HEADER PLANT PROTEIN 10-MAR-08 3CHM TITLE CRYSTAL STRUCTURE OF PCI DOMAIN FROM A. THALIANA COP9 SIGNALOSOME TITLE 2 SUBUNIT 7 (CSN7) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COP9 SIGNALOSOME COMPLEX SUBUNIT 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PCI DOMAIN; COMPND 5 SYNONYM: CSN COMPLEX SUBUNIT 7, PROTEIN FUSCA 5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: FUS5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TUNER DE3 CODON(+); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS HEAT/ARM REPEATS, WINGED HELIX MOTIF, DEVELOPMENTAL PROTEIN, NUCLEUS, KEYWDS 2 PHOSPHOPROTEIN, PHYTOCHROME SIGNALING PATHWAY, SIGNALOSOME, PLANT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.DESSAU,J.A.HIRSCH REVDAT 4 13-MAR-24 3CHM 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3CHM 1 VERSN REVDAT 2 03-FEB-09 3CHM 1 JRNL VERSN REVDAT 1 28-OCT-08 3CHM 0 JRNL AUTH M.DESSAU,Y.HALIMI,T.EREZ,O.CHOMSKY-HECHT,D.A.CHAMOVITZ, JRNL AUTH 2 J.A.HIRSCH JRNL TITL THE ARABIDOPSIS COP9 SIGNALOSOME SUBUNIT 7 IS A MODEL PCI JRNL TITL 2 DOMAIN PROTEIN WITH SUBDOMAINS INVOLVED IN COP9 SIGNALOSOME JRNL TITL 3 ASSEMBLY JRNL REF PLANT CELL V. 20 2815 2008 JRNL REFN ISSN 1040-4651 JRNL PMID 18854373 JRNL DOI 10.1105/TPC.107.053801 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.DESSAU,D.A.CHAMOVITZ,J.A.HIRSCH REMARK 1 TITL EXPRESSION, PURIFICATION AND CRYSTALLIZATION OF A PCI DOMAIN REMARK 1 TITL 2 FROM THE COP9 SIGNALOSOME SUBUNIT 7 (CSN7) REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 62 1138 2006 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17077498 REMARK 1 DOI 10.1107/S1744309106041959 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1186 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1932 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.1740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1266 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1476 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 999 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2023 ; 1.540 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2475 ; 0.999 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 199 ; 7.288 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;39.262 ;25.152 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;11.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.597 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 229 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1718 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 282 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 342 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1090 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 739 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 731 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 205 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.099 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.331 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.203 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1222 ; 2.055 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 360 ; 0.334 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1517 ; 2.231 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 610 ; 3.439 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 504 ; 4.518 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2246 -1.2859 13.8651 REMARK 3 T TENSOR REMARK 3 T11: -0.0161 T22: -0.0141 REMARK 3 T33: -0.0266 T12: 0.0000 REMARK 3 T13: -0.0044 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.6955 L22: 0.4333 REMARK 3 L33: 0.5314 L12: -0.2296 REMARK 3 L13: -0.3397 L23: 0.1784 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0307 S13: -0.0227 REMARK 3 S21: 0.0074 S22: -0.0099 S23: 0.0377 REMARK 3 S31: 0.0436 S32: 0.0184 S33: 0.0080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-06; 20-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 110; NULL REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID14-1; BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934; 0.97944, 0.97967 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28844 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 47.