A 19 GLY A 20 THR A 21 SITE 2 AC4 15 GLY A 22 LYS A 23 THR A 24 THR A 25 SITE 3 AC4 15 ASN A 122 LYS A 123 ASP A 125 ILE A 126 SITE 4 AC4 15 SER A 150 ALA A 151 LYS A 152 CRYST1 69.700 75.350 123.050 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014347 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008127 0.00000