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% W/V PEG 8000, 0.1M SODIUM REMARK 280 CACODYLATE (PH 7.2), 0.06-0.08M MG-ACETATE TETRAHYDRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.17150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.17150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.54700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.89800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.54700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.89800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.17150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.54700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.89800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.17150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.54700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.89800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 398 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASP A 2 REMARK 465 ILE A 3 REMARK 465 GLY A 165 REMARK 465 GLN A 166 REMARK 465 LEU A 167 REMARK 465 GLY A 168 REMARK 465 ASN A 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 401 O HOH A 401 4555 2.00 REMARK 500 O HOH A 374 O HOH A 377 3555 2.11 REMARK 500 SG CYS A 79 O HOH A 388 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 5 CA - C - N ANGL. DEV. = -15.4 DEGREES REMARK 500 GLN A 5 CA - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 LYS A 6 N - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 LYS A 6 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 6 -46.42 162.42 REMARK 500 LYS A 6 -49.62 161.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 5 LYS A 6 -129.13 REMARK 500 GLN A 5 LYS A 6 -127.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 5 -15.98 REMARK 500 GLN A 5 -16.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 170 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD1 REMARK 620 2 HOH A 375 O 174.7 REMARK 620 3 HOH A 376 O 90.9 83.9 REMARK 620 4 HOH A 377 O 111.9 73.4 155.6 REMARK 620 5 HOH A 378 O 93.4 88.2 95.3 75.7 REMARK 620 6 HOH A 379 O 95.6 82.2 77.8 106.9 168.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 174 DBREF 3CHM A 2 169 UNP Q94JU3 CSN7_ARATH 2 169 SEQADV 3CHM GLY A 1 UNP Q94JU3 EXPRESSION TAG SEQRES 1 A 169 GLY ASP ILE GLU GLN LYS GLN ALA GLU ILE ILE ASP GLN SEQRES 2 A 169 LEU VAL LYS ARG ALA SER THR CYS LYS SER GLU ALA LEU SEQRES 3 A 169 GLY PRO LEU ILE ILE GLU ALA THR SER HIS PRO SER LEU SEQRES 4 A 169 PHE ALA PHE SER GLU ILE LEU ALA LEU PRO ASN VAL ALA SEQRES 5 A 169 GLN LEU GLU GLY THR THR ASP SER VAL TYR LEU ASP LEU SEQRES 6 A 169 LEU ARG LEU PHE ALA HIS GLY THR TRP GLY ASP TYR LYS SEQRES 7 A 169 CYS ASN ALA THR ARG LEU PRO HIS LEU SER PRO ASP GLN SEQRES 8 A 169 ILE LEU LYS LEU LYS GLN LEU THR VAL LEU THR LEU ALA SEQRES 9 A 169 GLU SER ASN LYS VAL LEU PRO TYR ASP THR LEU MET VAL SEQRES 10 A 169 GLU LEU ASP VAL SER ASN VAL ARG GLU LEU GLU ASP PHE SEQRES 11 A 169 LEU ILE ASN GLU CYS MET TYR ALA GLY ILE VAL ARG GLY SEQRES 12 A 169 LYS LEU ASP GLN LEU LYS ARG CYS PHE GLU VAL PRO PHE SEQRES 13 A 169 ALA ALA GLY ARG ASP LEU ARG PRO GLY GLN LEU GLY ASN HET MG A 170 1 HET MG A 171 1 HET ACT A 172 4 HET ACT A 173 4 HET ACT A 174 4 HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION FORMUL 2 MG 2(MG 2+) FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 7 HOH *244(H2 O) HELIX 1 1 LYS A 6 SER A 19 1 14 HELIX 2 2 LYS A 22 GLU A 24 5 3 HELIX 3 3 ALA A 25 HIS A 36 1 12 HELIX 4 4 PHE A 42 ALA A 47 1 6 HELIX 5 5 LEU A 48 GLN A 53 1 6 HELIX 6 6 ASP A 59 GLY A 72 1 14 HELIX 7 7 THR A 73 ALA A 81 1 9 HELIX 8 8 THR A 82 LEU A 84 5 3 HELIX 9 9 SER A 88 ASN A 107 1 20 HELIX 10 10 TYR A 112 ASP A 120 1 9 HELIX 11 11 ASN A 123 GLU A 134 1 12 SHEET 1 A 3 VAL A 109 PRO A 111 0 SHEET 2 A 3 CYS A 151 ALA A 157 -1 O PHE A 152 N LEU A 110 SHEET 3 A 3 VAL A 141 ASP A 146 -1 N ASP A 146 O CYS A 151 LINK CH3 ACT A 172 O ACT A 173 1555 1555 1.43 LINK OD1AASP A 161 MG MG A 170 1555 1555 1.94 LINK MG MG A 170 O HOH A 375 1555 1555 2.07 LINK MG MG A 170 O HOH A 376 1555 1555 1.89 LINK MG MG A 170 O HOH A 377 1555 1555 2.03 LINK MG MG A 170 O HOH A 378 1555 1555 2.00 LINK MG MG A 170 O HOH A 379 1555 1555 2.02 LINK MG MG A 171 O HOH A 415 1555 1555 2.43 CISPEP 1 GLU A 4 GLN A 5 0 10.26 SITE 1 AC1 7 GLU A 55 ASP A 161 HOH A 375 HOH A 376 SITE 2 AC1 7 HOH A 377 HOH A 378 HOH A 379 SITE 1 AC2 6 PHE A 42 SER A 43 ALA A 70 ARG A 160 SITE 2 AC2 6 HOH A 184 HOH A 415 SITE 1 AC3 4 GLY A 139 PHE A 156 ALA A 158 HOH A 246 SITE 1 AC4 4 GLY A 139 ARG A 142 HOH A 292 HOH A 418 SITE 1 AC5 5 SER A 23 GLU A 24 THR A 57 THR A 58 SITE 2 AC5 5 ASP A 59 CRYST1 57.094 85.796 72.343 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017515 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013823 0.00000